Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g26310 Fragaria vesca HOM05D006436 ORTHO05D008011 1.4e-149 533.5 398 100.0
FAN18G0548 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.3e-94 350.9 186 95.2
FAN08G3413 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.9e-74 283.9 179 82.7
Manes.02G134600 Manihot esculenta HOM05D006436 ORTHO05D008011 3.9e-67 259.6 180 71.7
Cfa007759 Carpinus fangiana HOM05D006436 ORTHO05D008011 8.4e-62 241.9 179 67.6
BraA03t11880Z Brassica rapa HOM05D006436 ORTHO05D008011 1.1e-56 224.9 182 61.5
C03p31970 Brassica napus HOM05D006436 ORTHO05D008011 1.2e-55 221.5 182 60.4
BolC3t15539H Brassica oleracea HOM05D006436 ORTHO05D008011 1.5e-55 221.1 182 60.4
Cc00_g04020 Coffea canephora HOM05D006436 ORTHO05D008011 2.9e-54 216.9 185 61.6
Sc15g0000210 Simmondsia chinensis HOM05D006436 ORTHO05D008011 9.3e-53 211.8 179 59.8
FvH4_5g27560 Fragaria vesca HOM05D006436 ORTHO05D008011 1.2e-52 211.5 179 65.9
FAN18G1736 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.2e-52 211.5 179 65.9
SEGI_01802 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 2.7e-52 210.3 167 60.5
RcHm_v2.0_Chr7g0218931 Rosa chinensis HOM05D006436 ORTHO05D008011 4.6e-52 209.5 179 63.7
QL08p017466 Quercus lobata HOM05D006436 ORTHO05D008011 1.3e-51 208.0 179 60.9
Mapoly0028s0068 Marchantia polymorpha HOM05D006436 ORTHO05D008011 3.9e-51 206.5 180 57.8
Duzib168G0581 Durio zibethinus HOM05D006436 ORTHO05D008011 3.7e-49 199.9 117 82.1
MD09G1253300 Malus domestica HOM05D006436 ORTHO05D008011 1.8e-48 197.6 180 59.4
FAN13G2473 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.5e-47 194.5 175 63.4
PGSC0003DMG400023565 Solanum tuberosum HOM05D006436 ORTHO05D008011 1.5e-47 194.5 179 55.9
Hund24464 Selenicereus undatus HOM05D006436 ORTHO05D008011 2.6e-47 193.7 180 55.0
Eucgr.J01642 Eucalyptus grandis HOM05D006436 ORTHO05D008011 4.5e-47 193.0 179 55.3
SMO347G0032 Selaginella moellendorffii HOM05D006436 ORTHO05D008011 1.7e-46 191.0 178 53.9
ECA234G4304 Erigeron canadensis HOM05D006436 ORTHO05D008011 2.2e-46 190.7 179 54.7
Sabra16G0133900 Salix brachista HOM05D006436 ORTHO05D008011 2.9e-46 190.3 236 47.5
TWI77G0906 Tripterygium wilfordii HOM05D006436 ORTHO05D008011 3.8e-46 189.9 180 56.7
Psat2g043120 Pisum sativum HOM05D006436 ORTHO05D008011 5.0e-46 189.5 179 55.9
Ca_05765_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 1.1e-45 188.3 179 54.7
Ca_18506_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 1.1e-45 188.3 179 54.7
arahy.Tifrunner.gnm1.ann1.7TMM1B Arachis hypogaea HOM05D006436 ORTHO05D008011 2.5e-45 187.2 179 53.6
LjContig00141g0009494 Lotus japonicus HOM05D006436 ORTHO05D008011 5.5e-45 186.0 179 53.6
MBI18_g05914_MAGBIO Magnolia biondii HOM05D006436 ORTHO05D008011 9.3e-45 185.3 179 54.2
arahy.Tifrunner.gnm1.ann1.RB24L7 Arachis hypogaea HOM05D006436 ORTHO05D008011 1.2e-44 184.9 179 54.2
HanXRQChr10g0309911 Helianthus annuus HOM05D006436 ORTHO05D008011 1.6e-44 184.5 179 56.4
Ciclev10022503m.g Citrus clementina HOM05D006436 ORTHO05D008011 2.1e-44 184.1 179 55.3
CSS0031788 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 3.5e-44 183.3 179 55.3
Atru.chr1.2057 Acer truncatum HOM05D006436 ORTHO05D008011 4.6e-44 183.0 179 54.7
Phvul.008G233200 Phaseolus vulgaris HOM05D006436 ORTHO05D008011 6.1e-44 182.6 179 52.5
Thecc.09G311900 Theobroma cacao HOM05D006436 ORTHO05D008011 1.3e-43 181.4 179 53.1
arahy.Tifrunner.gnm1.ann1.QIUU4Q Arachis hypogaea HOM05D006436 ORTHO05D008011 1.8e-43 181.0 179 52.5
Prupe.3G143200 Prunus persica HOM05D006436 ORTHO05D008011 2.3e-43 180.6 180 56.7
Rhsim11G0087100 Rhododendron simsii HOM05D006436 ORTHO05D008011 2.3e-43 180.6 178 56.2
THA.LOC104823829 Tarenaya hassleriana HOM05D006436 ORTHO05D008011 2.3e-43 180.6 179 54.2
AT5G37290 Arabidopsis thaliana HOM05D006436 ORTHO05D008011 3.9e-43 179.9 181 52.5
CiPaw.03G076800 Carya illinoinensis HOM05D006436 ORTHO05D008011 6.7e-43 179.1 179 54.2
TAR365G0111 Trochodendron aralioides HOM05D006436 ORTHO05D008011 8.7e-43 178.7 179 53.6
Glyma.14G210900 Glycine max HOM05D006436 ORTHO05D008011 1.1e-42 178.3 179 50.8
VMungo0647G0400 Vigna mungo HOM05D006436 ORTHO05D008011 1.5e-42 177.9 179 51.4
arahy.Tifrunner.gnm1.ann1.1G92VG Arachis hypogaea HOM05D006436 ORTHO05D008011 2.5e-42 177.2 179 52.5
Sed0003659 Sechium edule HOM05D006436 ORTHO05D008011 2.5e-42 177.2 189 51.3
Peaxi162Scf00442g00063 Petunia axillaris HOM05D006436 ORTHO05D008011 4.3e-42 176.4 179 52.5
PGR042G2272 Punica granatum HOM05D006436 ORTHO05D008011 4.3e-42 176.4 179 53.6
Aqoxy7G01157 Aquilegia oxysepala HOM05D006436 ORTHO05D008011 5.7e-42 176.0 179 51.4
Medtr5g077040 Medicago truncatula HOM05D006436 ORTHO05D008011 5.7e-42 176.0 179 52.0
Gohir.D07G105500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 7.4e-42 175.6 179 51.4
Gorai.001G113600 Gossypium raimondii HOM05D006436 ORTHO05D008011 7.4e-42 175.6 179 51.4
Hma1.2p1_0158F.1_g069740 Hydrangea macrophylla HOM05D006436 ORTHO05D008011 7.4e-42 175.6 179 54.2
Lalb_Chr16g0392121 Lupinus albus HOM05D006436 ORTHO05D008011 7.4e-42 175.6 179 51.4
Nitab4.5_0005193g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 9.7e-42 175.3 179 52.0
Potri.001G225300 Populus trichocarpa HOM05D006436 ORTHO05D008011 1.3e-41 174.9 179 52.5
Cpa.g.sc178.16 Carica papaya HOM05D006436 ORTHO05D008011 1.6e-41 174.5 179 52.0
Lj4C253G7 Lonicera japonica HOM05D006436 ORTHO05D008011 3.7e-41 173.3 179 53.1
Cc07_g12850 Coffea canephora HOM05D006436 ORTHO05D008011 6.3e-41 172.6 179 52.0
Gohir.A07G101500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 8.2e-41 172.2 179 50.8
Solyc04g014610.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 1.1e-40 171.8 179 50.8
Sopen04g006750 Solanum pennellii HOM05D006436 ORTHO05D008011 1.1e-40 171.8 179 50.8
PGSC0003DMG400024110 Solanum tuberosum HOM05D006436 ORTHO05D008011 1.1e-40 171.8 179 50.8
Haze_14313 Corylus avellana HOM05D006436 ORTHO05D008011 4.1e-40 169.9 124 67.7
Sopen04g027290 Solanum pennellii HOM05D006436 ORTHO05D008011 4.1e-40 169.9 179 50.3
MELO3C025074.2 Cucumis melo HOM05D006436 ORTHO05D008011 9.0e-40 168.7 190 48.4
CAN.G268.8 Capsicum annuum HOM05D006436 ORTHO05D008011 1.2e-39 168.3 179 50.3
Carub.0007s3240 Capsella rubella HOM05D006436 ORTHO05D008011 1.5e-39 167.9 181 49.7
Solyc04g071330.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 1.5e-39 167.9 179 49.7
Carub.0007s3243 Capsella rubella HOM05D006436 ORTHO05D008011 2.0e-39 167.5 181 49.7
CsaV3_5G020600 Cucumis sativus L. HOM05D006436 ORTHO05D008011 2.6e-39 167.2 190 47.9
Oeu012529.1 Olea europaea HOM05D006436 ORTHO05D008011 2.6e-39 167.2 179 50.8
GSVIVG01035239001 Vitis vinifera HOM05D006436 ORTHO05D008011 2.6e-39 167.2 179 50.8
HPP92_004857 Vanilla planifolia HOM05D006436 ORTHO05D008011 3.4e-39 166.8 171 53.2
Thhalv10027956m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 4.5e-39 166.4 181 50.8
COL.COLO4_18608 Corchorus olitorius HOM05D006436 ORTHO05D008011 7.7e-39 165.6 171 52.0
vmacro01486 Vaccinium macrocarpon HOM05D006436 ORTHO05D008011 1.0e-38 165.2 179 50.8
Lsat_1_v5_gn_5_79100 Lactuca sativa HOM05D006436 ORTHO05D008011 1.7e-38 164.5 178 50.6
AagrBONN_evm.TU.Sc2ySwM_368.3316 Anthoceros agrestis HOM05D006436 ORTHO05D008011 8.5e-38 162.2 154 52.6
Dinv19074 Davidia involucrata HOM05D006436 ORTHO05D008011 1.4e-37 161.4 179 49.7
Sp1g30670 Schrenkiella parvula HOM05D006436 ORTHO05D008011 1.4e-37 161.4 181 49.7
CARHR215800 Cardamine hirsuta HOM05D006436 ORTHO05D008011 1.9e-37 161.0 181 48.6
Os11g0546200 Oryza sativa ssp. japonica HOM05D006436 ORTHO05D008011 4.2e-37 159.8 178 48.3
AL7G45650 Arabidopsis lyrata HOM05D006436 ORTHO05D008011 5.5e-37 159.5 181 49.2
CANSAT80G1957 Cannabis sativa HOM05D006436 ORTHO05D008011 7.2e-37 159.1 179 48.6
ATR0706G244 Amborella trichopoda HOM05D006436 ORTHO05D008011 9.4e-37 158.7 179 49.2
Oeu039710.1 Olea europaea HOM05D006436 ORTHO05D008011 9.4e-37 158.7 179 49.2
BcaB03g13643 Brassica carinata HOM05D006436 ORTHO05D008011 4.6e-36 156.4 181 47.5
SGA_v2.0_scaffold24G10269 Striga asiatica HOM05D006436 ORTHO05D008011 4.6e-36 156.4 211 42.2
Nn4g25693 Nelumbo nucifera HOM05D006436 ORTHO05D008011 6.1e-36 156.0 123 61.8
unitig_61.g26181 Utricularia gibba HOM05D006436 ORTHO05D008011 7.9e-36 155.6 180 47.2
BcaC01g04932 Brassica carinata HOM05D006436 ORTHO05D008011 2.3e-35 154.1 181 47.0
Dinv28234 Davidia involucrata HOM05D006436 ORTHO05D008011 3.9e-35 153.3 161 51.6
Zm00001eb188680 Zea mays HOM05D006436 ORTHO05D008011 5.1e-35 152.9 179 47.5
CDE11G1230 Ceratophyllum demersum HOM05D006436 ORTHO05D008011 1.1e-32 145.2 143 50.3
PSO063G3804 Papaver somniferum HOM05D006436 ORTHO05D008011 1.4e-32 144.8 179 44.1
EL10Ac5g11211 Beta vulgaris HOM05D006436 ORTHO05D008011 1.8e-32 144.4 89 77.5
MSTRG.12143 Avicennia marina HOM05D006436 ORTHO05D008011 5.3e-32 142.9 179 44.7
Ah.14g085550 Amaranthus hybridus HOM05D000477 ORTHO05D000338 3.4e-31 140.2 90 74.4
Nitab4.5_0000574g0240 Nicotiana tabacum HOM05D006436 ORTHO05D008011 3.4e-31 140.2 84 76.2
Thhalv10028339m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 1.3e-30 138.3 133 51.9
Migut.A01047 Erythranthe guttata HOM05D006436 ORTHO05D008011 2.2e-30 137.5 179 43.0
AUR62026125 Chenopodium quinoa HOM05D003339 ORTHO05D003847 3.8e-30 136.7 89 74.2
AUR62026126 Chenopodium quinoa HOM05D006436 ORTHO05D008011 1.4e-29 134.8 89 73.0
AUR62028451 Chenopodium quinoa HOM05D003339 ORTHO05D003847 1.9e-29 134.4 88 73.9
CSS0025543 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 3.2e-29 133.7 184 42.9
AUR62028452 Chenopodium quinoa HOM05D006436 ORTHO05D008011 2.1e-28 131.0 89 73.0
Aa31LG5G11620 Aethionema arabicum HOM05D006436 ORTHO05D008011 6.1e-28 129.4 197 41.6
CSS0035006 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 6.1e-28 129.4 128 51.6
DCAR_006063 Daucus carota HOM05D006436 ORTHO05D008011 6.1e-28 129.4 142 48.6
ClCG01G008580 Citrullus lanatus HOM05D006436 ORTHO05D008011 5.1e-27 126.3 148 46.6
arahy.Tifrunner.gnm1.ann1.8KE236 Arachis hypogaea HOM05D006436 ORTHO05D008011 2.6e-26 124.0 218 37.2
Thecc.05G304200 Theobroma cacao HOM05D006436 ORTHO05D008011 6.3e-25 119.4 101 57.4
Nitab4.5_0012165g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 8.2e-25 119.0 143 46.2
SalBow6G7138 Salvia bowleyana HOM05D006436 ORTHO05D008011 3.1e-24 117.1 74 73.0
CBR_g12236 Chara braunii HOM05D006436 ORTHO05D008011 4.5e-23 113.2 119 47.9
CsaV3_1G031100 Cucumis sativus L. HOM05D006436 ORTHO05D008011 6.1e-20 102.8 99 52.5
FAN06G1954 Fragaria x ananassa HOM05D004096 ORTHO05D000898 2.0e-15 87.8 79 64.6
FAN12G1875 Fragaria x ananassa HOM05D004096 ORTHO05D000898 3.5e-15 87.0 97 55.7
Haze_10727 Corylus avellana HOM05D006436 ORTHO05D008011 5.7e-10 69.7 52 65.4
RcHm_v2.0_Chr4g0394581 Rosa chinensis HOM05D004344 ORTHO05D006026 5.4e-08 63.2 45 64.4
CAN.G935.5 Capsicum annuum HOM05D006436 ORTHO05D008011 7.7e-07 59.3 36 75.0
QL03p022571 Quercus lobata HOM05D006436 ORTHO05D008011 7.7e-07 59.3 36 75.0
Nitab4.5_0011078g0020 Nicotiana tabacum HOM05D006436 ORTHO05D008011 3.8e-06 57.0 36 72.2


User provided reference genes

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