Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g28981 Fragaria vesca HOM05D003730 ORTHO05D004458 4.5e-35 150.6 71 100.0
Sp6g40210 Schrenkiella parvula HOM05D003730 ORTHO05D004458 4.1e-12 74.3 50 74.0
MD04G1130500 Malus domestica HOM05D003730 ORTHO05D004458 7.1e-12 73.6 50 72.0
MD12G1143700 Malus domestica HOM05D003730 ORTHO05D004458 9.2e-12 73.2 50 70.0
Prupe.6G257200 Prunus persica HOM05D003730 ORTHO05D004458 9.2e-12 73.2 50 72.0
C09p74290 Brassica napus HOM05D003730 ORTHO05D004458 1.2e-11 72.8 50 72.0
BolC9t60162H Brassica oleracea HOM05D003730 ORTHO05D004458 1.2e-11 72.8 50 72.0
Carub.0006s0108 Capsella rubella HOM05D003730 ORTHO05D004458 1.6e-11 72.4 50 70.0
Thhalv10014474m.g Eutrema salsugineum HOM05D003730 ORTHO05D004458 1.6e-11 72.4 50 70.0
ClCG04G008110 Citrullus lanatus HOM05D003730 ORTHO05D004458 2.1e-11 72.0 50 70.0
MELO3C003137.2 Cucumis melo HOM05D003730 ORTHO05D004458 2.1e-11 72.0 50 70.0
CsaV3_4G025080 Cucumis sativus L. HOM05D003730 ORTHO05D004458 2.1e-11 72.0 50 70.0
Dinv35586 Davidia involucrata HOM05D003730 ORTHO05D004458 2.7e-11 71.6 50 68.0
PGR031G0852 Punica granatum HOM05D003730 ORTHO05D004458 2.7e-11 71.6 50 68.0
A10p33380 Brassica napus HOM05D003730 ORTHO05D004458 3.5e-11 71.2 50 70.0
TAR636G1862 Trochodendron aralioides HOM05D003730 ORTHO05D004458 3.5e-11 71.2 50 66.0
CSS0040011 Camellia sinensis var. sinensis HOM05D003730 ORTHO05D004458 4.6e-11 70.9 50 68.0
MBI14_g12122_MAGBIO Magnolia biondii HOM05D003730 ORTHO05D004458 4.6e-11 70.9 50 66.0
Sed0018240 Sechium edule HOM05D003730 ORTHO05D004458 4.6e-11 70.9 50 68.0
Aqoxy3G01130 Aquilegia oxysepala HOM05D003730 ORTHO05D004458 6.0e-11 70.5 52 65.4
AL6G11480 Arabidopsis lyrata HOM05D003730 ORTHO05D004458 6.0e-11 70.5 53 66.0
Nn2g13382 Nelumbo nucifera HOM05D003730 ORTHO05D004458 6.0e-11 70.5 50 66.0
Dinv37162 Davidia involucrata HOM05D003730 ORTHO05D004458 7.8e-11 70.1 50 66.0
RcHm_v2.0_Chr3g0466371 Rosa chinensis HOM05D003730 ORTHO05D004458 7.8e-11 70.1 50 68.0
Aqoxy2G02240 Aquilegia oxysepala HOM05D003730 ORTHO05D004458 1.0e-10 69.7 50 68.0
AT5G02240 Arabidopsis thaliana HOM05D003730 ORTHO05D004458 1.0e-10 69.7 50 68.0
A05p08310 Brassica napus HOM05D003730 ORTHO05D004458 1.0e-10 69.7 43 72.1
BraA05t19796Z Brassica rapa HOM05D003730 ORTHO05D004458 1.0e-10 69.7 43 72.1
BraA10t45369Z Brassica rapa HOM05D003730 ORTHO05D004458 1.0e-10 69.7 50 68.0
Thecc.05G037600 Theobroma cacao HOM05D003730 ORTHO05D004458 1.0e-10 69.7 47 66.0
Zm00001eb355850 Zea mays HOM05D003730 ORTHO05D004458 1.0e-10 69.7 43 72.1
ECA248G3650 Erigeron canadensis HOM05D003730 ORTHO05D004458 1.3e-10 69.3 43 74.4
Hma1.2p1_1889F.1_g306630 Hydrangea macrophylla HOM05D003730 ORTHO05D004458 1.3e-10 69.3 50 66.0
Lj3g0005938 Lotus japonicus HOM05D003730 ORTHO05D004458 1.3e-10 69.3 44 70.5
TPR.G5554 Trifolium pratense HOM05D003730 ORTHO05D004458 1.3e-10 69.3 44 68.2
THA.LOC104823415 Tarenaya hassleriana HOM05D003730 ORTHO05D004458 1.7e-10 68.9 43 69.8
Ca_27652_v3 Cicer arietinum L. HOM05D003730 ORTHO05D004458 2.3e-10 68.6 50 64.0
DCAR_012103 Daucus carota HOM05D003730 ORTHO05D004458 2.3e-10 68.6 50 66.0
Nitab4.5_0004639g0020 Nicotiana tabacum HOM05D003730 ORTHO05D004458 2.3e-10 68.6 50 66.0
Os05g0110300 Oryza sativa ssp. japonica HOM05D003730 ORTHO05D004458 2.3e-10 68.6 43 72.1
Psat7g235680 Pisum sativum HOM05D003730 ORTHO05D004458 2.3e-10 68.6 50 64.0
VMungo0331G0374 Vigna mungo HOM05D003730 ORTHO05D004458 2.3e-10 68.6 50 64.0
Oeu036136.3 Olea europaea HOM05D003730 ORTHO05D004458 3.0e-10 68.2 44 72.7
Sp4g20020 Schrenkiella parvula HOM05D003730 ORTHO05D004458 3.0e-10 68.2 43 69.8
Actinidia13152 Actinidia chinensis HOM05D003730 ORTHO05D004458 3.9e-10 67.8 44 68.2
CARHR211130 Cardamine hirsuta HOM05D003730 ORTHO05D004458 3.9e-10 67.8 50 68.0
Duzib093G1851 Durio zibethinus HOM05D003730 ORTHO05D004458 3.9e-10 67.8 50 66.0
Os03g0822200 Oryza sativa ssp. japonica HOM05D003730 ORTHO05D004458 3.9e-10 67.8 44 63.6
HPP92_018136 Vanilla planifolia HOM05D003730 ORTHO05D004458 3.9e-10 67.8 44 65.9
AT2G37660 Arabidopsis thaliana HOM05D003730 ORTHO05D004458 5.1e-10 67.4 43 69.8
Carub.0004s1959 Capsella rubella HOM05D003730 ORTHO05D004458 5.1e-10 67.4 43 69.8
CDE04G1817 Ceratophyllum demersum HOM05D003730 ORTHO05D004458 5.1e-10 67.4 44 70.5
FvH4_6g13500 Fragaria vesca HOM05D003730 ORTHO05D004458 5.1e-10 67.4 44 70.5
FAN02G4300 Fragaria x ananassa HOM05D003730 ORTHO05D004458 5.1e-10 67.4 44 70.5
FAN05G3435 Fragaria x ananassa HOM05D003730 ORTHO05D004458 5.1e-10 67.4 44 70.5
FAN09G4346 Fragaria x ananassa HOM05D003730 ORTHO05D004458 5.1e-10 67.4 44 70.5
FAN14G3205 Fragaria x ananassa HOM05D003730 ORTHO05D004458 5.1e-10 67.4 44 70.5
FAN14G3787 Fragaria x ananassa HOM05D003730 ORTHO05D004458 5.1e-10 67.4 44 70.5
Gohir.D09G150600 Gossypium hirsutum HOM05D003730 ORTHO05D004458 5.1e-10 67.4 49 65.3
Gorai.006G171900 Gossypium raimondii HOM05D003730 ORTHO05D004458 5.1e-10 67.4 49 65.3
HanXRQChr01g0003071 Helianthus annuus HOM05D003730 ORTHO05D004458 5.1e-10 67.4 43 69.8
Medtr4g021815 Medicago truncatula HOM05D003730 ORTHO05D004458 5.1e-10 67.4 44 68.2
SGA_v2.0_scaffold75G24956 Striga asiatica HOM05D000181 ORTHO05D003134 5.1e-10 67.4 48 68.8
Zm00001eb062770 Zea mays HOM05D003730 ORTHO05D004458 5.1e-10 67.4 50 60.0
ATR0559G007 Amborella trichopoda HOM05D003730 ORTHO05D004458 6.6e-10 67.0 50 58.0
BcaB02g09264 Brassica carinata HOM05D003730 ORTHO05D004458 6.6e-10 67.0 41 73.2
BcaB02g09265 Brassica carinata HOM05D003730 ORTHO05D004458 6.6e-10 67.0 41 73.2
CANSAT54G2707 Cannabis sativa HOM05D003730 ORTHO05D004458 6.6e-10 67.0 48 62.5
Duzib128G1894 Durio zibethinus HOM05D003730 ORTHO05D004458 6.6e-10 67.0 44 68.2
Gohir.A09G155032 Gossypium hirsutum HOM05D003730 ORTHO05D004458 6.6e-10 67.0 44 65.9
Aa31LG5G23160 Aethionema arabicum HOM05D003730 ORTHO05D004458 8.6e-10 66.6 41 73.2
BcaB06g29015 Brassica carinata HOM05D003730 ORTHO05D004458 8.6e-10 66.6 43 72.1
BcaB06g29016 Brassica carinata HOM05D003730 ORTHO05D004458 8.6e-10 66.6 43 72.1
BcaC02g07503 Brassica carinata HOM05D003730 ORTHO05D004458 8.6e-10 66.6 43 69.8
A04p28820 Brassica napus HOM05D003730 ORTHO05D004458 8.6e-10 66.6 43 69.8
C04p66100 Brassica napus HOM05D003730 ORTHO05D004458 8.6e-10 66.6 43 69.8
BolC4t28114H Brassica oleracea HOM05D003730 ORTHO05D004458 8.6e-10 66.6 43 69.8
BraA04t18359Z Brassica rapa HOM05D003730 ORTHO05D004458 8.6e-10 66.6 43 69.8
Ciclev10012166m.g Citrus clementina HOM05D003730 ORTHO05D004458 8.6e-10 66.6 44 68.2
Lalb_Chr12g0209561 Lupinus albus HOM05D003730 ORTHO05D004458 8.6e-10 66.6 44 68.2
Manes.09G092700 Manihot esculenta HOM05D003730 ORTHO05D004458 8.6e-10 66.6 43 67.4
PGSC0003DMG400008830 Solanum tuberosum HOM05D003730 ORTHO05D004458 8.6e-10 66.6 44 70.5
CAN.G1685.1 Capsicum annuum HOM05D003730 ORTHO05D004458 1.1e-09 66.2 44 70.5
DCAR_024060 Daucus carota HOM05D003730 ORTHO05D004458 1.1e-09 66.2 50 62.0
Glyma.18G182600 Glycine max HOM05D003730 ORTHO05D004458 1.1e-09 66.2 44 68.2
Lsat_1_v5_gn_5_149640 Lactuca sativa HOM05D003730 ORTHO05D004458 1.1e-09 66.2 44 70.5
Sopen09g005650 Solanum pennellii HOM05D003730 ORTHO05D004458 1.1e-09 66.2 44 70.5
AL4G34250 Arabidopsis lyrata HOM05D003730 ORTHO05D004458 1.5e-09 65.9 43 67.4
CiPaw.09G194500 Carya illinoinensis HOM05D003730 ORTHO05D004458 1.5e-09 65.9 47 66.0
Atru.chr8.1989 Acer truncatum HOM05D003730 ORTHO05D004458 1.9e-09 65.5 50 58.0
Ca_07559_v3 Cicer arietinum L. HOM05D003730 ORTHO05D004458 1.9e-09 65.5 50 64.0
COL.COLO4_14783 Corchorus olitorius HOM05D003730 ORTHO05D004458 1.9e-09 65.5 47 59.6
Glyma.07G133200 Glycine max HOM05D003730 ORTHO05D004458 1.9e-09 65.5 50 62.0
Oeu010095.1 Olea europaea HOM05D003730 ORTHO05D004458 1.9e-09 65.5 43 69.8
Aa31LG1G22500 Aethionema arabicum HOM05D005507 ORTHO05D007316 2.5e-09 65.1 50 68.0
Hma1.2p1_0936F.1_g238830 Hydrangea macrophylla HOM05D003730 ORTHO05D004458 2.5e-09 65.1 44 68.2
PSO339G5845 Papaver somniferum HOM05D003730 ORTHO05D004458 2.5e-09 65.1 50 62.0
PSO513G0074 Papaver somniferum HOM05D003730 ORTHO05D004458 2.5e-09 65.1 50 62.0
SMO141G0146 Selaginella moellendorffii HOM05D003730 ORTHO05D004458 2.5e-09 65.1 48 66.7
Solyc09g010930.4 Solanum lycopersicum HOM05D003730 ORTHO05D004458 2.5e-09 65.1 44 68.2
CDE08G1340 Ceratophyllum demersum HOM05D000714 ORTHO05D000544 3.3e-09 64.7 43 67.4
Lalb_Chr03g0042331 Lupinus albus HOM05D003730 ORTHO05D004458 3.3e-09 64.7 49 67.3
Peaxi162Scf00165g00819 Petunia axillaris HOM05D003730 ORTHO05D004458 3.3e-09 64.7 44 68.2
Phvul.008G119600 Phaseolus vulgaris HOM05D003730 ORTHO05D004458 3.3e-09 64.7 50 62.0
THA.LOC104816264 Tarenaya hassleriana HOM05D003730 ORTHO05D004458 3.3e-09 64.7 43 67.4
CARHR131920 Cardamine hirsuta HOM05D003730 ORTHO05D004458 4.3e-09 64.3 43 65.1
SalBow4G0960 Salvia bowleyana HOM05D003730 ORTHO05D004458 4.3e-09 64.3 50 62.0
arahy.Tifrunner.gnm1.ann1.E6NKCB Arachis hypogaea HOM05D003730 ORTHO05D004458 5.6e-09 63.9 44 65.9
arahy.Tifrunner.gnm1.ann1.L41CIL Arachis hypogaea HOM05D003730 ORTHO05D004458 5.6e-09 63.9 44 65.9
Thhalv10016917m.g Eutrema salsugineum HOM05D003730 ORTHO05D004458 5.6e-09 63.9 41 68.3
Lj2A93T84 Lonicera japonica HOM05D003730 ORTHO05D004458 5.6e-09 63.9 41 73.2
TPR.G1677 Trifolium pratense HOM05D003730 ORTHO05D004458 5.6e-09 63.9 50 64.0
GSVIVG01034152001 Vitis vinifera HOM05D003730 ORTHO05D004458 5.6e-09 63.9 50 58.0
Psat3g138600 Pisum sativum HOM05D003730 ORTHO05D004458 7.3e-09 63.5 50 62.0
QL07p048679 Quercus lobata HOM05D003730 ORTHO05D004458 7.3e-09 63.5 49 67.3
TWI74G0344 Tripterygium wilfordii HOM05D003730 ORTHO05D004458 7.3e-09 63.5 44 63.6
TWI77G0750 Tripterygium wilfordii HOM05D003730 ORTHO05D004458 7.3e-09 63.5 44 63.6
Lj3A966G51 Lonicera japonica HOM05D003730 ORTHO05D004458 9.5e-09 63.2 44 65.9
SEGI_20216 Sequoiadendron giganteum HOM05D003730 ORTHO05D004458 9.5e-09 63.2 40 70.0
TAR623G1158 Trochodendron aralioides HOM05D003730 ORTHO05D004458 9.5e-09 63.2 44 65.9
CiPaw.10G146400 Carya illinoinensis HOM05D003730 ORTHO05D004458 1.2e-08 62.8 47 66.0
Haze_20813 Corylus avellana HOM05D003730 ORTHO05D004458 1.2e-08 62.8 44 68.2
Migut.J00321 Erythranthe guttata HOM05D003730 ORTHO05D004458 1.6e-08 62.4 48 64.6
Cfa017360 Carpinus fangiana HOM05D003730 ORTHO05D004458 2.1e-08 62.0 44 65.9
Mapoly0187s0017 Marchantia polymorpha HOM05D003730 ORTHO05D004458 2.1e-08 62.0 39 69.2
Medtr7g062140 Medicago truncatula HOM05D003730 ORTHO05D004458 2.1e-08 62.0 50 62.0
Actinidia26475 Actinidia chinensis HOM05D003730 ORTHO05D004458 2.8e-08 61.6 50 58.0
arahy.Tifrunner.gnm1.ann1.CCZS04 Arachis hypogaea HOM05D003730 ORTHO05D004458 2.8e-08 61.6 50 58.0
arahy.Tifrunner.gnm1.ann1.D1PGNE Arachis hypogaea HOM05D003730 ORTHO05D004458 2.8e-08 61.6 50 58.0
Lj1g0003421 Lotus japonicus HOM05D003730 ORTHO05D004458 2.8e-08 61.6 43 65.1
Manes.08G088900 Manihot esculenta HOM05D003730 ORTHO05D004458 2.8e-08 61.6 43 65.1
MSTRG.5656 Avicennia marina HOM05D003730 ORTHO05D004458 3.6e-08 61.2 41 65.9
Phvul.010G011300 Phaseolus vulgaris HOM05D003730 ORTHO05D004458 3.6e-08 61.2 43 62.8
Sabra06G0066200 Salix brachista HOM05D003730 ORTHO05D004458 3.6e-08 61.2 43 67.4
Hund10632 Selenicereus undatus HOM05D003730 ORTHO05D004458 3.6e-08 61.2 50 60.0
vmacro20165 Vaccinium macrocarpon HOM05D003730 ORTHO05D004458 3.6e-08 61.2 50 58.0
AagrBONN_evm.TU.Sc2ySwM_117.3727 Anthoceros agrestis HOM05D003730 ORTHO05D004458 4.7e-08 60.8 44 63.6
PGR004G0886 Punica granatum HOM05D003730 ORTHO05D004458 4.7e-08 60.8 50 60.0
Rhsim05G0193900 Rhododendron simsii HOM05D003730 ORTHO05D004458 4.7e-08 60.8 50 60.0
Sc20g0005000 Simmondsia chinensis HOM05D003730 ORTHO05D004458 1.1e-07 59.7 44 63.6
Potri.006G086800 Populus trichocarpa HOM05D003730 ORTHO05D004458 1.4e-07 59.3 44 63.6
Pp3c15_16990 Physcomitrium patens HOM05D003730 ORTHO05D004458 1.8e-07 58.9 41 61.0
Pp3c9_11060 Physcomitrium patens HOM05D003730 ORTHO05D004458 1.8e-07 58.9 48 60.4
VMungo1383G3507 Vigna mungo HOM05D003730 ORTHO05D004458 1.8e-07 58.9 44 61.4
vmacro08647 Vaccinium macrocarpon HOM05D003730 ORTHO05D004458 2.4e-07 58.5 44 61.4
Eucgr.A01273 Eucalyptus grandis HOM05D003730 ORTHO05D004458 4.0e-07 57.8 57 50.9
CBR_g8964 Chara braunii HOM05D003730 ORTHO05D004458 5.2e-07 57.4 39 66.7
SMO118G0186 Selaginella moellendorffii HOM05D003730 ORTHO05D004458 6.8e-07 57.0 43 58.1
Pp3c14_3760 Physcomitrium patens HOM05D003730 ORTHO05D004458 2.0e-06 55.5 39 64.1
QL11p019359 Quercus lobata HOM05D003730 ORTHO05D015085 2.0e-06 55.5 45 57.8
unitig_8.g4054 Utricularia gibba HOM05D003730 ORTHO05D004458 3.4e-06 54.7 50 58.0
VMungo1383G0388 Vigna mungo HOM05D003730 ORTHO05D004458 3.4e-06 54.7 43 53.5
AUR62041751 Chenopodium quinoa HOM05D003730 ORTHO05D004458 4.4e-06 54.3 50 60.0
QL11p019363 Quercus lobata HOM05D003730 ORTHO05D015085 4.4e-06 54.3 44 59.1
AUR62041348 Chenopodium quinoa HOM05D003730 ORTHO05D004458 5.8e-06 53.9 44 61.4


User provided reference genes

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