Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g26780 Fragaria vesca HOM05D005558 ORTHO05D006832 8.3e-105 383.6 184 100.0
FAN18G4437 Fragaria x ananassa HOM05D005558 ORTHO05D006832 8.3e-105 383.6 184 100.0
FAN04G1408 Fragaria x ananassa HOM05D005558 ORTHO05D006832 2.8e-100 368.6 184 97.3
FAN08G1374 Fragaria x ananassa HOM05D005558 ORTHO05D006832 3.6e-100 368.2 184 96.7
RcHm_v2.0_Chr7g0217691 Rosa chinensis HOM05D005558 ORTHO05D006832 6.6e-94 347.4 185 91.4
Prupe.5G000800 Prunus persica HOM05D005558 ORTHO05D006832 1.2e-79 300.1 172 83.1
QL02p016334 Quercus lobata HOM05D005558 ORTHO05D006832 2.7e-79 298.9 189 76.2
Carub.0001s2052 Capsella rubella HOM05D005558 ORTHO05D006832 3.5e-79 298.5 186 79.6
BcaB07g32099 Brassica carinata HOM05D005558 ORTHO05D006832 1.9e-77 292.7 184 76.6
BcaB03g12837 Brassica carinata HOM05D005558 ORTHO05D006832 3.3e-77 292.0 187 77.0
BcaC05g26014 Brassica carinata HOM05D005558 ORTHO05D006832 3.3e-77 292.0 186 76.9
BraA06t24816Z Brassica rapa HOM05D005558 ORTHO05D006832 3.3e-77 292.0 186 76.3
CiPaw.08G079200 Carya illinoinensis HOM05D005558 ORTHO05D006832 3.3e-77 292.0 184 76.6
AL1G34110 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 4.3e-77 291.6 168 83.3
Cfa014170 Carpinus fangiana HOM05D005558 ORTHO05D006832 5.6e-77 291.2 187 76.5
THA.LOC104813721 Tarenaya hassleriana HOM05D005558 ORTHO05D006832 5.6e-77 291.2 190 75.8
CANSAT25G0089 Cannabis sativa HOM05D005558 ORTHO05D006832 9.5e-77 290.4 172 81.4
A06p17130 Brassica napus HOM05D005558 ORTHO05D006832 1.2e-76 290.0 186 75.8
Thhalv10008709m.g Eutrema salsugineum HOM05D005558 ORTHO05D006832 1.2e-76 290.0 187 78.1
CARHR021510 Cardamine hirsuta HOM05D005558 ORTHO05D006832 1.6e-76 289.7 186 76.9
Sp1g18730 Schrenkiella parvula HOM05D005558 ORTHO05D006832 2.1e-76 289.3 185 77.3
Manes.18G000600 Manihot esculenta HOM05D005558 ORTHO05D006832 2.8e-76 288.9 189 75.1
AT1G21065 Arabidopsis thaliana HOM05D005558 ORTHO05D006832 3.6e-76 288.5 168 82.1
BolC8t49687H Brassica oleracea HOM05D005558 ORTHO05D006832 4.7e-76 288.1 169 81.7
A08p29100 Brassica napus HOM05D005558 ORTHO05D006832 6.2e-76 287.7 169 81.7
BraA08t34846Z Brassica rapa HOM05D005558 ORTHO05D006832 6.2e-76 287.7 169 81.7
BcaC07g39074 Brassica carinata HOM05D005558 ORTHO05D006832 2.3e-75 285.8 169 81.1
ClCG11G019260 Citrullus lanatus HOM05D005558 ORTHO05D006832 6.8e-75 284.3 183 73.8
Potri.002G001500 Populus trichocarpa HOM05D005558 ORTHO05D006832 6.8e-75 284.3 161 82.6
TWI12G1391 Tripterygium wilfordii HOM05D005558 ORTHO05D006832 1.5e-74 283.1 180 75.6
CsaV3_4G037850 Cucumis sativus L. HOM05D005558 ORTHO05D006832 4.4e-74 281.6 183 73.2
CiPaw.07G129900 Carya illinoinensis HOM05D005558 ORTHO05D006832 5.8e-74 281.2 192 74.5
Lsat_1_v5_gn_2_2740 Lactuca sativa HOM05D005558 ORTHO05D006832 9.9e-74 280.4 193 72.5
MD06G1057400 Malus domestica HOM05D005558 ORTHO05D006832 1.3e-73 280.0 182 74.7
PGR083G0867 Punica granatum HOM05D005558 ORTHO05D006832 1.7e-73 279.6 185 74.6
CSS0024776 Camellia sinensis var. sinensis HOM05D005558 ORTHO05D006832 1.1e-72 276.9 194 73.7
Duzib116G0928 Durio zibethinus HOM05D005558 ORTHO05D006832 1.1e-72 276.9 185 73.5
Gohir.D05G180800 Gossypium hirsutum HOM05D005558 ORTHO05D006832 1.1e-72 276.9 156 82.1
arahy.Tifrunner.gnm1.ann1.8D2970 Arachis hypogaea HOM05D005558 ORTHO05D006832 1.9e-72 276.2 183 72.1
Lalb_Chr05g0219661 Lupinus albus HOM05D005558 ORTHO05D006832 1.9e-72 276.2 146 84.2
Gohir.A05G177400 Gossypium hirsutum HOM05D005558 ORTHO05D006832 2.4e-72 275.8 186 73.1
Glyma.07G221200 Glycine max HOM05D005558 ORTHO05D006832 3.2e-72 275.4 156 81.4
Psat7g129880 Pisum sativum HOM05D005558 ORTHO05D006832 3.2e-72 275.4 167 77.8
Gorai.009G185800 Gossypium raimondii HOM05D005558 ORTHO05D006832 4.1e-72 275.0 186 72.6
arahy.Tifrunner.gnm1.ann1.GVHP98 Arachis hypogaea HOM05D005558 ORTHO05D006832 5.4e-72 274.6 181 72.4
Nn6g31548 Nelumbo nucifera HOM05D005558 ORTHO05D006832 5.4e-72 274.6 186 71.0
Sc17g0004140 Simmondsia chinensis HOM05D005558 ORTHO05D006832 5.4e-72 274.6 183 73.2
Thecc.08G097300 Theobroma cacao HOM05D005558 ORTHO05D006832 5.4e-72 274.6 169 77.5
TPR.G20977 Trifolium pratense HOM05D005558 ORTHO05D006832 5.4e-72 274.6 167 78.4
Ca_18758_v3 Cicer arietinum L. HOM05D005558 ORTHO05D006832 7.1e-72 274.2 173 77.5
PSO170G6225 Papaver somniferum HOM05D005558 ORTHO05D006832 7.1e-72 274.2 184 71.2
Ah.08g212310 Amaranthus hybridus HOM05D005558 ORTHO05D006832 9.2e-72 273.9 156 80.8
Eucgr.F01955 Eucalyptus grandis HOM05D005558 ORTHO05D006832 1.2e-71 273.5 216 65.3
Medtr4g084120 Medicago truncatula HOM05D005558 ORTHO05D006832 1.2e-71 273.5 166 77.1
PSO017G1036 Papaver somniferum HOM05D005558 ORTHO05D006832 1.2e-71 273.5 184 71.7
Lj4g0004166 Lotus japonicus HOM05D005558 ORTHO05D006832 1.6e-71 273.1 150 84.0
EL10Ac7g17248 Beta vulgaris HOM05D005558 ORTHO05D006832 2.1e-71 272.7 179 73.2
COL.COLO4_12262 Corchorus olitorius HOM05D005558 ORTHO05D006832 2.7e-71 272.3 186 72.0
Hma1.2p1_0914F.1_g236230 Hydrangea macrophylla HOM05D005558 ORTHO05D006832 3.5e-71 271.9 190 70.0
Cc10_g00070 Coffea canephora HOM05D005558 ORTHO05D006832 4.6e-71 271.6 146 83.6
Hund05339 Selenicereus undatus HOM05D005558 ORTHO05D006832 4.6e-71 271.6 182 72.0
Phvul.002G097800 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 7.8e-71 270.8 173 75.1
GSVIVG01013466001 Vitis vinifera HOM05D005558 ORTHO05D006832 1.0e-70 270.4 147 83.0
arahy.Tifrunner.gnm1.ann1.09GV4T Arachis hypogaea HOM05D005558 ORTHO05D006832 1.3e-70 270.0 155 80.6
arahy.Tifrunner.gnm1.ann1.H4MLSW Arachis hypogaea HOM05D005558 ORTHO05D006832 1.3e-70 270.0 155 80.6
MD07G1016000 Malus domestica HOM05D005558 ORTHO05D006832 1.3e-70 270.0 147 83.7
Sopen12g031670 Solanum pennellii HOM05D005558 ORTHO05D006832 1.3e-70 270.0 181 69.6
Solyc12g095770.2 Solanum lycopersicum HOM05D005558 ORTHO05D006832 1.7e-70 269.6 181 69.6
Rhsim06G0000500 Rhododendron simsii HOM05D005558 ORTHO05D006832 3.0e-70 268.9 234 62.0
MSTRG.24533 Avicennia marina HOM05D005558 ORTHO05D006832 3.9e-70 268.5 149 80.5
CAN.G208.43 Capsicum annuum HOM05D005558 ORTHO05D006832 6.6e-70 267.7 180 68.3
Nitab4.5_0003423g0040 Nicotiana tabacum HOM05D005558 ORTHO05D006832 1.1e-69 266.9 182 69.2
PGSC0003DMG400029397 Solanum tuberosum HOM05D005558 ORTHO05D006832 2.5e-69 265.8 145 79.3
Aqoxy5G00965 Aquilegia oxysepala HOM05D005558 ORTHO05D006832 5.6e-69 264.6 162 74.1
Glyma.15G161100 Glycine max HOM05D005558 ORTHO05D006832 1.2e-68 263.5 184 71.2
Migut.N03003 Erythranthe guttata HOM05D005558 ORTHO05D006832 2.8e-68 262.3 169 73.4
Peaxi162Scf00064g01430 Petunia axillaris HOM05D005558 ORTHO05D006832 8.1e-68 260.8 181 69.6
Os02g0187500 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 1.1e-67 260.4 142 81.0
Lalb_Chr15g0083971 Lupinus albus HOM05D005558 ORTHO05D006832 1.4e-67 260.0 173 74.6
ATR0605G185 Amborella trichopoda HOM05D005558 ORTHO05D006832 6.8e-67 257.7 151 76.2
SGA_v2.0_scaffold19G08925 Striga asiatica HOM05D005558 ORTHO05D006832 8.9e-67 257.3 145 80.0
Zm00001eb387340 Zea mays HOM05D005558 ORTHO05D006832 2.6e-66 255.8 156 72.4
HPP92_021698 Vanilla planifolia HOM05D005558 ORTHO05D006832 2.2e-65 252.7 141 77.3
Zm00001eb234660 Zea mays HOM05D005558 ORTHO05D006832 2.9e-65 252.3 142 76.1
HPP92_017798 Vanilla planifolia HOM05D005558 ORTHO05D006832 1.6e-63 246.5 173 66.5
SEGI_40156 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 1.3e-62 243.4 143 74.1
SMO259G0018 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 2.5e-61 239.2 140 72.1
C08p20580 Brassica napus HOM05D005558 ORTHO05D006832 3.3e-61 238.8 147 78.9
Mapoly0002s0034 Marchantia polymorpha HOM05D005558 ORTHO05D006832 3.3e-61 238.8 140 75.0
ECA238G0376 Erigeron canadensis HOM05D005558 ORTHO05D006832 5.6e-61 238.0 126 85.7
Pp3c1_31360 Physcomitrium patens HOM05D005558 ORTHO05D006832 9.6e-61 237.3 178 64.0
Sabra02G0001000 Salix brachista HOM05D005558 ORTHO05D006832 4.8e-60 235.0 160 73.8
BolC5t30678H Brassica oleracea HOM05D000370 ORTHO05D006832 4.0e-59 231.9 140 77.9
AUR62041000 Chenopodium quinoa HOM05D005558 ORTHO05D006832 4.0e-59 231.9 171 67.3
Atru.chr13.17 Acer truncatum HOM05D005558 ORTHO05D006832 6.9e-59 231.1 144 76.4
TAR381G1539 Trochodendron aralioides HOM05D005558 ORTHO05D006832 1.2e-58 230.3 160 70.6
HanXRQChr14g0427511 Helianthus annuus HOM05D005558 ORTHO05D006832 4.4e-58 228.4 158 70.9
Sed0017561 Sechium edule HOM05D005558 ORTHO05D006832 4.4e-58 228.4 152 71.7
Actinidia15539 Actinidia chinensis HOM05D005558 ORTHO05D006832 1.7e-57 226.5 124 83.1
MELO3C017079.2 Cucumis melo HOM05D005558 ORTHO05D006832 6.4e-57 224.6 119 84.0
Ciclev10002303m.g Citrus clementina HOM05D005558 ORTHO05D006832 3.2e-56 222.2 127 79.5
Nitab4.5_0001309g0160 Nicotiana tabacum HOM05D005558 ORTHO05D006832 3.2e-56 222.2 127 77.2
Lj4C814G4 Lonicera japonica HOM05D005558 ORTHO05D006832 1.3e-54 216.9 166 64.5
Prupe.5G000700 Prunus persica HOM05D005558 ORTHO05D006832 2.8e-52 209.1 120 80.0
Cre17.g739300 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 3.1e-51 205.7 140 64.3
SGA_v2.0_scaffold25G11031 Striga asiatica HOM05D005558 ORTHO05D006832 5.3e-51 204.9 167 62.9
Dinv05517 Davidia involucrata HOM05D005558 ORTHO05D006832 1.5e-50 203.4 152 67.8
VMungo0251G0776 Vigna mungo HOM05D005558 ORTHO05D006832 3.2e-48 195.7 118 78.0
Os06g0638200 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 6.7e-46 188.0 99 83.8
Phvul.009G240200 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 1.9e-45 186.4 147 63.3
Haze_22894 Corylus avellana HOM05D005558 ORTHO05D006832 1.6e-44 183.3 187 53.5
Pp3c2_25680 Physcomitrium patens HOM05D005558 ORTHO05D006832 3.2e-40 169.1 156 51.9
SMO203G0115 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 3.2e-40 169.1 177 48.0
SEGI_39286 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 7.1e-40 167.9 153 53.6
vmacro21735 Vaccinium macrocarpon HOM05D005558 ORTHO05D006832 7.1e-40 167.9 121 68.6
TAR376G0283 Trochodendron aralioides HOM05D005558 ORTHO05D006832 7.9e-39 164.5 93 83.9
Peaxi162Scf00064g01422 Petunia axillaris HOM05D005558 ORTHO05D006832 1.0e-38 164.1 120 65.8
Cre01.g043100 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 6.7e-38 161.4 179 46.4
Mapoly0065s0101 Marchantia polymorpha HOM05D005558 ORTHO05D006832 4.3e-37 158.7 186 47.8
Oeu000735.2 Olea europaea HOM05D005558 ORTHO05D006832 1.5e-34 150.2 89 75.3
Cfa023908 Carpinus fangiana HOM05D005558 ORTHO05D006832 1.7e-33 146.7 155 47.1
CDE04G3086 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 3.5e-31 139.0 173 45.7
SalBow6G6347 Salvia bowleyana HOM05D005558 ORTHO05D006832 1.3e-30 137.1 165 46.7
CBR_g570 Chara braunii HOM05D005558 ORTHO05D006832 1.1e-29 134.0 85 69.4
C05p19780 Brassica napus HOM05D005558 ORTHO05D006832 3.1e-27 125.9 59 89.8
AL8G17720 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 4.1e-27 125.6 72 83.3
MCO09G054 Micromonas commoda HOM05D005558 ORTHO05D006832 7.7e-26 121.3 149 43.0
AL5G16180 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 3.8e-25 119.0 70 81.4
BcaC07g39073 Brassica carinata HOM05D005558 ORTHO05D006832 4.6e-23 112.1 53 92.5
Aa31LG7G5210 Aethionema arabicum HOM05D005558 ORTHO05D006832 6.1e-23 111.7 171 43.3
HPP92_021704 Vanilla planifolia HOM05D005558 ORTHO05D006832 5.7e-21 105.1 118 44.9
AagrBONN_evm.TU.Sc2ySwM_344.2923 Anthoceros agrestis HOM05D005558 ORTHO05D006832 6.1e-15 85.1 77 55.8
Cpa.g.sc36.94 Carica papaya HOM05D005558 ORTHO05D006832 5.7e-13 78.6 125 44.8
PRCOL_00001425 Prasinoderma coloniale HOM05D005558 ORTHO05D006832 1.3e-12 77.4 145 31.0
Cre09.g396850 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D034498 2.6e-10 69.7 141 32.6
Cpa.g.sc36.93 Carica papaya HOM05D005558 ORTHO05D006832 5.0e-09 65.5 31 83.9
DCAR_022964 Daucus carota HOM05D005558 ORTHO05D006832 6.5e-09 65.1 88 51.1
PRCOL_00001511 Prasinoderma coloniale HOM05D005558 ORTHO05D034498 1.6e-07 60.5 154 29.2


User provided reference genes

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