Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g27520 Fragaria vesca HOM05D005857 ORTHO05D007193 1.0e-34 149.4 72 100.0
RcHm_v2.0_Chr7g0218891 Rosa chinensis HOM05D005857 ORTHO05D007193 1.2e-30 136.0 70 94.3
FAN13G1483 Fragaria x ananassa HOM05D005857 ORTHO05D007193 1.2e-27 125.9 61 98.4
FAN18G0749 Fragaria x ananassa HOM05D005857 ORTHO05D007193 6.0e-27 123.6 57 98.2
FAN04G0073 Fragaria x ananassa HOM05D005857 ORTHO05D007193 2.3e-26 121.7 57 96.5
COL.COLO4_31107 Corchorus olitorius HOM05D005857 ORTHO05D007193 3.0e-26 121.3 68 82.4
Thecc.06G020800 Theobroma cacao HOM05D005857 ORTHO05D007193 5.1e-26 120.6 68 86.8
Prupe.1G586500 Prunus persica HOM05D005857 ORTHO05D007193 2.5e-25 118.2 67 85.1
MD08G1249300 Malus domestica HOM05D005857 ORTHO05D007193 5.7e-25 117.1 59 91.5
MD15G1444100 Malus domestica HOM05D005857 ORTHO05D007193 7.4e-25 116.7 59 89.8
CsaV3_5G027560 Cucumis sativus L. HOM05D005857 ORTHO05D007193 1.3e-24 115.9 74 75.7
Manes.14G164233 Manihot esculenta HOM05D005857 ORTHO05D007193 1.3e-24 115.9 67 79.1
Potri.004G229900 Populus trichocarpa HOM05D005857 ORTHO05D007193 1.3e-24 115.9 69 84.1
Gohir.A05G160000 Gossypium hirsutum HOM05D005857 ORTHO05D007193 2.1e-24 115.2 58 87.9
Gohir.D05G162700 Gossypium hirsutum HOM05D005857 ORTHO05D007193 2.1e-24 115.2 58 87.9
Gorai.009G167700 Gossypium raimondii HOM05D005857 ORTHO05D007193 2.1e-24 115.2 58 87.9
SalBow1G1563 Salvia bowleyana HOM05D005857 ORTHO05D007193 2.1e-24 115.2 70 80.0
QL02p103650 Quercus lobata HOM05D005857 ORTHO05D007193 6.2e-24 113.6 69 76.8
CANSAT01G1822 Cannabis sativa HOM05D005857 ORTHO05D007193 8.2e-24 113.2 74 75.7
BcaC05g25348 Brassica carinata HOM05D005857 ORTHO05D007193 1.4e-23 112.5 68 73.5
TWI23G0165 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 1.4e-23 112.5 70 77.1
BcaB03g13096 Brassica carinata HOM05D005857 ORTHO05D007193 1.8e-23 112.1 67 74.6
Cpa.g.sc34.126 Carica papaya HOM05D005857 ORTHO05D007193 1.8e-23 112.1 69 75.4
Sed0006374 Sechium edule HOM05D005857 ORTHO05D007193 1.8e-23 112.1 69 76.8
TWI59G0768 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 1.8e-23 112.1 72 76.4
AL1G26340 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 4.0e-23 110.9 63 77.8
AT1G14450 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 4.0e-23 110.9 63 77.8
A06p10470 Brassica napus HOM05D005857 ORTHO05D007193 4.0e-23 110.9 63 77.8
C05p12250 Brassica napus HOM05D005857 ORTHO05D007193 4.0e-23 110.9 63 77.8
BraA06t24227Z Brassica rapa HOM05D005857 ORTHO05D007193 4.0e-23 110.9 63 77.8
FAN08G0400 Fragaria x ananassa HOM05D005857 ORTHO05D007193 4.0e-23 110.9 52 98.1
Manes.06G013700 Manihot esculenta HOM05D005857 ORTHO05D007193 5.3e-23 110.5 67 74.6
PGR042G3007 Punica granatum HOM05D005857 ORTHO05D007193 5.3e-23 110.5 72 72.2
CSS0006636 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 6.9e-23 110.2 59 83.1
CSS0043387 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 6.9e-23 110.2 59 83.1
Cfa004425 Carpinus fangiana HOM05D005857 ORTHO05D007193 6.9e-23 110.2 60 83.3
CiPaw.06G177300 Carya illinoinensis HOM05D005857 ORTHO05D007193 6.9e-23 110.2 68 76.5
Haze_09965 Corylus avellana HOM05D005857 ORTHO05D007193 6.9e-23 110.2 60 83.3
BcaB07g30330 Brassica carinata HOM05D005857 ORTHO05D007193 9.0e-23 109.8 63 77.8
C02p50660 Brassica napus HOM05D005857 ORTHO05D007193 9.0e-23 109.8 63 77.8
BolC2t11149H Brassica oleracea HOM05D005857 ORTHO05D007193 9.0e-23 109.8 63 77.8
BraA02t08316Z Brassica rapa HOM05D005857 ORTHO05D007193 9.0e-23 109.8 63 77.8
Carub.0005s0154 Capsella rubella HOM05D005857 ORTHO05D007193 9.0e-23 109.8 63 77.8
CARHR145070 Cardamine hirsuta HOM05D005857 ORTHO05D007193 9.0e-23 109.8 63 77.8
SGA_v2.0_scaffold100G29556 Striga asiatica HOM05D001195 ORTHO05D001138 9.0e-23 109.8 67 74.6
Aa31LG2G7600 Aethionema arabicum HOM05D005857 ORTHO05D007193 1.5e-22 109.0 63 76.2
AT2G02510 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 1.5e-22 109.0 63 76.2
BolC5t29979H Brassica oleracea HOM05D005857 ORTHO05D007193 1.5e-22 109.0 64 75.0
Sp1g12820 Schrenkiella parvula HOM05D005857 ORTHO05D007193 1.5e-22 109.0 64 75.0
BcaB08g34397 Brassica carinata HOM05D005857 ORTHO05D007193 2.0e-22 108.6 73 71.2
Duzib133G0295 Durio zibethinus HOM05D005857 ORTHO05D007193 2.0e-22 108.6 67 76.1
C08p16740 Brassica napus HOM05D005857 ORTHO05D007193 4.5e-22 107.5 67 71.6
Aqoxy5G01841 Aquilegia oxysepala HOM05D005857 ORTHO05D007193 5.8e-22 107.1 60 80.0
Oeu000158.1 Olea europaea HOM05D005857 ORTHO05D007193 5.8e-22 107.1 61 77.0
MD11G1276400 Malus domestica HOM05D005857 ORTHO05D007193 7.6e-22 106.7 72 75.0
PSO210G5758 Papaver somniferum HOM05D005857 ORTHO05D007193 7.6e-22 106.7 65 76.9
Migut.B00707 Erythranthe guttata HOM05D005857 ORTHO05D007193 1.0e-21 106.3 69 73.9
Nitab4.5_0006159g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.0e-21 106.3 67 71.6
Lalb_Chr12g0195891 Lupinus albus HOM05D005857 ORTHO05D007193 1.3e-21 105.9 61 82.0
Nitab4.5_0000521g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.3e-21 105.9 67 70.1
Oeu010607.1 Olea europaea HOM05D005857 ORTHO05D007193 1.3e-21 105.9 66 74.2
PSO447G0367 Papaver somniferum HOM05D005857 ORTHO05D007193 1.3e-21 105.9 65 75.4
Solyc01g102830.3 Solanum lycopersicum HOM05D005857 ORTHO05D007193 1.3e-21 105.9 67 71.6
Sopen01g045230 Solanum pennellii HOM05D005857 ORTHO05D007193 1.3e-21 105.9 67 71.6
TAR628G1233 Trochodendron aralioides HOM05D005857 ORTHO05D007193 1.3e-21 105.9 70 74.3
Thhalv10005238m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 1.7e-21 105.5 72 72.2
Lsat_1_v5_gn_9_83180 Lactuca sativa HOM05D005857 ORTHO05D007193 1.7e-21 105.5 67 74.6
AL5G11780 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 2.9e-21 104.8 63 71.4
BcaC03g17146 Brassica carinata HOM05D005857 ORTHO05D007193 2.9e-21 104.8 63 77.8
DCAR_001733 Daucus carota HOM05D005857 ORTHO05D007193 2.9e-21 104.8 68 69.1
Thhalv10009257m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 2.9e-21 104.8 63 76.2
PGSC0003DMG400018258 Solanum tuberosum HOM05D005857 ORTHO05D007193 2.9e-21 104.8 67 71.6
CARHR014900 Cardamine hirsuta HOM05D005857 ORTHO05D007193 3.8e-21 104.4 63 76.2
CiPaw.05G001000 Carya illinoinensis HOM05D005857 ORTHO05D007193 6.5e-21 103.6 67 71.6
Carub.0001s1416 Capsella rubella HOM05D005857 ORTHO05D007193 8.4e-21 103.2 63 71.4
Ciclev10003044m.g Citrus clementina HOM05D005857 ORTHO05D007193 8.4e-21 103.2 74 70.3
Ciclev10003046m.g Citrus clementina HOM05D005857 ORTHO05D007193 8.4e-21 103.2 74 70.3
Glyma.17G002300 Glycine max HOM05D005857 ORTHO05D007193 8.4e-21 103.2 58 82.8
Peaxi162Scf00194g01021 Petunia axillaris HOM05D005857 ORTHO05D007193 8.4e-21 103.2 56 80.4
THA.LOC104805131 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 8.4e-21 103.2 68 66.2
Sc03g0005520 Simmondsia chinensis HOM05D005857 ORTHO05D007193 1.4e-20 102.4 62 75.8
THA.LOC104801779 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 1.4e-20 102.4 68 67.6
Sp2g13760 Schrenkiella parvula HOM05D005857 ORTHO05D007193 1.9e-20 102.1 63 73.0
vmacro01623 Vaccinium macrocarpon HOM05D005857 ORTHO05D007193 2.5e-20 101.7 60 71.7
MBI03_g21081_MAGBIO Magnolia biondii HOM05D005857 ORTHO05D007193 4.2e-20 100.9 51 86.3
TPR.G6546 Trifolium pratense HOM05D005857 ORTHO05D007193 5.5e-20 100.5 66 74.2
ATR1089G102 Amborella trichopoda HOM05D005857 ORTHO05D007193 7.1e-20 100.1 52 84.6
CAN.G1379.7 Capsicum annuum HOM05D005857 ORTHO05D007193 7.1e-20 100.1 68 70.6
Zm00001eb244200 Zea mays HOM05D005857 ORTHO05D007193 7.1e-20 100.1 62 71.0
Os02g0564200 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 9.3e-20 99.8 64 67.2
HanXRQChr11g0343801 Helianthus annuus HOM05D005857 ORTHO05D007193 1.2e-19 99.4 63 71.4
Cc08_g11670 Coffea canephora HOM05D005857 ORTHO05D007193 1.6e-19 99.0 64 71.9
Lj4g0009904 Lotus japonicus HOM05D005857 ORTHO05D007193 1.6e-19 99.0 57 78.9
SHI07423 Sapria himalayana HOM05D005857 ORTHO05D007193 1.6e-19 99.0 56 76.8
ECA236G3879 Erigeron canadensis HOM05D005857 ORTHO05D007193 2.1e-19 98.6 68 67.6
Aa31LG1G600 Aethionema arabicum HOM05D005857 ORTHO05D007193 3.5e-19 97.8 70 65.7
Psat0s2555g0160 Pisum sativum HOM05D005857 ORTHO05D007193 3.5e-19 97.8 66 75.8
Medtr4g134550 Medicago truncatula HOM05D005857 ORTHO05D007193 4.6e-19 97.4 67 71.6
Atru.chr6.134 Acer truncatum HOM05D005857 ORTHO05D007193 6.1e-19 97.1 71 67.6
Atru.chr6.187 Acer truncatum HOM05D005857 ORTHO05D007193 6.1e-19 97.1 71 67.6
Ca_13524_v3 Cicer arietinum L. HOM05D005857 ORTHO05D007193 6.1e-19 97.1 72 66.7
Lsat_1_v5_gn_9_124880 Lactuca sativa HOM05D005857 ORTHO05D007193 1.8e-18 95.5 60 73.3
AUR62040136 Chenopodium quinoa HOM05D005857 ORTHO05D007193 2.3e-18 95.1 70 70.0
AUR62032483 Chenopodium quinoa HOM05D005857 ORTHO05D007193 6.7e-18 93.6 70 70.0
Phvul.003G091000 Phaseolus vulgaris HOM05D005857 ORTHO05D007193 1.9e-17 92.0 72 63.9
BcaC07g41575 Brassica carinata HOM05D005857 ORTHO05D007193 3.3e-17 91.3 64 64.1
HanXRQChr10g0285581 Helianthus annuus HOM05D005857 ORTHO05D007193 5.7e-17 90.5 63 65.1
Nitab4.5_0001085g0140 Nicotiana tabacum HOM05D005857 ORTHO05D007193 9.7e-17 89.7 60 66.7
Actinidia11730 Actinidia chinensis HOM05D005857 ORTHO05D007193 3.7e-16 87.8 45 86.7
Psat4g149960 Pisum sativum HOM05D005857 ORTHO05D007193 4.8e-16 87.4 66 69.7
Nitab4.5_0008987g0050 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.2e-14 82.8 53 67.9
unitig_8.g2962 Utricularia gibba HOM05D005857 ORTHO05D007193 1.5e-14 82.4 46 78.3
EL10Ac3g06399 Beta vulgaris HOM05D005857 ORTHO05D007193 2.6e-14 81.6 53 67.9
A02p32930 Brassica napus HOM05D005857 ORTHO05D007193 3.4e-14 81.3 54 72.2
Zm00001eb353890 Zea mays HOM05D005857 ORTHO05D007193 4.5e-14 80.9 50 70.0
Zm00001eb182520 Zea mays HOM05D005857 ORTHO05D007193 7.7e-14 80.1 64 56.2
Nitab4.5_0004030g0040 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.1e-12 76.3 53 60.4
BolC8t49293H Brassica oleracea HOM05D005857 ORTHO05D007193 9.4e-12 73.2 36 86.1
Zm00001eb203220 Zea mays HOM05D005857 ORTHO05D007193 2.1e-11 72.0 51 58.8
Zm00001eb203730 Zea mays HOM05D005857 ORTHO05D007193 6.1e-11 70.5 50 58.0
Pp3c9_5250 Physcomitrium patens HOM05D005857 ORTHO05D007193 7.9e-11 70.1 54 59.3
Pp3c15_3960 Physcomitrium patens HOM05D005857 ORTHO05D007193 6.7e-10 67.0 55 58.2
Os07g0175750 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 1.7e-08 62.4 46 58.7
Mapoly0052s0008 Marchantia polymorpha HOM05D005857 ORTHO05D007193 2.2e-08 62.0 39 69.2
GSVIVG01023132001 Vitis vinifera HOM05D005857 ORTHO05D007193 6.3e-08 60.5 28 89.3
Medtr2g036340 Medicago truncatula HOM05D005857 ORTHO05D007193 1.4e-07 59.3 57 50.9
Medtr8g046930 Medicago truncatula HOM05D005857 ORTHO05D007193 1.4e-07 59.3 57 50.9
AagrBONN_evm.TU.Sc2ySwM_369.408 Anthoceros agrestis HOM05D005857 ORTHO05D007193 3.1e-07 58.2 59 49.2


User provided reference genes

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