Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g25440 Fragaria vesca HOM05D006770 ORTHO05D008356 3.4e-272 941.0 472 100.0
FAN18G3713 Fragaria x ananassa HOM05D006770 ORTHO05D008356 3.8e-271 937.6 472 99.4
FAN13G3072 Fragaria x ananassa HOM05D006770 ORTHO05D008356 2.9e-263 911.4 471 96.0
FAN08G2065 Fragaria x ananassa HOM05D006770 ORTHO05D008356 1.9e-262 908.7 471 95.8
RcHm_v2.0_Chr5g0066911 Rosa chinensis HOM05D006770 ORTHO05D008356 4.7e-245 850.9 472 91.3
Prupe.5G010100 Prunus persica HOM05D006770 ORTHO05D008356 2.4e-196 689.1 476 73.3
MD00G1136800 Malus domestica HOM05D006770 ORTHO05D008356 9.0e-196 687.2 475 73.3
Haze_22817 Corylus avellana HOM05D006770 ORTHO05D008356 2.9e-186 655.6 482 66.8
QL02p014697 Quercus lobata HOM05D006770 ORTHO05D008356 3.5e-184 648.7 490 66.9
CiPaw.07G136700 Carya illinoinensis HOM05D006770 ORTHO05D008356 1.6e-181 639.8 480 66.2
Duzib041G0267 Durio zibethinus HOM05D006770 ORTHO05D008356 1.0e-178 630.6 461 67.0
Potri.005G252300 Populus trichocarpa HOM05D006770 ORTHO05D008356 3.8e-178 628.6 452 67.9
Atru.chr13.120 Acer truncatum HOM05D006770 ORTHO05D008356 9.7e-174 614.0 473 66.0
Sabra05G0195800 Salix brachista HOM05D006770 ORTHO05D008356 1.6e-173 613.2 453 66.4
Thecc.08G061300 Theobroma cacao HOM05D006770 ORTHO05D008356 1.8e-172 609.8 460 66.5
Cfa014101 Carpinus fangiana HOM05D006770 ORTHO05D008356 6.9e-172 607.8 389 73.8
Ciclev10000935m.g Citrus clementina HOM05D006770 ORTHO05D008356 3.4e-171 605.5 447 67.8
CSS0047097 Camellia sinensis var. sinensis HOM05D006770 ORTHO05D008356 7.6e-171 604.4 459 66.2
Manes.17G081600 Manihot esculenta HOM05D006770 ORTHO05D008356 7.2e-169 597.8 456 66.2
COL.COLO4_36416 Corchorus olitorius HOM05D006770 ORTHO05D008356 1.2e-168 597.0 475 63.4
CANSAT64G1545 Cannabis sativa HOM05D006770 ORTHO05D008356 1.0e-167 594.0 467 63.2
TAR625G0814 Trochodendron aralioides HOM05D006770 ORTHO05D008356 6.7e-167 591.3 459 63.8
Gohir.A11G329900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 8.2e-165 584.3 453 63.8
Lalb_Chr05g0219451 Lupinus albus HOM05D006770 ORTHO05D008356 8.2e-165 584.3 468 61.5
Glyma.07G217000 Glycine max HOM05D006770 ORTHO05D008356 1.4e-164 583.6 462 62.1
Gorai.006G274800 Gossypium raimondii HOM05D006770 ORTHO05D008356 1.4e-164 583.6 453 63.4
TWI79G0343 Tripterygium wilfordii HOM05D006770 ORTHO05D008356 6.9e-164 581.3 467 62.7
Gorai.004G294200 Gossypium raimondii HOM05D006770 ORTHO05D008356 1.5e-163 580.1 453 62.9
PSO541G3292 Papaver somniferum HOM05D006770 ORTHO05D008356 3.4e-163 578.9 450 63.1
Medtr4g084940 Medicago truncatula HOM05D006770 ORTHO05D008356 1.1e-161 573.9 459 61.2
Nn5g30983 Nelumbo nucifera HOM05D006770 ORTHO05D008356 1.4e-161 573.5 456 63.6
Glyma.20G013900 Glycine max HOM05D006770 ORTHO05D008356 1.9e-161 573.2 464 61.2
Oeu032124.1 Olea europaea HOM05D006770 ORTHO05D008356 1.9e-161 573.2 454 62.6
PSO675G2016 Papaver somniferum HOM05D006770 ORTHO05D008356 3.2e-161 572.4 447 62.6
Ca_25485_v3 Cicer arietinum L. HOM05D006770 ORTHO05D008356 4.2e-161 572.0 465 61.3
Manes.05G095800 Manihot esculenta HOM05D006770 ORTHO05D008356 5.5e-161 571.6 461 62.7
CsaV3_1G014370 Cucumis sativus L. HOM05D006770 ORTHO05D008356 9.4e-161 570.9 455 61.3
VMungo0251G0866 Vigna mungo HOM05D006770 ORTHO05D008356 9.4e-161 570.9 454 62.3
Phvul.001G002700 Phaseolus vulgaris HOM05D006770 ORTHO05D008356 1.6e-160 570.1 433 64.0
Aqoxy6G01625 Aquilegia oxysepala HOM05D006770 ORTHO05D008356 2.7e-160 569.3 452 62.6
THA.LOC104813750 Tarenaya hassleriana HOM05D006770 ORTHO05D008356 4.7e-160 568.5 469 60.8
TPR.G35412 Trifolium pratense HOM05D006770 ORTHO05D008356 6.7e-159 564.7 466 59.7
Lj4g0024175 Lotus japonicus HOM05D006770 ORTHO05D008356 1.7e-157 560.1 442 63.1
Gohir.D08G007000 Gossypium hirsutum HOM05D006770 ORTHO05D008356 2.2e-157 559.7 434 63.8
MELO3C004826.2 Cucumis melo HOM05D006770 ORTHO05D008356 4.8e-157 558.5 456 61.2
Gohir.A01G231900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.1e-156 557.4 446 62.6
Nitab4.5_0001583g0140 Nicotiana tabacum HOM05D006770 ORTHO05D008356 1.1e-156 557.4 469 61.4
AUR62035131 Chenopodium quinoa HOM05D006770 ORTHO05D008356 5.3e-156 555.1 447 62.0
Nitab4.5_0001225g0180 Nicotiana tabacum HOM05D006770 ORTHO05D008356 6.9e-156 554.7 468 61.3
AUR62040821 Chenopodium quinoa HOM05D006770 ORTHO05D008356 1.2e-155 553.9 461 61.2
Gohir.D08G275542 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.2e-155 553.9 408 65.4
PGSC0003DMG400021117 Solanum tuberosum HOM05D006770 ORTHO05D008356 1.5e-155 553.5 466 60.1
Gohir.A13G000201 Gossypium hirsutum HOM05D006770 ORTHO05D008356 2.0e-155 553.1 408 65.2
Sopen02g019170 Solanum pennellii HOM05D006770 ORTHO05D008356 1.3e-154 550.4 465 60.0
Aa31LG2G8050 Aethionema arabicum HOM05D006770 ORTHO05D008356 8.5e-154 547.7 472 58.9
Sc02g0009170 Simmondsia chinensis HOM05D006770 ORTHO05D008356 1.2e-152 543.9 479 58.5
Solyc02g070010.1 Solanum lycopersicum HOM05D006770 ORTHO05D008356 1.6e-152 543.5 451 60.5
Rhsim13G0054100 Rhododendron simsii HOM05D006770 ORTHO05D008356 3.6e-152 542.3 462 61.7
Gorai.009G456100 Gossypium raimondii HOM05D006770 ORTHO05D008356 4.7e-152 542.0 453 59.8
EL10Ac1g01921 Beta vulgaris HOM05D006770 ORTHO05D008356 6.1e-152 541.6 462 58.9
Cc09_g04530 Coffea canephora HOM05D006770 ORTHO05D008356 5.2e-151 538.5 463 59.4
Hund01783 Selenicereus undatus HOM05D006770 ORTHO05D008356 5.2e-151 538.5 457 60.2
ECA246G3919 Erigeron canadensis HOM05D006770 ORTHO05D008356 4.4e-150 535.4 484 58.1
CDE04G3028 Ceratophyllum demersum HOM05D006770 ORTHO05D008356 5.7e-150 535.0 473 57.5
Psat7g128200 Pisum sativum HOM05D006770 ORTHO05D008356 7.4e-150 534.6 465 58.3
CAN.G79.22 Capsicum annuum HOM05D006770 ORTHO05D008356 3.7e-149 532.3 443 60.5
CAN.G79.18 Capsicum annuum HOM05D006770 ORTHO05D008356 4.8e-149 531.9 460 59.6
Sc02g0009150 Simmondsia chinensis HOM05D006770 ORTHO05D008356 1.1e-148 530.8 497 55.9
Thhalv10004104m.g Eutrema salsugineum HOM05D006770 ORTHO05D008356 1.8e-148 530.0 441 62.1
HanXRQChr06g0167391 Helianthus annuus HOM05D006770 ORTHO05D008356 2.6e-147 526.2 484 57.4
AL5G10970 Arabidopsis lyrata HOM05D006770 ORTHO05D008356 4.5e-147 525.4 444 61.5
PGR031G0937 Punica granatum HOM05D006770 ORTHO05D008356 3.8e-146 522.3 416 63.2
Atru.chr13.118 Acer truncatum HOM05D006770 ORTHO05D008356 1.5e-145 520.4 454 59.9
Dinv31957 Davidia involucrata HOM05D006770 ORTHO05D008356 1.5e-145 520.4 348 71.6
BcaC06g31269 Brassica carinata HOM05D006770 ORTHO05D008356 3.2e-145 519.2 445 61.1
AT2G01860 Arabidopsis thaliana HOM05D006770 ORTHO05D008356 7.2e-145 518.1 444 60.6
SalBow7G3490 Salvia bowleyana HOM05D006770 ORTHO05D008356 4.7e-144 515.4 431 60.3
CARHR144420 Cardamine hirsuta HOM05D006770 ORTHO05D008356 4.0e-143 512.3 444 59.9
Lsat_1_v5_gn_3_16821 Lactuca sativa HOM05D006770 ORTHO05D008356 4.0e-143 512.3 413 60.8
Carub.0005s0082 Capsella rubella HOM05D006770 ORTHO05D008356 2.6e-142 509.6 443 59.6
BolC7t43787H Brassica oleracea HOM05D006770 ORTHO05D008356 3.3e-142 509.2 440 58.4
Migut.M00215 Erythranthe guttata HOM05D006770 ORTHO05D008356 3.3e-142 509.2 443 58.5
DCAR_024417 Daucus carota HOM05D006770 ORTHO05D008356 7.5e-142 508.1 473 56.2
Sp2g13280 Schrenkiella parvula HOM05D006770 ORTHO05D008356 9.7e-142 507.7 441 59.2
BcaC06g34103 Brassica carinata HOM05D006770 ORTHO05D008356 1.3e-141 507.3 467 56.3
C07p32660 Brassica napus HOM05D006770 ORTHO05D008356 4.8e-141 505.4 440 58.6
A06p43970 Brassica napus HOM05D006770 ORTHO05D008356 1.8e-140 503.4 467 56.3
Ah.00g000990 Amaranthus hybridus HOM05D006770 ORTHO05D008356 4.1e-140 502.3 460 57.2
MD16G1284100 Malus domestica HOM05D006770 ORTHO05D008356 2.9e-138 496.1 423 63.1
BraA06t27272Z Brassica rapa HOM05D006770 ORTHO05D008356 3.8e-138 495.7 467 55.5
Gorai.007G379700 Gossypium raimondii HOM05D006770 ORTHO05D008356 5.0e-138 495.4 400 62.0
Peaxi162Scf00670g00024 Petunia axillaris HOM05D006770 ORTHO05D008356 1.5e-134 483.8 401 62.3
Actinidia23351 Actinidia chinensis HOM05D006770 ORTHO05D008356 3.5e-131 472.6 433 60.5
vmacro02830 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 1.9e-129 466.8 327 69.7
HPP92_007114 Vanilla planifolia HOM05D006770 ORTHO05D008356 3.7e-125 452.6 460 52.0
ATR0807G062 Amborella trichopoda HOM05D006770 ORTHO05D008356 7.5e-118 428.3 493 47.7
Lj9P204T39 Lonicera japonica HOM05D006770 ORTHO05D008356 1.2e-112 411.0 316 63.9
SGA_v2.0_scaffold538G52786 Striga asiatica HOM05D006770 ORTHO05D008356 2.1e-112 410.2 462 50.0
SEGI_37300 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 4.0e-111 406.0 399 50.9
SGA_v2.0_scaffold476G52129 Striga asiatica HOM05D006770 ORTHO05D008356 4.0e-111 406.0 462 49.6
Zm00001eb391890 Zea mays HOM05D006770 ORTHO05D008356 2.5e-105 386.7 421 48.7
Sed0018053 Sechium edule HOM05D006770 ORTHO05D008356 2.0e-102 377.1 353 58.6
Os02g0118000 Oryza sativa ssp. japonica HOM05D006770 ORTHO05D008356 1.7e-98 364.0 427 45.7
Gohir.D11G349500 Gossypium hirsutum HOM05D006770 ORTHO05D008356 5.4e-84 315.8 213 67.1
SEGI_07142 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 1.8e-74 284.3 391 40.2
Gohir.A06G000350 Gossypium hirsutum HOM05D006770 ORTHO05D008356 6.7e-74 282.3 197 67.5
Actinidia12910 Actinidia chinensis HOM05D006770 ORTHO05D008356 3.2e-68 263.5 338 49.4
ClCG01G012950 Citrullus lanatus HOM05D006770 ORTHO05D008356 1.6e-56 224.6 192 60.9
CAN.G733.12 Capsicum annuum HOM05D006770 ORTHO05D008356 3.0e-42 177.2 207 49.3
AagrBONN_evm.TU.Sc2ySwM_117.3058 Anthoceros agrestis HOM05D006770 ORTHO05D008356 8.2e-40 169.1 320 31.2
CAN.G332.6 Capsicum annuum HOM05D006770 ORTHO05D008356 9.4e-28 129.0 106 57.5
Gohir.D02G000400 Gossypium hirsutum HOM05D006770 ORTHO05D008356 9.7e-25 119.0 138 47.8
VMungo0720G0800 Vigna mungo HOM05D006770 ORTHO05D008356 3.7e-24 117.1 137 49.6
Mapoly0166s0014 Marchantia polymorpha HOM05D006770 ORTHO05D008356 8.0e-19 99.4 296 26.7
Pp3c13_18720 Physcomitrium patens HOM05D006770 ORTHO05D008356 1.3e-16 92.0 208 30.3
Pp3c13_18722 Physcomitrium patens HOM05D006770 ORTHO05D008356 1.3e-16 92.0 208 30.3
VMungo0331G1801 Vigna mungo HOM05D002295 ORTHO05D008356 4.8e-16 90.1 103 52.4
vmacro02831 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 3.3e-12 77.4 102 51.0
Lsat_1_v5_gn_1_52140 Lactuca sativa HOM05D004824 ORTHO05D003903 2.3e-10 71.2 181 29.3
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 3.0e-10 70.9 124 29.8
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 8.9e-10 69.3 124 28.2
HPP92_006127 Vanilla planifolia HOM05D002479 ORTHO05D002675 8.9e-10 69.3 136 26.5
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 3.4e-09 67.4 121 28.1
Medtr1g008310 Medicago truncatula HOM05D003689 ORTHO05D003950 3.4e-09 67.4 146 24.0
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 4.4e-09 67.0 124 28.2
TAR381G0468 Trochodendron aralioides HOM05D006770 ORTHO05D008356 5.7e-09 66.6 88 46.6
CDE04G3773 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 3.7e-08 63.9 132 27.3
ATR0315G024 Amborella trichopoda HOM05D003689 ORTHO05D003950 3.2e-07 60.8 101 30.7
MBI15_g27201_MAGBIO Magnolia biondii HOM05D006258 ORTHO05D007961 7.0e-07 59.7 133 24.1
CDE05G1655 Ceratophyllum demersum HOM05D007322 ORTHO05D009029 1.6e-06 58.5 227 23.8
FvH4_1g00580 Fragaria vesca HOM05D006258 ORTHO05D007961 1.6e-06 58.5 166 25.9
FAN28G2306 Fragaria x ananassa HOM05D006258 ORTHO05D007961 1.6e-06 58.5 166 25.9
FAN26G2355 Fragaria x ananassa HOM05D006258 ORTHO05D007961 2.0e-06 58.2 166 25.9
Prupe.7G266300 Prunus persica HOM05D006258 ORTHO05D007961 3.5e-06 57.4 133 25.6
MD15G1148600 Malus domestica HOM05D006258 ORTHO05D007961 4.5e-06 57.0 133 24.8
MD15G1423900 Malus domestica HOM05D007322 ORTHO05D009029 4.5e-06 57.0 159 27.0
Hma1.2p1_0969F.1_g242592 Hydrangea macrophylla HOM05D006596 ORTHO05D008497 5.9e-06 56.6 187 21.4


User provided reference genes

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