Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g27461 Fragaria vesca HOM05D007238 ORTHO05D009206 4.9e-82 307.8 156 100.0
Prupe.5G020000 Prunus persica HOM05D007238 ORTHO05D009206 4.1e-12 75.5 87 52.9
FvH4_5g23980 Fragaria vesca HOM05D007238 ORTHO05D009206 1.2e-11 73.9 64 64.1
FAN08G1858 Fragaria x ananassa HOM05D007238 ORTHO05D009206 1.2e-11 73.9 64 64.1
FAN18G0294 Fragaria x ananassa HOM05D007238 ORTHO05D009206 1.2e-11 73.9 64 64.1
FAN18G2161 Fragaria x ananassa HOM05D007238 ORTHO05D009206 1.2e-11 73.9 64 64.1
MD06G1015600 Malus domestica HOM05D007238 ORTHO05D009206 1.6e-11 73.6 68 60.3
FAN13G1136 Fragaria x ananassa HOM05D007238 ORTHO05D009206 2.6e-11 72.8 64 62.5
RcHm_v2.0_Chr7g0213421 Rosa chinensis HOM05D007238 ORTHO05D009206 5.9e-11 71.6 61 65.6
MD00G1002000 Malus domestica HOM05D007238 ORTHO05D009206 7.7e-11 71.2 66 60.6
Sabra03G0070300 Salix brachista HOM05D007238 ORTHO05D009206 1.3e-10 70.5 74 55.4
Lj8C334G11 Lonicera japonica HOM05D007238 ORTHO05D009206 2.5e-09 66.2 83 47.0
Potri.003G103100 Populus trichocarpa HOM05D007238 ORTHO05D009206 3.2e-09 65.9 84 46.4
CSS0038403 Camellia sinensis var. sinensis HOM05D007238 ORTHO05D009206 1.6e-08 63.5 63 55.6
Dinv28012 Davidia involucrata HOM05D007238 ORTHO05D009206 1.6e-08 63.5 82 50.0
Thecc.03G317700 Theobroma cacao HOM05D007238 ORTHO05D009206 1.6e-08 63.5 86 44.2
TWI36G0279 Tripterygium wilfordii HOM05D007238 ORTHO05D009206 2.7e-08 62.8 86 44.2
Oeu046801.1 Olea europaea HOM05D007238 ORTHO05D009206 4.7e-08 62.0 64 51.6
TWI56G0348 Tripterygium wilfordii HOM05D007238 ORTHO05D009206 4.7e-08 62.0 61 57.4
ECA233G5138 Erigeron canadensis HOM05D007238 ORTHO05D009206 6.1e-08 61.6 70 48.6
Sed0015204 Sechium edule HOM05D007238 ORTHO05D009206 8.0e-08 61.2 64 53.1
Gohir.A12G202500 Gossypium hirsutum HOM05D007238 ORTHO05D009206 1.0e-07 60.8 85 42.4
Gohir.D12G205200 Gossypium hirsutum HOM05D007238 ORTHO05D009206 1.0e-07 60.8 85 42.4
Gorai.008G220100 Gossypium raimondii HOM05D007238 ORTHO05D009206 1.0e-07 60.8 85 42.4
Duzib205G0751 Durio zibethinus HOM05D007238 ORTHO05D009206 1.4e-07 60.5 66 51.5
Glyma.01G149500 Glycine max HOM05D007238 ORTHO05D009206 1.4e-07 60.5 64 53.1
Hma1.2p1_0544F.1_g175540 Hydrangea macrophylla HOM05D007238 ORTHO05D009206 1.4e-07 60.5 88 43.2
Nitab4.5_0000030g0130 Nicotiana tabacum HOM05D007238 ORTHO05D009206 1.4e-07 60.5 65 52.3
Potri.001G130800 Populus trichocarpa HOM05D007238 ORTHO05D009206 1.8e-07 60.1 63 52.4
VMungo1215G3455 Vigna mungo HOM05D007238 ORTHO05D009206 1.8e-07 60.1 64 53.1
GSVIVG01022787001 Vitis vinifera HOM05D007238 ORTHO05D009206 1.8e-07 60.1 61 54.1
Atru.chr6.1480 Acer truncatum HOM05D007238 ORTHO05D009206 2.3e-07 59.7 77 48.1
Actinidia01264 Actinidia chinensis HOM05D007238 ORTHO05D009206 2.3e-07 59.7 61 55.7
Nitab4.5_0002930g0030 Nicotiana tabacum HOM05D007238 ORTHO05D009206 2.3e-07 59.7 64 51.6
Dinv22874 Davidia involucrata HOM05D007238 ORTHO05D009206 3.0e-07 59.3 102 40.2
CANSAT21G2527 Cannabis sativa HOM05D007238 ORTHO05D009206 4.0e-07 58.9 61 52.5
Glyma.09G213700 Glycine max HOM05D007238 ORTHO05D009206 5.2e-07 58.5 64 51.6
Lj2g0008424 Lotus japonicus HOM05D007238 ORTHO05D009206 6.7e-07 58.2 64 51.6
Phvul.002G128600 Phaseolus vulgaris HOM05D007238 ORTHO05D009206 6.7e-07 58.2 64 51.6
CAN.G1363.6 Capsicum annuum HOM05D007238 ORTHO05D009206 8.8e-07 57.8 68 47.1
Cpa.g.sc90.43 Carica papaya HOM05D007238 ORTHO05D009206 8.8e-07 57.8 51 60.8
Eucgr.D02592 Eucalyptus grandis HOM05D007238 ORTHO05D009206 1.2e-06 57.4 61 52.5
HanXRQChr03g0081381 Helianthus annuus HOM05D007238 ORTHO05D009206 1.5e-06 57.0 92 35.9
Aqoxy3G02024 Aquilegia oxysepala HOM05D007238 ORTHO05D009206 2.6e-06 56.2 62 51.6
PSO063G0400 Papaver somniferum HOM05D007238 ORTHO05D009206 2.6e-06 56.2 67 47.8
arahy.Tifrunner.gnm1.ann1.0046K4 Arachis hypogaea HOM05D007238 ORTHO05D009206 4.4e-06 55.5 64 50.0
arahy.Tifrunner.gnm1.ann1.BJTL8K Arachis hypogaea HOM05D007238 ORTHO05D009206 4.4e-06 55.5 64 50.0
HanXRQChr03g0081141 Helianthus annuus HOM05D007238 ORTHO05D009206 4.4e-06 55.5 64 50.0
PGSC0003DMG400030852 Solanum tuberosum HOM05D007238 ORTHO05D009206 4.4e-06 55.5 65 46.2
Ca_25102_v3 Cicer arietinum L. HOM05D007238 ORTHO05D009206 5.7e-06 55.1 62 51.6
Os06g0115600 Oryza sativa ssp. japonica HOM05D007238 ORTHO05D009206 7.5e-06 54.7 63 47.6
Psat2g142200 Pisum sativum HOM05D007238 ORTHO05D009206 7.5e-06 54.7 64 50.0
Hma1.2p1_1933F.1_g308070 Hydrangea macrophylla HOM05D007238 ORTHO05D009206 9.7e-06 54.3 61 49.2
Lalb_Chr05g0215441 Lupinus albus HOM05D007238 ORTHO05D009206 9.7e-06 54.3 64 48.4
TAR629G0677 Trochodendron aralioides HOM05D007238 ORTHO05D009206 9.7e-06 54.3 84 38.1


User provided reference genes

Program Settings