Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g25620 Fragaria vesca HOM05D006640 ORTHO05D008078 3.8e-103 378.3 200 100.0
FAN18G3620 Fragaria x ananassa HOM05D006640 ORTHO05D008078 5.5e-102 374.4 200 99.0
FAN04G1358 Fragaria x ananassa HOM05D006640 ORTHO05D008078 1.6e-101 372.9 200 98.5
FAN08G2005 Fragaria x ananassa HOM05D006640 ORTHO05D008078 1.2e-93 346.7 185 98.9
RcHm_v2.0_Chr7g0215911 Rosa chinensis HOM05D006640 ORTHO05D008078 7.9e-93 344.0 200 91.0
FAN13G1910 Fragaria x ananassa HOM05D006640 ORTHO05D008078 8.5e-87 323.9 232 78.9
MD15G1440200 Malus domestica HOM05D006640 ORTHO05D008078 3.7e-82 308.5 201 81.1
Prupe.5G009200 Prunus persica HOM05D006640 ORTHO05D008078 6.9e-81 304.3 201 81.1
Atru.chr3.582 Acer truncatum HOM05D006640 ORTHO05D008078 7.7e-72 274.2 200 71.5
GSVIVG01013394001 Vitis vinifera HOM05D006640 ORTHO05D008078 7.7e-72 274.2 200 72.5
CiPaw.07G136100 Carya illinoinensis HOM05D006640 ORTHO05D008078 1.4e-70 270.0 200 72.5
QL02p015123 Quercus lobata HOM05D006640 ORTHO05D008078 2.5e-70 269.2 199 72.4
CSS0000785 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 2.7e-69 265.8 200 68.5
Haze_19181 Corylus avellana HOM05D006640 ORTHO05D008078 1.0e-68 263.8 200 69.5
Ciclev10002549m.g Citrus clementina HOM05D006640 ORTHO05D008078 3.9e-68 261.9 200 67.0
Eucgr.F01788 Eucalyptus grandis HOM05D006640 ORTHO05D008078 3.9e-68 261.9 200 67.5
CAN.G1138.9 Capsicum annuum HOM05D006640 ORTHO05D008078 5.2e-68 261.5 201 69.7
Potri.005G253200 Populus trichocarpa HOM05D006640 ORTHO05D008078 6.7e-68 261.2 202 67.8
Manes.13G069100 Manihot esculenta HOM05D006640 ORTHO05D008078 7.4e-67 257.7 200 68.0
Lj6g0027905 Lotus japonicus HOM05D006640 ORTHO05D008078 1.4e-65 253.4 198 65.7
Solyc04g082560.4 Solanum lycopersicum HOM05D001842 ORTHO05D001849 4.1e-65 251.9 201 68.2
Solyc08g069130.1 Solanum lycopersicum HOM05D006640 ORTHO05D008078 4.1e-65 251.9 201 68.2
TAR625G0363 Trochodendron aralioides HOM05D006640 ORTHO05D008078 4.1e-65 251.9 200 65.5
EL10Ac3g05131 Beta vulgaris HOM05D006640 ORTHO05D008078 9.1e-65 250.8 200 64.0
Sopen04g036190 Solanum pennellii HOM05D006640 ORTHO05D008078 1.2e-64 250.4 201 67.2
Thecc.03G029100 Theobroma cacao HOM05D006640 ORTHO05D008078 1.2e-64 250.4 200 65.0
Cc10_g14910 Coffea canephora HOM05D006640 ORTHO05D008078 2.9e-63 245.7 199 66.8
Lalb_Chr01g0007731 Lupinus albus HOM05D006640 ORTHO05D008078 2.9e-63 245.7 198 63.1
Hund21079 Selenicereus undatus HOM05D006640 ORTHO05D008078 5.0e-63 245.0 200 65.5
Migut.E01492 Erythranthe guttata HOM05D006640 ORTHO05D008078 8.5e-63 244.2 199 65.3
Cfa010319 Carpinus fangiana HOM05D006640 ORTHO05D008078 4.2e-62 241.9 185 69.2
Oeu011315.3 Olea europaea HOM05D006640 ORTHO05D008078 4.2e-62 241.9 208 63.5
MD08G1245100 Malus domestica HOM05D006640 ORTHO05D008078 7.2e-62 241.1 164 79.9
Cfa020797 Carpinus fangiana HOM05D006640 ORTHO05D008078 4.7e-61 238.4 185 69.2
Gorai.006G062900 Gossypium raimondii HOM05D006640 ORTHO05D008078 8.0e-61 237.7 206 60.2
Peaxi162Scf00680g00119 Petunia axillaris HOM05D006640 ORTHO05D008078 3.0e-60 235.7 201 63.2
Glyma.08G337400 Glycine max HOM05D001876 ORTHO05D002002 8.8e-60 234.2 198 60.6
vmacro05542 Vaccinium macrocarpon HOM05D006640 ORTHO05D008078 8.8e-60 234.2 192 64.1
MSTRG.990 Avicennia marina HOM05D006640 ORTHO05D008078 4.4e-59 231.9 199 62.8
Gohir.A09G046800 Gossypium hirsutum HOM05D006640 ORTHO05D008078 5.7e-59 231.5 206 58.7
Medtr1g103240 Medicago truncatula HOM05D006640 ORTHO05D008078 7.5e-59 231.1 200 61.5
CANSAT54G1336 Cannabis sativa HOM05D006640 ORTHO05D008078 2.2e-58 229.6 197 62.9
Ca_19713_v3 Cicer arietinum L. HOM05D006640 ORTHO05D008078 2.8e-58 229.2 239 54.8
SalBow1G3286 Salvia bowleyana HOM05D006640 ORTHO05D008078 3.7e-58 228.8 199 59.8
PGR083G0938 Punica granatum HOM05D006640 ORTHO05D008078 6.3e-58 228.0 200 61.0
Psat7g226480 Pisum sativum HOM05D006640 ORTHO05D008078 8.2e-58 227.6 201 61.2
SalBow7G4342 Salvia bowleyana HOM05D006640 ORTHO05D008078 1.1e-57 227.3 199 59.8
TPR.G34155 Trifolium pratense HOM05D006640 ORTHO05D008078 2.4e-57 226.1 201 61.2
HanXRQChr05g0147651 Helianthus annuus HOM05D006640 ORTHO05D008078 4.1e-57 225.3 200 57.5
Glyma.08G337600 Glycine max HOM05D003402 ORTHO05D003939 7.0e-57 224.6 185 62.7
Medtr4g032370 Medicago truncatula HOM05D006640 ORTHO05D008078 9.1e-57 224.2 199 61.3
COL.COLO4_22727 Corchorus olitorius HOM05D006640 ORTHO05D008078 1.6e-56 223.4 186 61.8
CSS0028139 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 5.9e-56 221.5 200 60.0
SGA_v2.0_scaffold184G39969 Striga asiatica HOM05D006640 ORTHO05D008078 5.9e-56 221.5 201 59.7
COL.COLO4_07395 Corchorus olitorius HOM05D006640 ORTHO05D008078 3.8e-55 218.8 202 59.4
ClCG02G003390 Citrullus lanatus HOM05D006640 ORTHO05D008078 8.5e-55 217.6 200 60.5
Duzib205G0266 Durio zibethinus HOM05D006640 ORTHO05D008078 8.5e-55 217.6 188 59.0
Dinv27390 Davidia involucrata HOM05D006640 ORTHO05D008078 1.1e-54 217.2 170 70.0
MELO3C013247.2 Cucumis melo HOM05D006640 ORTHO05D008078 1.5e-54 216.9 200 61.0
CsaV3_7G001930 Cucumis sativus L. HOM05D006640 ORTHO05D008078 2.5e-54 216.1 200 61.0
HanXRQChr02g0057271 Helianthus annuus HOM05D006640 ORTHO05D008078 2.5e-54 216.1 200 56.0
DCAR_013930 Daucus carota HOM05D006640 ORTHO05D008078 5.5e-54 214.9 207 57.0
ECA232G3411 Erigeron canadensis HOM05D006640 ORTHO05D008078 5.5e-54 214.9 200 57.5
SalBow6G0872 Salvia bowleyana HOM05D006640 ORTHO05D008078 1.6e-53 213.4 191 61.3
Aa31LG9G12490 Aethionema arabicum HOM05D006640 ORTHO05D008078 3.6e-53 212.2 197 57.4
Aqoxy6G01598 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 8.0e-53 211.1 197 56.3
CSS0036253 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 1.4e-52 210.3 207 56.5
CDE02G0900 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 1.4e-52 210.3 198 53.0
Rhsim08G0078300 Rhododendron simsii HOM05D006640 ORTHO05D008078 1.5e-51 206.8 185 60.0
THA.LOC104820569 Tarenaya hassleriana HOM05D006640 ORTHO05D008078 1.5e-51 206.8 198 57.1
Thhalv10003275m.g Eutrema salsugineum HOM05D006640 ORTHO05D008078 2.6e-51 206.1 198 56.1
Cpa.g.sc26.165 Carica papaya HOM05D006640 ORTHO05D008078 5.7e-51 204.9 185 60.0
Hma1.2p1_0612F.1_g188900 Hydrangea macrophylla HOM05D006640 ORTHO05D008078 1.3e-50 203.8 156 66.7
Carub.0008s0481 Capsella rubella HOM05D006640 ORTHO05D008078 4.8e-50 201.8 198 55.6
MBI06_g19633_MAGBIO Magnolia biondii HOM05D006640 ORTHO05D008078 4.8e-50 201.8 182 60.4
CARHR179670 Cardamine hirsuta HOM05D006640 ORTHO05D008078 8.3e-50 201.1 198 56.1
Phvul.008G111000 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 1.1e-49 200.7 185 57.3
ATR0807G089 Amborella trichopoda HOM05D006640 ORTHO05D008078 5.4e-49 198.4 198 52.5
AUR62005948 Chenopodium quinoa HOM05D006640 ORTHO05D008078 9.1e-49 197.6 185 56.2
AL8G16350 Arabidopsis lyrata HOM05D006640 ORTHO05D008078 2.0e-48 196.4 198 52.5
AT5G43822 Arabidopsis thaliana HOM05D006640 ORTHO05D008078 3.5e-48 195.7 198 53.0
PSO541G3394 Papaver somniferum HOM05D006640 ORTHO05D008078 1.0e-47 194.1 200 52.5
Os10g0566900 Oryza sativa ssp. japonica HOM05D006640 ORTHO05D008078 2.3e-47 193.0 200 53.0
PSO675G3428 Papaver somniferum HOM05D006640 ORTHO05D008078 2.9e-47 192.6 200 52.0
BcaC06g34624 Brassica carinata HOM05D006640 ORTHO05D008078 4.2e-46 188.7 198 51.5
BcaC06g31675 Brassica carinata HOM05D006640 ORTHO05D008078 1.6e-45 186.8 198 51.0
BraA06t27635Z Brassica rapa HOM05D006640 ORTHO05D008078 4.7e-45 185.3 198 50.5
Lsat_1_v5_gn_9_28760 Lactuca sativa HOM05D006640 ORTHO05D008078 3.0e-44 182.6 185 51.4
Nn5g31001 Nelumbo nucifera HOM05D006640 ORTHO05D008078 6.8e-44 181.4 147 65.3
Lsat_1_v5_gn_0_27580 Lactuca sativa HOM05D006640 ORTHO05D008078 3.4e-43 179.1 200 48.5
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 5.7e-43 178.3 249 43.8
Sabra05G0196400 Salix brachista HOM05D006640 ORTHO05D008078 1.3e-42 177.2 187 53.5
Phvul.006G070300 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 1.2e-40 170.6 137 62.0
AUR62028117 Chenopodium quinoa HOM05D006640 ORTHO05D008078 2.3e-39 166.4 177 52.0
Sp2g08620 Schrenkiella parvula HOM05D006218 ORTHO05D007338 5.0e-39 165.2 195 46.2
unitig_46.g18025 Utricularia gibba HOM05D006640 ORTHO05D008078 1.1e-38 164.1 205 45.9
VMungo0540G0999 Vigna mungo HOM05D006640 ORTHO05D008078 1.9e-38 163.3 146 58.9
HPP92_007449 Vanilla planifolia HOM05D006640 ORTHO05D008078 3.0e-36 156.0 186 46.8
SHI14582 Sapria himalayana HOM05D006640 ORTHO05D008078 1.2e-35 154.1 163 53.4
Sc24g0000300 Simmondsia chinensis HOM05D006640 ORTHO05D008078 1.2e-35 154.1 115 66.1
Mapoly0033s0101 Marchantia polymorpha HOM05D006640 ORTHO05D008078 7.5e-35 151.4 193 44.6
Sed0007887 Sechium edule HOM05D006640 ORTHO05D008078 1.3e-34 150.6 145 58.6
Nitab4.5_0001208g0130 Nicotiana tabacum HOM05D006640 ORTHO05D008078 3.7e-34 149.1 131 63.4
RcHm_v2.0_Chr3g0481381 Rosa chinensis HOM05D006640 ORTHO05D008078 2.4e-33 146.4 108 71.3
Aqoxy2G03352 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 4.3e-30 135.6 158 49.4
Pp3c20_21140 Physcomitrium patens HOM05D000227 ORTHO05D008078 1.6e-29 133.7 185 42.7
Zm00001eb327920 Zea mays HOM05D006640 ORTHO05D008078 2.8e-29 132.9 157 45.2
CSS0011114 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 3.1e-28 129.4 152 48.7
Lj4C809G7 Lonicera japonica HOM05D006640 ORTHO05D008078 4.0e-28 129.0 146 49.3
Nitab4.5_0000383g0410 Nicotiana tabacum HOM05D006640 ORTHO05D008078 6.8e-28 128.3 110 63.6
Gohir.D09G047201 Gossypium hirsutum HOM05D006640 ORTHO05D008078 4.4e-27 125.6 109 57.8
Nitab4.5_0010095g0020 Nicotiana tabacum HOM05D006640 ORTHO05D008078 1.4e-25 120.6 87 67.8
RcHm_v2.0_Chr3g0481391 Rosa chinensis HOM05D006640 ORTHO05D008078 4.6e-24 115.5 85 74.1
Duzib205G1379 Durio zibethinus HOM05D006640 ORTHO05D008078 6.0e-24 115.2 129 48.8
Cfa015562 Carpinus fangiana HOM05D006640 ORTHO05D008078 1.7e-23 113.6 185 36.8
AagrBONN_evm.TU.Sc2ySwM_362.2824 Anthoceros agrestis HOM05D006640 ORTHO05D008078 5.6e-22 108.6 155 41.9
Peaxi162Scf00139g00094 Petunia axillaris HOM05D006640 ORTHO05D008078 1.2e-21 107.5 165 39.4
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 3.1e-20 102.8 85 64.7
Atru.chr3.42 Acer truncatum HOM05D006640 ORTHO05D008078 2.0e-19 100.1 61 75.4
CBR_g30123 Chara braunii HOM05D006640 ORTHO05D008078 3.5e-16 89.4 191 30.9
CDE04G0756 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 7.3e-14 81.6 110 38.2
FvH4_6g22960 Fragaria vesca HOM05D006640 ORTHO05D008078 4.0e-12 75.9 55 67.3
MD08G1245200 Malus domestica HOM05D006640 ORTHO05D008078 2.6e-11 73.2 38 89.5
Aqoxy2G03351 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 3.4e-11 72.8 57 66.7
vmacro03672 Vaccinium macrocarpon HOM05D002991 ORTHO05D003480 3.0e-07 59.7 71 45.1
Phvul.006G060400 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 5.6e-06 55.5 45 57.8


User provided reference genes

Program Settings