Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g27460 Fragaria vesca HOM05D007238 ORTHO05D009206 2.9e-31 137.9 67 100.0
FAN13G3012 Fragaria x ananassa HOM05D007238 ORTHO05D009206 3.1e-17 91.3 43 100.0
FvH4_5g23980 Fragaria vesca HOM05D007238 ORTHO05D009206 2.6e-16 88.2 48 87.5
FAN04G0931 Fragaria x ananassa HOM05D007238 ORTHO05D009206 2.6e-16 88.2 48 87.5
FAN08G1858 Fragaria x ananassa HOM05D007238 ORTHO05D009206 2.6e-16 88.2 48 87.5
FAN13G1136 Fragaria x ananassa HOM05D007238 ORTHO05D009206 2.6e-16 88.2 48 87.5
FAN18G0294 Fragaria x ananassa HOM05D007238 ORTHO05D009206 2.6e-16 88.2 48 87.5
RcHm_v2.0_Chr7g0213421 Rosa chinensis HOM05D007238 ORTHO05D009206 2.6e-16 88.2 48 87.5
FAN18G2161 Fragaria x ananassa HOM05D007238 ORTHO05D009206 4.9e-15 84.0 49 85.7
MD00G1002000 Malus domestica HOM05D007238 ORTHO05D009206 1.8e-12 75.5 48 77.1
Prupe.5G020000 Prunus persica HOM05D007238 ORTHO05D009206 1.5e-11 72.4 48 72.9
Atru.chr6.1480 Acer truncatum HOM05D007238 ORTHO05D009206 2.5e-11 71.6 48 72.9
MD06G1015600 Malus domestica HOM05D007238 ORTHO05D009206 3.3e-11 71.2 48 72.9
TAR629G0677 Trochodendron aralioides HOM05D007238 ORTHO05D009206 1.3e-10 69.3 48 66.7
GSVIVG01022787001 Vitis vinifera HOM05D007238 ORTHO05D009206 1.6e-10 68.9 46 67.4
Solyc08g075760.3 Solanum lycopersicum HOM05D007238 ORTHO05D009206 4.8e-10 67.4 45 68.9
Aqoxy3G02024 Aquilegia oxysepala HOM05D007238 ORTHO05D009206 8.2e-10 66.6 48 62.5
CSS0038403 Camellia sinensis var. sinensis HOM05D007238 ORTHO05D009206 8.2e-10 66.6 46 69.6
Sopen08g024410 Solanum pennellii HOM05D007238 ORTHO05D009206 1.1e-09 66.2 45 68.9
Thecc.03G317700 Theobroma cacao HOM05D007238 ORTHO05D009206 1.4e-09 65.9 46 65.2
Actinidia32774 Actinidia chinensis HOM05D007238 ORTHO05D009206 1.8e-09 65.5 46 69.6
Gohir.D12G205200 Gossypium hirsutum HOM05D007238 ORTHO05D009206 1.8e-09 65.5 45 71.1
Gorai.008G220100 Gossypium raimondii HOM05D007238 ORTHO05D009206 1.8e-09 65.5 45 71.1
Nitab4.5_0000030g0130 Nicotiana tabacum HOM05D007238 ORTHO05D009206 1.8e-09 65.5 46 67.4
Nitab4.5_0002930g0030 Nicotiana tabacum HOM05D007238 ORTHO05D009206 1.8e-09 65.5 46 67.4
CAN.G1363.6 Capsicum annuum HOM05D007238 ORTHO05D009206 3.1e-09 64.7 46 67.4
Potri.001G130800 Populus trichocarpa HOM05D007238 ORTHO05D009206 3.1e-09 64.7 46 67.4
Dinv22874 Davidia involucrata HOM05D007238 ORTHO05D009206 5.3e-09 63.9 46 69.6
Gohir.A12G202500 Gossypium hirsutum HOM05D007238 ORTHO05D009206 5.3e-09 63.9 45 68.9
Potri.003G103100 Populus trichocarpa HOM05D007238 ORTHO05D009206 5.3e-09 63.9 47 68.1
Rhsim11G0025000 Rhododendron simsii HOM05D007238 ORTHO05D009206 5.3e-09 63.9 46 65.2
CiPaw.12G071800 Carya illinoinensis HOM05D007238 ORTHO05D009206 9.0e-09 63.2 48 60.4
Cfa012591 Carpinus fangiana HOM05D007238 ORTHO05D009206 1.5e-08 62.4 46 63.0
Hma1.2p1_1933F.1_g308070 Hydrangea macrophylla HOM05D007238 ORTHO05D009206 1.5e-08 62.4 46 65.2
Haze_08066 Corylus avellana HOM05D007238 ORTHO05D009206 2.0e-08 62.0 46 63.0
Manes.17G003400 Manihot esculenta HOM05D007238 ORTHO05D009206 2.0e-08 62.0 48 66.7
Sabra03G0070300 Salix brachista HOM05D007238 ORTHO05D009206 2.0e-08 62.0 46 65.2
Cpa.g.sc90.44 Carica papaya HOM05D007238 ORTHO05D009206 4.5e-08 60.8 46 65.2
Actinidia01264 Actinidia chinensis HOM05D007238 ORTHO05D009206 5.8e-08 60.5 46 65.2
CANSAT21G2527 Cannabis sativa HOM05D007238 ORTHO05D009206 5.8e-08 60.5 46 58.7
Ciclev10000885m.g Citrus clementina HOM05D007238 ORTHO05D009206 7.6e-08 60.1 48 66.7
Cc08_g05060 Coffea canephora HOM05D007238 ORTHO05D009206 7.6e-08 60.1 41 65.9
Dinv28012 Davidia involucrata HOM05D007238 ORTHO05D009206 7.6e-08 60.1 46 65.2
Lj8C334G11 Lonicera japonica HOM05D007238 ORTHO05D009206 1.7e-07 58.9 46 63.0
Oeu046801.1 Olea europaea HOM05D007238 ORTHO05D009206 1.7e-07 58.9 43 69.8
PGR031G3591 Punica granatum HOM05D007238 ORTHO05D009206 4.9e-07 57.4 47 63.8
TWI36G0279 Tripterygium wilfordii HOM05D007238 ORTHO05D009206 4.9e-07 57.4 48 58.3
Eucgr.D02592 Eucalyptus grandis HOM05D007238 ORTHO05D009206 6.5e-07 57.0 46 58.7
HanXRQChr03g0081151 Helianthus annuus HOM05D007238 ORTHO05D009206 8.4e-07 56.6 46 56.5
SalBow8G0140 Salvia bowleyana HOM05D007238 ORTHO05D009206 8.4e-07 56.6 43 65.1
HanXRQChr03g0081381 Helianthus annuus HOM05D007238 ORTHO05D009206 1.4e-06 55.8 45 60.0
ATR0829G060 Amborella trichopoda HOM05D007238 ORTHO05D009206 3.2e-06 54.7 45 53.3
ECA233G5138 Erigeron canadensis HOM05D007238 ORTHO05D009206 3.2e-06 54.7 39 64.1
ClCG10G001020 Citrullus lanatus HOM05D007238 ORTHO05D009206 5.5e-06 53.9 40 62.5
Zm00001eb378870 Zea mays HOM05D007238 ORTHO05D009206 5.5e-06 53.9 39 64.1
Os06g0115600 Oryza sativa ssp. japonica HOM05D007238 ORTHO05D009206 7.1e-06 53.5 45 55.6


User provided reference genes

Program Settings