Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g27720 Fragaria vesca HOM05D004282 ORTHO05D006804 0.0e+00 1083.6 535 100.0
FAN08G1277 Fragaria x ananassa HOM05D004282 ORTHO05D006804 0.0e+00 1076.2 535 99.3
FAN18G3468 Fragaria x ananassa HOM05D004282 ORTHO05D006804 0.0e+00 1075.1 542 98.5
FAN13G2512 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.6e-310 1068.5 535 98.3
FAN04G0421 Fragaria x ananassa HOM05D004282 ORTHO05D006804 8.1e-310 1066.2 535 98.3
RcHm_v2.0_Chr7g0219471 Rosa chinensis HOM05D004282 ORTHO05D006804 3.0e-304 1047.7 535 96.3
MD06G1084500 Malus domestica HOM05D004282 ORTHO05D006804 6.2e-286 986.9 535 89.3
MD14G1105600 Malus domestica HOM05D004282 ORTHO05D006804 3.1e-285 984.6 535 89.2
Prupe.5G100800 Prunus persica HOM05D004282 ORTHO05D006804 6.9e-285 983.4 535 89.7
PGR042G2758 Punica granatum HOM05D004282 ORTHO05D006804 2.9e-283 978.0 535 88.0
Eucgr.E00626 Eucalyptus grandis HOM05D004282 ORTHO05D006804 1.7e-280 968.8 535 88.6
QL12p032840 Quercus lobata HOM05D004282 ORTHO05D006804 4.8e-278 960.7 534 87.1
ClCG01G002660 Citrullus lanatus HOM05D004282 ORTHO05D006804 6.2e-278 960.3 535 86.4
MELO3C005680.2 Cucumis melo HOM05D004282 ORTHO05D006804 8.1e-278 959.9 535 86.5
CiPaw.11G134600 Carya illinoinensis HOM05D004282 ORTHO05D006804 4.0e-277 957.6 537 87.2
COL.COLO4_34472 Corchorus olitorius HOM05D004282 ORTHO05D006804 5.3e-277 957.2 535 86.5
Gorai.003G158400 Gossypium raimondii HOM05D004282 ORTHO05D006804 5.3e-277 957.2 535 86.0
CsaV3_5G002770 Cucumis sativus L. HOM05D004282 ORTHO05D006804 6.9e-277 956.8 535 86.2
Gohir.A03G016700 Gossypium hirsutum HOM05D004282 ORTHO05D006804 9.0e-277 956.4 535 85.8
Gohir.D03G151200 Gossypium hirsutum HOM05D004282 ORTHO05D006804 5.8e-276 953.7 535 85.6
Manes.02G019600 Manihot esculenta HOM05D004282 ORTHO05D006804 2.9e-275 951.4 535 85.2
Duzib068G0684 Durio zibethinus HOM05D004282 ORTHO05D006804 3.8e-275 951.0 535 85.2
Duzib084G1154 Durio zibethinus HOM05D004282 ORTHO05D006804 6.4e-275 950.3 535 85.8
Dinv37635 Davidia involucrata HOM05D004282 ORTHO05D006804 5.5e-274 947.2 535 85.6
arahy.Tifrunner.gnm1.ann1.G1AAHV Arachis hypogaea HOM05D004282 ORTHO05D006804 9.3e-274 946.4 535 85.8
Thecc.03G279500 Theobroma cacao HOM05D004282 ORTHO05D006804 9.3e-274 946.4 535 84.9
Cfa012224 Carpinus fangiana HOM05D004282 ORTHO05D006804 2.1e-273 945.3 537 86.2
Gohir.D08G201400 Gossypium hirsutum HOM05D004282 ORTHO05D006804 2.1e-273 945.3 535 85.6
Potri.003G128200 Populus trichocarpa HOM05D004282 ORTHO05D006804 6.0e-273 943.7 535 84.9
Lalb_Chr05g0224721 Lupinus albus HOM05D004282 ORTHO05D006804 7.9e-273 943.3 535 85.4
arahy.Tifrunner.gnm1.ann1.4VFV1G Arachis hypogaea HOM05D004282 ORTHO05D006804 2.3e-272 941.8 535 85.2
TWI81G0763 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 8.7e-272 939.9 535 84.9
Sabra03G0091200 Salix brachista HOM05D004282 ORTHO05D006804 1.5e-271 939.1 535 84.7
Sed0021454 Sechium edule HOM05D004282 ORTHO05D006804 1.9e-271 938.7 535 84.1
Ca_17527_v3 Cicer arietinum L. HOM05D004282 ORTHO05D006804 2.5e-271 938.3 535 84.5
TPR.G12833 Trifolium pratense HOM05D004282 ORTHO05D006804 7.4e-271 936.8 535 84.3
VMungo0251G3615 Vigna mungo HOM05D004282 ORTHO05D006804 1.6e-270 935.6 535 84.9
Lj8A221T67 Lonicera japonica HOM05D004282 ORTHO05D006804 2.8e-270 934.9 536 84.9
Lj4g0008271 Lotus japonicus HOM05D004282 ORTHO05D006804 2.8e-270 934.9 535 84.5
TAR374G0019 Trochodendron aralioides HOM05D004282 ORTHO05D006804 2.8e-270 934.9 535 83.4
Sc01g0009620 Simmondsia chinensis HOM05D004282 ORTHO05D006804 8.1e-270 933.3 535 85.0
Aqoxy7G00313 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 3.1e-269 931.4 535 83.2
Glyma.05G208400 Glycine max HOM05D004282 ORTHO05D006804 3.1e-269 931.4 535 84.5
Phvul.002G290100 Phaseolus vulgaris HOM05D004282 ORTHO05D006804 3.1e-269 931.4 535 85.0
Rhsim02G0231700 Rhododendron simsii HOM05D004282 ORTHO05D006804 3.1e-269 931.4 536 84.0
Manes.08G013300 Manihot esculenta HOM05D004282 ORTHO05D006804 4.0e-269 931.0 529 85.1
TWI60G0060 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 4.0e-269 931.0 535 84.7
CANSAT21G1770 Cannabis sativa HOM05D004282 ORTHO05D006804 1.5e-268 929.1 535 83.9
HanXRQChr13g0394231 Helianthus annuus HOM05D004282 ORTHO05D006804 1.5e-268 929.1 536 83.4
Actinidia02002 Actinidia chinensis HOM05D004282 ORTHO05D006804 2.6e-268 928.3 535 83.4
Hund14799 Selenicereus undatus HOM05D004282 ORTHO05D006804 4.5e-268 927.5 540 82.8
TAR375G0364 Trochodendron aralioides HOM05D004282 ORTHO05D006804 4.5e-268 927.5 535 83.0
Medtr8g098325 Medicago truncatula HOM05D004282 ORTHO05D006804 7.6e-268 926.8 535 83.0
DCAR_006738 Daucus carota HOM05D004282 ORTHO05D006804 1.3e-267 926.0 535 83.6
DCAR_006739 Daucus carota HOM05D004282 ORTHO05D006804 1.3e-267 926.0 535 83.6
Atru.chr9.2181 Acer truncatum HOM05D004282 ORTHO05D006804 4.9e-267 924.1 529 83.6
Hma1.2p1_0209F.1_g088780 Hydrangea macrophylla HOM05D004282 ORTHO05D006804 6.5e-267 923.7 534 84.1
Gorai.004G212300 Gossypium raimondii HOM05D004282 ORTHO05D006804 7.1e-266 920.2 535 84.1
Ciclev10019676m.g Citrus clementina HOM05D004282 ORTHO05D006804 1.6e-265 919.1 529 83.2
CSS0007959 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 2.7e-265 918.3 535 83.0
CSS0014359 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 2.7e-265 918.3 535 83.0
Lsat_1_v5_gn_3_6581 Lactuca sativa HOM05D004282 ORTHO05D006804 7.9e-265 916.8 536 82.3
Aqoxy2G03117 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 1.8e-264 915.6 536 82.6
HanXRQChr06g0165861 Helianthus annuus HOM05D004282 ORTHO05D006804 1.8e-264 915.6 534 83.0
CARHR047680 Cardamine hirsuta HOM05D004282 ORTHO05D006804 2.3e-264 915.2 535 83.9
Psat7g032640 Pisum sativum HOM05D004282 ORTHO05D006804 3.0e-264 914.8 535 82.2
THA.LOC104809396 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 5.1e-264 914.1 535 82.6
Nn6g33428 Nelumbo nucifera HOM05D004282 ORTHO05D006804 8.7e-264 913.3 535 82.1
PGSC0003DMG400012205 Solanum tuberosum HOM05D004282 ORTHO05D006804 1.9e-263 912.1 537 81.2
Lsat_1_v5_gn_6_6601 Lactuca sativa HOM05D004282 ORTHO05D006804 2.5e-263 911.8 536 82.3
Sopen08g029450 Solanum pennellii HOM05D004282 ORTHO05D006804 2.5e-263 911.8 537 80.8
AUR62009455 Chenopodium quinoa HOM05D004282 ORTHO05D006804 5.7e-263 910.6 536 83.2
Solyc08g081150.4 Solanum lycopersicum HOM05D004282 ORTHO05D006804 5.7e-263 910.6 537 81.0
Thhalv10023408m.g Eutrema salsugineum HOM05D004282 ORTHO05D006804 9.6e-263 909.8 535 83.2
Sp2g01000 Schrenkiella parvula HOM05D004282 ORTHO05D006804 1.3e-262 909.4 535 83.2
Carub.0002s0119 Capsella rubella HOM05D004282 ORTHO05D006804 3.7e-262 907.9 535 83.0
AUR62023137 Chenopodium quinoa HOM05D004282 ORTHO05D006804 3.7e-262 907.9 536 82.6
AT1G63660 Arabidopsis thaliana HOM05D004282 ORTHO05D006804 4.8e-262 907.5 535 83.2
AL2G11570 Arabidopsis lyrata HOM05D004282 ORTHO05D006804 6.3e-262 907.1 535 83.2
THA.LOC104817993 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 6.3e-262 907.1 530 83.0
EL10Ac2g04411 Beta vulgaris HOM05D004282 ORTHO05D006804 1.4e-261 906.0 536 81.5
C09p18660 Brassica napus HOM05D004282 ORTHO05D006804 4.1e-261 904.4 536 83.0
Aa31LG2G870 Aethionema arabicum HOM05D004282 ORTHO05D006804 6.9e-261 903.7 535 82.1
DCAR_008399 Daucus carota HOM05D004282 ORTHO05D006804 6.9e-261 903.7 536 82.5
Ah.10g038320 Amaranthus hybridus HOM05D004282 ORTHO05D006804 4.5e-260 901.0 536 81.9
Peaxi162Scf00119g00947 Petunia axillaris HOM05D004282 ORTHO05D006804 7.6e-260 900.2 531 81.9
ECA246G1826 Erigeron canadensis HOM05D004282 ORTHO05D006804 2.9e-259 898.3 537 79.9
CAN.G774.52 Capsicum annuum HOM05D004282 ORTHO05D006804 4.2e-258 894.4 528 80.3
BolC9t54762H Brassica oleracea HOM05D004282 ORTHO05D006804 2.7e-257 891.7 536 82.3
PSO782G4766 Papaver somniferum HOM05D004282 ORTHO05D006804 2.7e-257 891.7 533 80.5
A09p15390 Brassica napus HOM05D004282 ORTHO05D006804 6.1e-257 890.6 535 81.9
Migut.A00734 Erythranthe guttata HOM05D004282 ORTHO05D006804 6.1e-257 890.6 535 78.9
MSTRG.11981 Avicennia marina HOM05D004282 ORTHO05D006804 7.9e-257 890.2 535 79.6
BraA09t37181Z Brassica rapa HOM05D004282 ORTHO05D006804 7.9e-257 890.2 535 81.7
PSO478G3502 Papaver somniferum HOM05D004282 ORTHO05D006804 1.8e-256 889.0 533 79.9
ECA233G0272 Erigeron canadensis HOM05D004282 ORTHO05D006804 3.0e-256 888.3 536 80.6
SGA_v2.0_scaffold173G39175 Striga asiatica HOM05D004282 ORTHO05D006804 9.7e-255 883.2 536 78.7
Nitab4.5_0001615g0080 Nicotiana tabacum HOM05D004282 ORTHO05D006804 1.3e-254 882.9 558 77.4
Cc08_g14800 Coffea canephora HOM05D004282 ORTHO05D006804 2.2e-254 882.1 535 78.9
Oeu019186.1 Olea europaea HOM05D004282 ORTHO05D006804 4.8e-254 880.9 535 78.1
Nitab4.5_0000678g0110 Nicotiana tabacum HOM05D004282 ORTHO05D006804 1.1e-253 879.8 558 76.9
SHI07141 Sapria himalayana HOM05D004282 ORTHO05D006804 5.9e-252 874.0 529 78.3
Haze_08786 Corylus avellana HOM05D004282 ORTHO05D006804 1.4e-250 869.4 496 85.9
vmacro11363 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 2.5e-250 868.6 682 66.0
Glyma.08G015000 Glycine max HOM05D004282 ORTHO05D006804 1.1e-247 859.8 494 84.8
Gohir.A08G182900 Gossypium hirsutum HOM05D004282 ORTHO05D006804 4.4e-247 857.8 493 84.8
Os08g0326600 Oryza sativa ssp. japonica HOM05D004282 ORTHO05D006804 8.2e-246 853.6 528 76.9
unitig_578.g16628 Utricularia gibba HOM05D004282 ORTHO05D006804 1.8e-245 852.4 530 77.2
MBI17_g24637_MAGBIO Magnolia biondii HOM05D004282 ORTHO05D006804 5.3e-245 850.9 533 78.6
Zm00001eb434370 Zea mays HOM05D004282 ORTHO05D006804 3.8e-243 844.7 528 77.1
GSVIVG01019748001 Vitis vinifera HOM05D004282 ORTHO05D006804 1.4e-240 836.3 535 77.2
vmacro22817 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 3.9e-240 834.7 666 65.5
Oeu009150.1 Olea europaea HOM05D004282 ORTHO05D006804 5.2e-232 807.7 539 72.9
ATR1101G056 Amborella trichopoda HOM05D004282 ORTHO05D006804 1.6e-228 796.2 559 69.4
AagrBONN_evm.TU.Sc2ySwM_344.3490 Anthoceros agrestis HOM05D004282 ORTHO05D006804 2.3e-224 782.3 525 70.5
Pp3c8_7320 Physcomitrium patens HOM05D004282 ORTHO05D006804 2.0e-220 769.2 531 67.8
Lj2A0T39 Lonicera japonica HOM05D004282 ORTHO05D006804 1.3e-219 766.5 536 73.1
CBR_g48399 Chara braunii HOM05D004282 ORTHO05D006804 3.8e-219 765.0 526 69.6
Mapoly0002s0326 Marchantia polymorpha HOM05D004282 ORTHO05D006804 3.8e-219 765.0 530 68.5
SMO116G0368 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 8.6e-211 737.3 535 65.6
Lj2A185G23 Lonicera japonica HOM05D004282 ORTHO05D006804 2.1e-209 732.6 441 81.4
MCO08G312 Micromonas commoda HOM05D004282 ORTHO05D006804 1.7e-206 723.0 531 64.2
Cre02.g092900 Chlamydomonas reinhardtii HOM05D004282 ORTHO05D006804 1.2e-199 700.3 527 64.1
CDE06G0245 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 4.4e-199 698.4 404 81.2
PRCOL_00000667 Prasinoderma coloniale HOM05D004282 ORTHO05D006804 4.1e-197 691.8 525 63.6
BcaNung07334 Brassica carinata HOM05D004282 ORTHO05D006804 2.6e-191 672.5 374 86.6
HPP92_014989 Vanilla planifolia HOM05D004282 ORTHO05D006804 1.4e-189 666.8 497 65.8
CDE06G1269 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 3.4e-183 645.6 496 67.1
CiPaw.12G092600 Carya illinoinensis HOM05D004282 ORTHO05D006804 1.5e-170 603.6 422 71.6
Sabra01G0078200 Salix brachista HOM05D004282 ORTHO05D006804 2.7e-164 582.8 712 50.3
Cpa.g.c40776 Carica papaya HOM05D004282 ORTHO05D006804 6.3e-145 518.5 299 83.6
Cfa023610 Carpinus fangiana HOM05D004282 ORTHO05D006804 6.1e-132 475.3 537 50.5
SEGI_10668 Sequoiadendron giganteum HOM05D004282 ORTHO05D006804 6.5e-126 455.3 312 72.1
SMO165G0029 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 1.1e-120 438.0 537 47.9
Pp3c3_31480 Physcomitrium patens HOM05D004282 ORTHO05D006804 3.3e-101 373.2 411 49.6
CDE02G0075 Ceratophyllum demersum HOM05D004282 ORTHO05D021217 4.0e-99 366.3 262 69.1
Cpa.g.sc74.54 Carica papaya HOM05D004282 ORTHO05D022242 5.8e-82 309.3 211 73.5
Actinidia14566 Actinidia chinensis HOM05D004282 ORTHO05D017169 2.2e-65 254.2 148 81.8
ECA233G3991 Erigeron canadensis HOM05D004282 ORTHO05D006804 3.5e-63 246.9 148 79.1
CDE02G2749 Ceratophyllum demersum HOM05D004282 ORTHO05D022242 6.0e-47 193.0 140 67.1
ATR0680G380 Amborella trichopoda HOM05D004282 ORTHO05D006804 2.7e-39 167.5 166 50.6
QL09p052209 Quercus lobata HOM05D004282 ORTHO05D022242 6.7e-38 162.9 104 78.8
GSVIVG01010145001 Vitis vinifera HOM05D004282 ORTHO05D021217 8.7e-38 162.5 94 80.9
CANSAT64G0187 Cannabis sativa HOM05D004282 ORTHO05D006804 8.2e-36 156.0 103 76.7
ATR0680G421 Amborella trichopoda HOM05D004282 ORTHO05D021217 3.1e-35 154.1 109 71.6
TAR633G2425 Trochodendron aralioides HOM05D004282 ORTHO05D022242 1.8e-19 101.7 93 62.4
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 7.7e-18 96.3 119 47.1
RcHm_v2.0_Chr1g0356411 Rosa chinensis HOM05D004282 ORTHO05D341678 7.9e-15 86.3 58 75.9
RcHm_v2.0_Chr1g0321151 Rosa chinensis HOM05D004282 ORTHO05D022242 6.7e-14 83.2 48 89.6
RcHm_v2.0_Chr7g0219111 Rosa chinensis HOM05D004282 ORTHO05D022242 2.0e-13 81.6 75 68.0
Cc06_g21260 Coffea canephora HOM05D004282 ORTHO05D017169 1.7e-12 78.6 46 78.3
VMungo0464G0647 Vigna mungo HOM05D004282 ORTHO05D021217 1.8e-11 75.1 44 79.5
VMungo0540G0566 Vigna mungo HOM05D004282 ORTHO05D021217 1.8e-11 75.1 44 79.5
Dinv38937 Davidia involucrata HOM05D000151 ORTHO05D000074 2.4e-11 74.7 45 75.6
SGA_v2.0_scaffold43G16453 Striga asiatica HOM05D004282 ORTHO05D404191 6.1e-07 60.1 41 65.9
Ca_07210_v3 Cicer arietinum L. HOM05D004282 ORTHO05D147921 1.8e-06 58.5 65 44.6


User provided reference genes

Program Settings