Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g26440 Fragaria vesca HOM05D006245 ORTHO05D007260 2.3e-150 535.8 321 100.0
FAN13G0213 Fragaria x ananassa HOM05D006245 ORTHO05D007260 2.3e-150 535.8 321 100.0
FAN18G3272 Fragaria x ananassa HOM05D006245 ORTHO05D007260 6.6e-150 534.3 321 99.7
FAN04G2011 Fragaria x ananassa HOM05D006245 ORTHO05D007260 1.3e-145 520.0 321 91.0
FAN08G3087 Fragaria x ananassa HOM05D006245 ORTHO05D007260 1.2e-143 513.5 321 91.0
RcHm_v2.0_Chr7g0217321 Rosa chinensis HOM05D006245 ORTHO05D007260 1.8e-126 456.4 322 80.7
Prupe.5G003000 Prunus persica HOM05D006245 ORTHO05D007260 1.6e-74 283.9 324 61.1
MD06G1002100 Malus domestica HOM05D006245 ORTHO05D007260 1.7e-60 237.3 327 52.6
Haze_22875 Corylus avellana HOM05D006245 ORTHO05D007260 5.0e-57 225.7 315 53.0
Cfa014151 Carpinus fangiana HOM05D006245 ORTHO05D007260 3.6e-55 219.5 315 51.7
CiPaw.07G131600 Carya illinoinensis HOM05D006245 ORTHO05D007260 2.3e-54 216.9 307 47.6
Manes.18G001000 Manihot esculenta HOM05D006245 ORTHO05D007260 4.1e-51 206.1 317 44.8
Manes.18G005000 Manihot esculenta HOM05D006245 ORTHO05D007260 4.1e-51 206.1 317 45.4
CiPaw.08G078200 Carya illinoinensis HOM05D006245 ORTHO05D007260 2.0e-50 203.8 314 52.2
CANSAT11G2487 Cannabis sativa HOM05D006245 ORTHO05D007260 3.1e-46 189.9 308 44.5
QL02p016022 Quercus lobata HOM05D006245 ORTHO05D007260 3.1e-46 189.9 322 47.8
Cpa.g.sc438.4 Carica papaya HOM05D006245 ORTHO05D007260 4.0e-46 189.5 312 43.3
TWI56G0455 Tripterygium wilfordii HOM05D006245 ORTHO05D007260 5.2e-46 189.1 313 45.4
Dinv05508 Davidia involucrata HOM05D006245 ORTHO05D007260 2.0e-45 187.2 314 43.6
COL.COLO4_03408 Corchorus olitorius HOM05D006245 ORTHO05D007260 3.4e-45 186.4 315 52.7
Cpa.g.c24967.6 Carica papaya HOM05D006245 ORTHO05D007260 5.8e-45 185.7 309 44.0
Gohir.D05G292800 Gossypium hirsutum HOM05D006245 ORTHO05D007260 9.8e-45 184.9 299 44.8
Potri.005G257900 Populus trichocarpa HOM05D006245 ORTHO05D007260 1.7e-44 184.1 318 52.8
Gohir.A05G291700 Gossypium hirsutum HOM05D006245 ORTHO05D007260 2.2e-44 183.7 297 44.4
Gorai.009G309200 Gossypium raimondii HOM05D006245 ORTHO05D007260 4.9e-44 182.6 299 44.5
Ciclev10002005m.g Citrus clementina HOM05D006245 ORTHO05D007260 5.4e-43 179.1 274 44.9
Thecc.08G098200 Theobroma cacao HOM05D006245 ORTHO05D007260 1.2e-42 177.9 313 45.0
PGR083G2384 Punica granatum HOM05D006245 ORTHO05D007260 1.7e-41 174.1 321 44.2
Lalb_Chr19g0129191 Lupinus albus HOM05D006245 ORTHO05D007260 1.5e-40 171.0 305 43.0
Glyma.02G161100 Glycine max HOM05D006245 ORTHO05D007260 2.5e-40 170.2 309 40.8
Actinidia15551 Actinidia chinensis HOM05D006245 ORTHO05D007260 1.2e-39 167.9 314 41.4
CsaV3_4G037700 Cucumis sativus L. HOM05D006245 ORTHO05D007260 1.2e-39 167.9 311 39.5
Eucgr.F03612 Eucalyptus grandis HOM05D006245 ORTHO05D007260 1.6e-39 167.5 279 54.5
MELO3C017064.2 Cucumis melo HOM05D006245 ORTHO05D007260 2.1e-39 167.2 360 38.1
Phvul.007G247600 Phaseolus vulgaris HOM05D006245 ORTHO05D007260 2.8e-39 166.8 315 40.6
PGR031G1027 Punica granatum HOM05D006245 ORTHO05D007260 8.1e-39 165.2 258 50.4
TWI36G0521 Tripterygium wilfordii HOM05D006245 ORTHO05D007260 8.1e-39 165.2 316 51.3
Sc02g0009330 Simmondsia chinensis HOM05D006245 ORTHO05D007260 3.1e-38 163.3 333 42.3
Psat6g093400 Pisum sativum HOM05D006245 ORTHO05D007260 6.8e-38 162.2 300 41.3
Sed0007375 Sechium edule HOM05D006245 ORTHO05D007260 8.9e-38 161.8 352 39.8
ClCG11G019110 Citrullus lanatus HOM05D006245 ORTHO05D007260 1.2e-37 161.4 362 37.0
Lj5g0002209 Lotus japonicus HOM05D006245 ORTHO05D007260 1.2e-37 161.4 261 43.3
PGSC0003DMG400010008 Solanum tuberosum HOM05D006245 ORTHO05D007260 1.5e-37 161.0 245 43.3
Medtr1g050502 Medicago truncatula HOM05D006245 ORTHO05D007260 3.4e-37 159.8 307 40.1
Gohir.D04G005900 Gossypium hirsutum HOM05D006245 ORTHO05D007260 9.9e-37 158.3 241 47.3
Hund01813 Selenicereus undatus HOM05D006245 ORTHO05D007260 2.2e-36 157.1 344 40.1
Gorai.012G007100 Gossypium raimondii HOM05D006245 ORTHO05D007260 2.9e-36 156.8 241 46.9
TAR381G0633 Trochodendron aralioides HOM05D006245 ORTHO05D007260 2.9e-36 156.8 252 47.2
CAN.G1330.24 Capsicum annuum HOM05D006245 ORTHO05D007260 6.4e-36 155.6 245 43.3
Eucgr.F01824 Eucalyptus grandis HOM05D006245 ORTHO05D007260 8.3e-36 155.2 311 41.2
GSVIVG01013443001 Vitis vinifera HOM05D006245 ORTHO05D007260 5.4e-35 152.5 161 59.0
Sopen04g036530 Solanum pennellii HOM05D006245 ORTHO05D007260 7.1e-35 152.1 240 42.1
Solyc04g082890.3 Solanum lycopersicum HOM05D006245 ORTHO05D007260 2.1e-34 150.6 240 42.1
arahy.Tifrunner.gnm1.ann1.ZHJ1I0 Arachis hypogaea HOM05D006245 ORTHO05D007260 2.7e-34 150.2 267 40.8
EL10Ac1g01844 Beta vulgaris HOM05D006245 ORTHO05D007260 6.6e-33 145.6 324 36.4
vmacro21743 Vaccinium macrocarpon HOM05D006245 ORTHO05D007260 8.6e-33 145.2 333 35.4
Atru.chr13.34 Acer truncatum HOM05D006245 ORTHO05D007260 1.1e-32 144.8 248 46.8
arahy.Tifrunner.gnm1.ann1.9KRV5K Arachis hypogaea HOM05D006245 ORTHO05D007260 1.9e-32 144.1 267 41.2
Rhsim06G0001900 Rhododendron simsii HOM05D006245 ORTHO05D007260 3.3e-32 143.3 286 45.5
CARHR035240 Cardamine hirsuta HOM05D006245 ORTHO05D007260 7.3e-32 142.1 270 39.6
A08p07630 Brassica napus HOM05D006245 ORTHO05D007260 9.6e-32 141.7 260 41.2
BraA08t32777Z Brassica rapa HOM05D006245 ORTHO05D007260 9.6e-32 141.7 260 41.2
Cc10_g00180 Coffea canephora HOM05D006245 ORTHO05D007260 2.1e-31 140.6 165 52.7
Nn6g31596 Nelumbo nucifera HOM05D006245 ORTHO05D007260 4.7e-31 139.4 256 43.4
BcaC07g37450 Brassica carinata HOM05D006245 ORTHO05D007260 8.9e-30 135.2 316 36.4
C08p09220 Brassica napus HOM05D006245 ORTHO05D007260 8.9e-30 135.2 316 36.4
BolC8t47771H Brassica oleracea HOM05D006245 ORTHO05D007260 8.9e-30 135.2 316 36.4
Migut.N02994 Erythranthe guttata HOM05D006245 ORTHO05D007260 1.5e-29 134.4 332 40.1
Migut.O00838 Erythranthe guttata HOM05D006245 ORTHO05D007260 2.6e-29 133.7 323 37.5
Sp1g32200 Schrenkiella parvula HOM05D006245 ORTHO05D007260 2.6e-29 133.7 294 41.2
AT1G42990 Arabidopsis thaliana HOM05D006245 ORTHO05D007260 3.4e-29 133.3 322 39.8
BcaB04g17767 Brassica carinata HOM05D006245 ORTHO05D007260 5.8e-29 132.5 281 37.4
Thhalv10004635m.g Eutrema salsugineum HOM05D006245 ORTHO05D007260 2.9e-28 130.2 300 40.7
Aqoxy6G03039 Aquilegia oxysepala HOM05D006245 ORTHO05D007260 3.8e-28 129.8 166 54.2
DCAR_009857 Daucus carota HOM05D006245 ORTHO05D007260 3.8e-28 129.8 157 54.8
DCAR_017622 Daucus carota HOM05D006245 ORTHO05D007260 3.8e-28 129.8 168 50.0
Sabra05G0199800 Salix brachista HOM05D006245 ORTHO05D007260 1.4e-27 127.9 234 51.7
AL1G51480 Arabidopsis lyrata HOM05D006245 ORTHO05D007260 3.2e-27 126.7 290 34.1
Lsat_1_v5_gn_2_3181 Lactuca sativa HOM05D006245 ORTHO05D007260 3.2e-27 126.7 304 40.8
Duzib114G1035 Durio zibethinus HOM05D006245 ORTHO05D007260 7.1e-27 125.6 216 39.8
TPR.G10624 Trifolium pratense HOM05D006245 ORTHO05D007260 1.6e-26 124.4 184 51.6
MSTRG.24524 Avicennia marina HOM05D006245 ORTHO05D007260 2.1e-26 124.0 163 51.5
MBI04_g42540_MAGBIO Magnolia biondii HOM05D006245 ORTHO05D007260 2.1e-26 124.0 315 33.3
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 2.7e-26 123.6 170 51.2
Aa31LG6G10010 Aethionema arabicum HOM05D006245 ORTHO05D007260 3.5e-26 123.2 301 42.5
SalBow6G6430 Salvia bowleyana HOM05D006245 ORTHO05D007260 6.0e-26 122.5 309 36.2
MSTRG.22076 Avicennia marina HOM05D006245 ORTHO05D007260 1.3e-25 121.3 163 49.1
PSO541G3542 Papaver somniferum HOM05D006245 ORTHO05D007260 1.3e-25 121.3 155 49.0
SGA_v2.0_scaffold220G42616 Striga asiatica HOM05D006245 ORTHO05D007260 2.3e-25 120.6 321 35.8
PSO675G9277 Papaver somniferum HOM05D006245 ORTHO05D007260 3.0e-25 120.2 105 61.9
Eucgr.L02193 Eucalyptus grandis HOM05D006245 ORTHO05D007260 5.1e-25 119.4 214 45.3
Ah.11g042230 Amaranthus hybridus HOM05D006245 ORTHO05D007260 2.5e-24 117.1 118 61.0
CSS0018800 Camellia sinensis var. sinensis HOM05D006245 ORTHO05D007260 2.5e-24 117.1 229 49.8
VMungo0720G1847 Vigna mungo HOM05D006245 ORTHO05D007260 2.5e-24 117.1 227 39.2
Eucgr.G02751 Eucalyptus grandis HOM05D006245 ORTHO05D007260 7.3e-24 115.5 159 52.2
Duzib106G1614 Durio zibethinus HOM05D006245 ORTHO05D007260 1.6e-23 114.4 207 40.6
Carub.0001s3439 Capsella rubella HOM05D006245 ORTHO05D007260 2.8e-23 113.6 289 37.7
Ca_26636_v3 Cicer arietinum L. HOM05D006245 ORTHO05D007260 3.6e-23 113.2 178 45.5
AUR62035186 Chenopodium quinoa HOM05D006245 ORTHO05D007260 6.2e-23 112.5 85 70.6
Gohir.A05G409532 Gossypium hirsutum HOM05D006245 ORTHO05D007260 1.1e-22 111.7 137 54.7
HanXRQChr14g0427941 Helianthus annuus HOM05D006245 ORTHO05D007260 1.1e-22 111.7 163 48.5
Peaxi162Scf00385g00068 Petunia axillaris HOM05D006245 ORTHO05D007260 2.4e-22 110.5 172 42.4
ATR0605G375 Amborella trichopoda HOM05D006245 ORTHO05D007260 3.1e-22 110.2 169 47.9
THA.LOC104813184 Tarenaya hassleriana HOM05D006245 ORTHO05D007260 6.9e-22 109.0 320 40.3
HPP92_003836 Vanilla planifolia HOM05D006245 ORTHO05D007260 6.9e-22 109.0 329 33.1
Zm00001eb388050 Zea mays HOM05D006245 ORTHO05D007260 1.5e-21 107.8 165 44.2
Eucgr.F02193 Eucalyptus grandis HOM05D006245 ORTHO05D007260 2.0e-21 107.5 153 50.3
AUR62041341 Chenopodium quinoa HOM05D006245 ORTHO05D007260 2.6e-21 107.1 113 55.8
unitig_578.g16243 Utricularia gibba HOM05D006245 ORTHO05D007260 7.6e-21 105.5 258 37.6
unitig_8.g4814 Utricularia gibba HOM05D006245 ORTHO05D007260 7.6e-21 105.5 161 42.9
CDE05G2672 Ceratophyllum demersum HOM05D006245 ORTHO05D007260 8.4e-20 102.1 254 33.9
Oeu042496.1 Olea europaea HOM05D006245 ORTHO05D007260 4.2e-19 99.8 241 38.2
Os06g0622700 Oryza sativa ssp. japonica HOM05D006245 ORTHO05D007260 3.0e-17 93.6 80 63.8
Nitab4.5_0000464g0100 Nicotiana tabacum HOM05D006245 ORTHO05D007260 9.6e-16 88.6 319 29.5
Gorai.006G220700 Gossypium raimondii HOM05D006245 ORTHO05D007260 4.8e-15 86.3 60 68.3
Gorai.004G097700 Gossypium raimondii HOM05D006245 ORTHO05D007260 9.0e-14 82.0 189 34.4
Gohir.D08G092150 Gossypium hirsutum HOM05D006245 ORTHO05D007260 2.2e-12 77.4 50 72.0
AUR62043321 Chenopodium quinoa HOM05D006245 ORTHO05D007260 8.4e-12 75.5 60 66.7
Actinidia17088 Actinidia chinensis HOM05D001218 ORTHO05D004088 5.4e-11 72.8 59 71.2
ECA234G2998 Erigeron canadensis HOM05D006245 ORTHO05D007260 3.7e-07 60.1 123 41.5
AUR62033078 Chenopodium quinoa HOM05D000408 ORTHO05D001664 8.1e-07 58.9 50 66.0


User provided reference genes

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