Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g28400 Fragaria vesca HOM05D007060 ORTHO05D009087 4.1e-95 351.3 166 100.0
RcHm_v2.0_Chr1g0331951 Rosa chinensis HOM05D007060 ORTHO05D009087 2.4e-79 298.9 157 89.2
Prupe.4G266300 Prunus persica HOM05D007060 ORTHO05D009087 4.0e-74 281.6 161 81.4
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 3.5e-70 268.5 160 75.6
MD03G1165900 Malus domestica HOM05D007060 ORTHO05D009087 6.0e-70 267.7 161 75.2
Atru.chr12.1066 Acer truncatum HOM05D007060 ORTHO05D009087 1.9e-68 262.7 160 73.1
QL04p047886 Quercus lobata HOM05D007060 ORTHO05D009087 1.9e-68 262.7 161 74.5
CiPaw.13G043400 Carya illinoinensis HOM05D007060 ORTHO05D009087 1.2e-67 260.0 160 73.8
Dinv08415 Davidia involucrata HOM05D007060 ORTHO05D009087 2.1e-67 259.2 161 72.0
CANSAT56G2168 Cannabis sativa HOM05D007060 ORTHO05D009087 6.2e-67 257.7 158 74.7
Actinidia03837 Actinidia chinensis HOM05D007060 ORTHO05D009087 4.0e-66 255.0 161 71.4
THA.LOC104816472 Tarenaya hassleriana HOM05D007060 ORTHO05D009087 4.0e-66 255.0 159 71.7
ClCG05G021920 Citrullus lanatus HOM05D007060 ORTHO05D009087 2.0e-65 252.7 162 69.8
Phvul.007G138500 Phaseolus vulgaris HOM05D007060 ORTHO05D009087 2.0e-65 252.7 157 72.0
Lj5g0018387 Lotus japonicus HOM05D007060 ORTHO05D009087 4.4e-65 251.5 157 73.2
Cc02_g09400 Coffea canephora HOM05D007060 ORTHO05D009087 7.5e-65 250.8 161 69.6
Psat6g172000 Pisum sativum HOM05D007060 ORTHO05D009087 7.5e-65 250.8 157 74.5
Thhalv10020598m.g Eutrema salsugineum HOM05D007060 ORTHO05D009087 1.3e-64 250.0 158 72.2
Carub.0003s0986 Capsella rubella HOM05D007060 ORTHO05D009087 1.7e-64 249.6 158 72.8
Glyma.10G195800 Glycine max HOM05D007060 ORTHO05D009087 1.7e-64 249.6 157 72.0
TPR.G37861 Trifolium pratense HOM05D007060 ORTHO05D009087 3.7e-64 248.4 157 73.2
Cpa.g.sc54.25 Carica papaya HOM05D007060 ORTHO05D009087 4.9e-64 248.1 160 67.5
TAR623G0941 Trochodendron aralioides HOM05D007060 ORTHO05D009087 4.9e-64 248.1 165 69.7
Sp3g08940 Schrenkiella parvula HOM05D007060 ORTHO05D009087 6.4e-64 247.7 158 70.3
VMungo0720G1293 Vigna mungo HOM05D007060 ORTHO05D009087 6.4e-64 247.7 159 71.7
AL3G22100 Arabidopsis lyrata HOM05D007060 ORTHO05D009087 8.3e-64 247.3 158 70.9
CsaV3_5G035220 Cucumis sativus L. HOM05D007060 ORTHO05D009087 8.3e-64 247.3 164 67.7
TWI63G0697 Tripterygium wilfordii HOM05D007060 ORTHO05D009087 1.1e-63 246.9 159 70.4
MELO3C012336.2 Cucumis melo HOM05D007060 ORTHO05D009087 2.4e-63 245.7 164 66.5
Eucgr.G02680 Eucalyptus grandis HOM05D007060 ORTHO05D009087 2.4e-63 245.7 163 67.5
Potri.008G018200 Populus trichocarpa HOM05D007060 ORTHO05D009087 2.4e-63 245.7 160 68.8
Sed0007060 Sechium edule HOM05D007060 ORTHO05D009087 3.2e-63 245.4 160 68.8
Sabra08G0011800 Salix brachista HOM05D007060 ORTHO05D009087 5.4e-63 244.6 160 68.1
Medtr1g090540 Medicago truncatula HOM05D007060 ORTHO05D009087 7.1e-63 244.2 157 70.7
Solyc11g006560.3 Solanum lycopersicum HOM05D007060 ORTHO05D009087 9.2e-63 243.8 157 67.5
Ciclev10015484m.g Citrus clementina HOM05D007060 ORTHO05D009087 1.2e-62 243.4 174 66.1
Sopen11g002460 Solanum pennellii HOM05D007060 ORTHO05D009087 2.1e-62 242.7 157 67.5
Sopen11g002480 Solanum pennellii HOM05D007060 ORTHO05D009087 2.1e-62 242.7 157 67.5
Sopen11g002500 Solanum pennellii HOM05D007060 ORTHO05D009087 2.1e-62 242.7 157 67.5
CARHR085210 Cardamine hirsuta HOM05D007060 ORTHO05D009087 2.7e-62 242.3 158 70.3
CSS0002387 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 4.6e-62 241.5 162 69.8
CSS0005765 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 4.6e-62 241.5 162 69.1
CSS0014623 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 4.6e-62 241.5 162 69.8
CSS0035234 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 4.6e-62 241.5 162 69.8
CSS0037157 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 4.6e-62 241.5 162 69.8
CSS0046160 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 4.6e-62 241.5 162 69.8
Ca_10429_v3 Cicer arietinum L. HOM05D007060 ORTHO05D009087 4.6e-62 241.5 157 72.0
Gorai.N007800 Gossypium raimondii HOM05D007060 ORTHO05D009087 4.6e-62 241.5 161 67.7
Peaxi162Scf00725g00056 Petunia axillaris HOM05D007060 ORTHO05D010136 4.6e-62 241.5 162 68.5
Gohir.D06G177400 Gossypium hirsutum HOM05D007060 ORTHO05D009087 6.0e-62 241.1 160 68.1
CSS0035496 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 7.8e-62 240.7 162 69.1
CSS0037937 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 7.8e-62 240.7 162 69.1
CSS0040194 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 7.8e-62 240.7 162 69.1
Duzib106G1772 Durio zibethinus HOM05D007060 ORTHO05D009087 7.8e-62 240.7 174 63.2
GSVIVG01034635001 Vitis vinifera HOM05D007060 ORTHO05D009087 7.8e-62 240.7 157 66.9
CSS0028923 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.0e-61 240.4 162 69.8
CSS0031015 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.0e-61 240.4 162 69.1
AT3G10630 Arabidopsis thaliana HOM05D007060 ORTHO05D009087 2.3e-61 239.2 156 68.6
CSS0019796 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.3e-61 239.2 162 69.1
CSS0040116 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 3.0e-61 238.8 162 68.5
Lj3P923T49 Lonicera japonica HOM05D007060 ORTHO05D009087 3.0e-61 238.8 159 65.4
PGSC0003DMG400001998 Solanum tuberosum HOM05D007060 ORTHO05D009087 3.0e-61 238.8 157 65.6
DCAR_005120 Daucus carota HOM05D007060 ORTHO05D009087 5.1e-61 238.0 161 66.5
Hma1.2p1_0457F.1_g156870 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 8.6e-61 237.3 160 67.5
Manes.07G085000 Manihot esculenta HOM05D007060 ORTHO05D009087 1.5e-60 236.5 161 67.1
Rhsim03G0096200 Rhododendron simsii HOM05D007060 ORTHO05D009087 1.5e-60 236.5 175 62.9
Thecc.10G116400 Theobroma cacao HOM05D007060 ORTHO05D009087 3.3e-60 235.3 174 61.5
Nitab4.5_0007799g0060 Nicotiana tabacum HOM05D007060 ORTHO05D009087 4.3e-60 235.0 162 64.2
A01p41570 Brassica napus HOM05D007060 ORTHO05D009087 9.6e-60 233.8 158 69.0
Oeu033276.1 Olea europaea HOM05D007060 ORTHO05D009087 1.2e-59 233.4 161 64.6
BraA01t04232Z Brassica rapa HOM05D007060 ORTHO05D009087 2.1e-59 232.6 158 67.7
BolC1t05373H Brassica oleracea HOM05D007060 ORTHO05D009087 2.8e-59 232.3 159 67.3
Nitab4.5_0001781g0140 Nicotiana tabacum HOM05D007060 ORTHO05D009087 2.8e-59 232.3 162 64.2
COL.COLO4_07825 Corchorus olitorius HOM05D007060 ORTHO05D009087 3.6e-59 231.9 160 64.4
Nn6g34700 Nelumbo nucifera HOM05D007060 ORTHO05D009087 3.6e-59 231.9 161 67.7
PGR142G1122 Punica granatum HOM05D007060 ORTHO05D009087 1.4e-58 229.9 163 60.7
CAN.G143.24 Capsicum annuum HOM05D007060 ORTHO05D009087 4.0e-58 228.4 158 65.8
Migut.F00850 Erythranthe guttata HOM05D007060 ORTHO05D009087 5.2e-58 228.0 159 62.3
SalBow1G5690 Salvia bowleyana HOM05D007060 ORTHO05D009087 6.8e-58 227.6 159 62.3
Aqoxy1G00669 Aquilegia oxysepala HOM05D007060 ORTHO05D009087 8.9e-58 227.3 162 66.7
BcaB04g21186 Brassica carinata HOM05D007060 ORTHO05D009087 1.2e-57 226.9 157 66.9
MSTRG.9036 Avicennia marina HOM05D007060 ORTHO05D009087 1.5e-57 226.5 159 61.6
Lsat_1_v5_gn_2_105821 Lactuca sativa HOM05D007060 ORTHO05D009087 2.0e-57 226.1 161 63.4
Glyma.20G194300 Glycine max HOM05D007060 ORTHO05D009087 3.2e-55 218.8 157 65.6
HanXRQChr02g0053541 Helianthus annuus HOM05D007060 ORTHO05D009087 1.7e-53 213.0 157 61.1
ECA238G3502 Erigeron canadensis HOM05D007060 ORTHO05D009087 6.6e-53 211.1 162 61.7
SEGI_33772 Sequoiadendron giganteum HOM05D007060 ORTHO05D009087 4.3e-52 208.4 163 62.0
PGR142G0278 Punica granatum HOM05D007060 ORTHO05D009087 1.3e-51 206.8 163 58.3
ATR0772G206 Amborella trichopoda HOM05D007060 ORTHO05D009087 1.4e-50 203.4 158 55.1
CDE06G1445 Ceratophyllum demersum HOM05D007060 ORTHO05D009087 2.4e-50 202.6 162 56.8
unitig_46.g18644 Utricularia gibba HOM05D007060 ORTHO05D009087 2.4e-50 202.6 158 57.0
Os09g0296700 Oryza sativa ssp. japonica HOM05D007060 ORTHO05D009087 4.9e-48 194.9 164 56.1
Zm00001eb309100 Zea mays HOM05D007060 ORTHO05D009087 4.2e-47 191.8 164 54.9
Pp3c6_17860 Physcomitrium patens HOM05D007060 ORTHO05D009087 6.2e-43 177.9 140 56.4
SMO203G0203 Selaginella moellendorffii HOM05D007060 ORTHO05D009087 3.4e-41 172.2 162 52.5
Lalb_Chr21g0312821 Lupinus albus HOM05D007060 ORTHO05D009087 3.2e-39 165.6 103 74.8
SHI22512 Sapria himalayana HOM05D007060 ORTHO05D009087 3.2e-39 165.6 128 60.2
AagrBONN_evm.TU.Sc2ySwM_344.3615 Anthoceros agrestis HOM05D007060 ORTHO05D009087 9.3e-39 164.1 159 48.4
MCO11G427 Micromonas commoda HOM05D007060 ORTHO05D009087 2.5e-31 139.4 171 42.1
Cre02.g118801 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 6.1e-22 108.2 157 38.2
CBR_g29369 Chara braunii HOM05D007060 ORTHO05D009087 3.9e-21 105.5 110 50.0
HPP92_006362 Vanilla planifolia HOM05D007060 ORTHO05D009087 3.1e-18 95.9 62 62.9
PRCOL_00001658 Prasinoderma coloniale HOM05D007060 ORTHO05D009087 6.5e-16 88.2 195 30.8
TAR625G0310 Trochodendron aralioides HOM05D007060 ORTHO05D009087 1.1e-12 77.4 43 74.4
Cre09.g386732 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 2.6e-09 66.2 121 32.2


User provided reference genes

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