Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g25261 Fragaria vesca HOM05D003858 ORTHO05D015239 3.5e-55 218.0 108 100.0
FAN08G1067 Fragaria x ananassa HOM05D003858 ORTHO05D015239 1.4e-35 152.9 94 85.1
FAN13G2455 Fragaria x ananassa HOM05D003858 ORTHO05D015239 3.9e-30 134.8 70 95.7
RcHm_v2.0_Chr5g0020401 Rosa chinensis HOM05D003858 ORTHO05D005878 3.0e-22 108.6 74 75.7
FvH4_5g16770 Fragaria vesca HOM05D003858 ORTHO05D005878 5.1e-22 107.8 74 75.7
FAN16G2509 Fragaria x ananassa HOM05D003858 ORTHO05D005878 5.1e-22 107.8 74 75.7
FAN20G1682 Fragaria x ananassa HOM05D003858 ORTHO05D005878 5.1e-22 107.8 74 75.7
Haze_09759 Corylus avellana HOM05D003858 ORTHO05D005878 3.3e-21 105.1 76 68.4
RcHm_v2.0_Chr5g0063241 Rosa chinensis HOM05D003858 ORTHO05D005878 5.7e-21 104.4 90 62.2
Cfa015653 Carpinus fangiana HOM05D003858 ORTHO05D005878 3.7e-20 101.7 76 67.1
Lj7A11G39 Lonicera japonica HOM05D003858 ORTHO05D005878 1.4e-19 99.8 70 77.1
Lj7A12G16 Lonicera japonica HOM05D003858 ORTHO05D005878 1.4e-19 99.8 70 77.1
Prupe.5G151200 Prunus persica HOM05D003858 ORTHO05D005878 4.1e-19 98.2 69 72.5
Haze_07135 Corylus avellana HOM05D003858 ORTHO05D005878 5.3e-19 97.8 76 67.1
Actinidia08869 Actinidia chinensis HOM05D003858 ORTHO05D005878 6.9e-19 97.4 83 60.2
Actinidia36803 Actinidia chinensis HOM05D003858 ORTHO05D015239 6.9e-19 97.4 83 60.2
Cpa.g.sc250.13 Carica papaya HOM05D003858 ORTHO05D005878 6.9e-19 97.4 76 64.5
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 6.9e-19 97.4 76 64.5
Nn4g22329 Nelumbo nucifera HOM05D003858 ORTHO05D005878 6.9e-19 97.4 83 60.2
Hund02439 Selenicereus undatus HOM05D003858 ORTHO05D005878 6.9e-19 97.4 76 64.5
CiPaw.12G042900 Carya illinoinensis HOM05D003858 ORTHO05D005878 9.1e-19 97.1 76 64.5
Dinv23145 Davidia involucrata HOM05D003858 ORTHO05D005878 9.1e-19 97.1 83 60.2
Atru.chr9.1128 Acer truncatum HOM05D003858 ORTHO05D005878 1.2e-18 96.7 76 63.2
HanXRQChr02g0034711 Helianthus annuus HOM05D003858 ORTHO05D005878 1.2e-18 96.7 74 64.9
TWI23G0194 Tripterygium wilfordii HOM05D003858 ORTHO05D005878 1.2e-18 96.7 78 60.3
ECA247G4076 Erigeron canadensis HOM05D003858 ORTHO05D005878 1.5e-18 96.3 83 60.2
THA.LOC104800505 Tarenaya hassleriana HOM05D003858 ORTHO05D005878 1.5e-18 96.3 74 64.9
Ca_07893_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 2.0e-18 95.9 76 64.5
Duzib205G0757 Durio zibethinus HOM05D003858 ORTHO05D005878 2.0e-18 95.9 76 63.2
Manes.06G119400 Manihot esculenta HOM05D003858 ORTHO05D005878 2.0e-18 95.9 76 63.2
Thecc.03G129000 Theobroma cacao HOM05D003858 ORTHO05D005878 2.0e-18 95.9 76 63.2
TAR371G0204 Trochodendron aralioides HOM05D003858 ORTHO05D005878 2.0e-18 95.9 75 65.3
CSS0032323 Camellia sinensis var. sinensis HOM05D003858 ORTHO05D005878 2.6e-18 95.5 83 57.8
MD14G1157300 Malus domestica HOM05D003858 ORTHO05D005878 2.6e-18 95.5 69 69.6
QL10p002959 Quercus lobata HOM05D003858 ORTHO05D005878 2.6e-18 95.5 76 64.5
DCAR_001872 Daucus carota HOM05D003858 ORTHO05D005878 3.4e-18 95.1 83 59.0
DCAR_021618 Daucus carota HOM05D003858 ORTHO05D005878 3.4e-18 95.1 83 59.0
SHI21468 Sapria himalayana HOM05D003858 ORTHO05D005878 4.5e-18 94.7 72 66.7
SGA_v2.0_scaffold28G11963 Striga asiatica HOM05D003858 ORTHO05D005878 4.5e-18 94.7 83 57.8
SGA_v2.0_scaffold2G01192 Striga asiatica HOM05D003858 ORTHO05D005878 4.5e-18 94.7 83 57.8
CiPaw.15G056500 Carya illinoinensis HOM05D003858 ORTHO05D005878 5.9e-18 94.4 76 61.8
Lalb_Chr01g0021111 Lupinus albus HOM05D003858 ORTHO05D005878 5.9e-18 94.4 74 66.2
Oeu001550.1 Olea europaea HOM05D003858 ORTHO05D005878 5.9e-18 94.4 83 55.4
VMungo1383G2243 Vigna mungo HOM05D003858 ORTHO05D005878 5.9e-18 94.4 76 65.8
EL10Ac9g21903 Beta vulgaris HOM05D003858 ORTHO05D005878 7.7e-18 94.0 71 64.8
CANSAT80G0729 Cannabis sativa HOM05D003858 ORTHO05D005878 7.7e-18 94.0 74 63.5
COL.COLO4_28121 Corchorus olitorius HOM05D003858 ORTHO05D005878 7.7e-18 94.0 76 60.5
VMungo1383G3568 Vigna mungo HOM05D003858 ORTHO05D005878 7.7e-18 94.0 76 65.8
AUR62007839 Chenopodium quinoa HOM05D003858 ORTHO05D005878 1.0e-17 93.6 83 56.6
AUR62028258 Chenopodium quinoa HOM05D003858 ORTHO05D005878 1.0e-17 93.6 83 56.6
Lj1g0027711 Lotus japonicus HOM05D003858 ORTHO05D005878 1.0e-17 93.6 76 63.2
SalBow6G4120 Salvia bowleyana HOM05D003858 ORTHO05D005878 1.0e-17 93.6 76 60.5
SalBow7G4372 Salvia bowleyana HOM05D003858 ORTHO05D005878 1.0e-17 93.6 76 60.5
arahy.Tifrunner.gnm1.ann1.L81EPG Arachis hypogaea HOM05D003858 ORTHO05D005878 1.3e-17 93.2 70 65.7
arahy.Tifrunner.gnm1.ann1.LEEI49 Arachis hypogaea HOM05D003858 ORTHO05D005878 1.3e-17 93.2 70 65.7
arahy.Tifrunner.gnm1.ann1.RIH0QL Arachis hypogaea HOM05D003858 ORTHO05D015239 1.3e-17 93.2 70 65.7
AUR62003032 Chenopodium quinoa HOM05D003858 ORTHO05D005878 1.3e-17 93.2 83 56.6
MBI07_g31017_MAGBIO Magnolia biondii HOM05D003858 ORTHO05D005878 1.3e-17 93.2 83 55.4
Rhsim10G0051500 Rhododendron simsii HOM05D003858 ORTHO05D005878 1.3e-17 93.2 83 57.8
Rhsim12G0174400 Rhododendron simsii HOM05D003858 ORTHO05D005878 1.3e-17 93.2 83 57.8
Solyc08g080850.4 Solanum lycopersicum HOM05D003858 ORTHO05D005878 1.3e-17 93.2 76 60.5
Sopen08g029150 Solanum pennellii HOM05D003858 ORTHO05D005878 1.3e-17 93.2 76 60.5
PGSC0003DMG400012349 Solanum tuberosum HOM05D003858 ORTHO05D005878 1.3e-17 93.2 76 60.5
vmacro16677 Vaccinium macrocarpon HOM05D003858 ORTHO05D005878 1.3e-17 93.2 83 57.8
Ah.01g020640 Amaranthus hybridus HOM05D003858 ORTHO05D005878 1.7e-17 92.8 76 61.8
Gohir.D03G114300 Gossypium hirsutum HOM05D003858 ORTHO05D005878 1.7e-17 92.8 76 60.5
Gorai.003G120600 Gossypium raimondii HOM05D003858 ORTHO05D005878 1.7e-17 92.8 76 60.5
Nitab4.5_0006042g0010 Nicotiana tabacum HOM05D003858 ORTHO05D005878 1.7e-17 92.8 74 60.8
Migut.N03254 Erythranthe guttata HOM05D003858 ORTHO05D005878 2.2e-17 92.4 83 55.4
Gohir.A03G052800 Gossypium hirsutum HOM05D003858 ORTHO05D005878 2.2e-17 92.4 76 60.5
Aqoxy3G00800 Aquilegia oxysepala HOM05D003858 ORTHO05D005878 2.9e-17 92.0 74 62.2
FvH4_5g08310 Fragaria vesca HOM05D003858 ORTHO05D005878 2.9e-17 92.0 74 60.8
FAN04G1110 Fragaria x ananassa HOM05D003858 ORTHO05D005878 2.9e-17 92.0 74 60.8
FAN08G1590 Fragaria x ananassa HOM05D003858 ORTHO05D005878 2.9e-17 92.0 74 60.8
FAN18G4532 Fragaria x ananassa HOM05D003858 ORTHO05D005878 2.9e-17 92.0 74 60.8
Phvul.008G067600 Phaseolus vulgaris HOM05D003858 ORTHO05D005878 2.9e-17 92.0 70 68.6
Sc10g0010460 Simmondsia chinensis HOM05D003858 ORTHO05D005878 2.9e-17 92.0 76 60.5
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 2.9e-17 92.0 76 59.2
Glyma.09G261800 Glycine max HOM05D003858 ORTHO05D005878 3.8e-17 91.7 76 63.2
Nitab4.5_0005642g0040 Nicotiana tabacum HOM05D003858 ORTHO05D005878 3.8e-17 91.7 74 59.5
Peaxi162Scf00119g00520 Petunia axillaris HOM05D003858 ORTHO05D005878 3.8e-17 91.7 76 60.5
Potri.015G096100 Populus trichocarpa HOM05D003858 ORTHO05D005878 3.8e-17 91.7 76 60.5
Sabra15G0116900 Salix brachista HOM05D003858 ORTHO05D005878 3.8e-17 91.7 76 60.5
MELO3C002182.2 Cucumis melo HOM05D003858 ORTHO05D005878 5.0e-17 91.3 70 62.9
Thhalv10000120m.g Eutrema salsugineum HOM05D003858 ORTHO05D005878 5.0e-17 91.3 74 62.2
Glyma.18G230300 Glycine max HOM05D003858 ORTHO05D005878 5.0e-17 91.3 76 63.2
Lsat_1_v5_gn_1_28960 Lactuca sativa HOM05D003858 ORTHO05D005878 5.0e-17 91.3 76 60.5
unitig_21.g20184 Utricularia gibba HOM05D003858 ORTHO05D005878 5.0e-17 91.3 76 56.6
HPP92_020969 Vanilla planifolia HOM05D003858 ORTHO05D005878 6.5e-17 90.9 76 56.6
MD06G1142000 Malus domestica HOM05D003858 ORTHO05D005878 8.5e-17 90.5 69 66.7
AL4G16080 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 1.1e-16 90.1 74 62.2
AT5G37350 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 1.1e-16 90.1 74 62.2
PGR004G1062 Punica granatum HOM05D003858 ORTHO05D005878 1.1e-16 90.1 73 58.9
RcHm_v2.0_Chr7g0190211 Rosa chinensis HOM05D003858 ORTHO05D005878 1.1e-16 90.1 74 59.5
Sp4g03970 Schrenkiella parvula HOM05D003858 ORTHO05D005878 1.1e-16 90.1 74 62.2
SMO117G0291 Selaginella moellendorffii HOM05D003858 ORTHO05D005878 1.1e-16 90.1 74 63.5
AT2G24990 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 1.4e-16 89.7 74 62.2
BcaC02g08384 Brassica carinata HOM05D003858 ORTHO05D005878 1.4e-16 89.7 74 62.2
A04p19370 Brassica napus HOM05D003858 ORTHO05D005878 1.4e-16 89.7 74 62.2
C04p54940 Brassica napus HOM05D003858 ORTHO05D005878 1.4e-16 89.7 74 62.2
BolC4t27030H Brassica oleracea HOM05D003858 ORTHO05D005878 1.4e-16 89.7 74 62.2
BraA04t17533Z Brassica rapa HOM05D003858 ORTHO05D005878 1.4e-16 89.7 74 62.2
Carub.0004s0455 Capsella rubella HOM05D003858 ORTHO05D005878 1.4e-16 89.7 74 62.2
Hma1.2p1_0014F.1_g009460 Hydrangea macrophylla HOM05D003858 ORTHO05D005878 1.4e-16 89.7 83 56.6
PSO478G4955 Papaver somniferum HOM05D003858 ORTHO05D005878 1.4e-16 89.7 83 56.6
Aa31LG8G17300 Aethionema arabicum HOM05D003858 ORTHO05D005878 1.9e-16 89.4 74 59.5
BcaB06g28028 Brassica carinata HOM05D003858 ORTHO05D005878 1.9e-16 89.4 70 65.7
Cc10_g13400 Coffea canephora HOM05D003858 ORTHO05D005878 1.9e-16 89.4 83 55.4
CsaV3_1G007630 Cucumis sativus L. HOM05D003858 ORTHO05D005878 1.9e-16 89.4 70 61.4
Sed0027713 Sechium edule HOM05D003858 ORTHO05D005878 1.9e-16 89.4 70 61.4
Aa31sc86G50 Aethionema arabicum HOM05D003858 ORTHO05D005878 2.5e-16 89.0 69 65.2
RcHm_v2.0_Chr5g0063291 Rosa chinensis HOM05D003858 ORTHO05D005878 3.2e-16 88.6 69 63.8
CAN.G774.2 Capsicum annuum HOM05D003858 ORTHO05D005878 4.2e-16 88.2 76 57.9
SHI21367 Sapria himalayana HOM05D003858 ORTHO05D005878 4.2e-16 88.2 99 50.5
SEGI_19941 Sequoiadendron giganteum HOM05D003858 ORTHO05D005878 4.2e-16 88.2 70 62.9
Eucgr.E01497 Eucalyptus grandis HOM05D003858 ORTHO05D005878 5.5e-16 87.8 73 60.3
AL7G45930 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 7.2e-16 87.4 74 60.8
CARHR116740 Cardamine hirsuta HOM05D003858 ORTHO05D005878 7.2e-16 87.4 74 62.2
PSO017G3328 Papaver somniferum HOM05D003858 ORTHO05D005878 7.2e-16 87.4 83 55.4
Medtr7g090710 Medicago truncatula HOM05D003858 ORTHO05D005878 9.4e-16 87.0 76 57.9
CDE05G2345 Ceratophyllum demersum HOM05D003858 ORTHO05D005878 1.2e-15 86.7 70 61.4
CDE05G1919 Ceratophyllum demersum HOM05D003858 ORTHO05D015239 1.6e-15 86.3 70 62.9
Psat3g110800 Pisum sativum HOM05D003858 ORTHO05D005878 1.6e-15 86.3 76 59.2
TAR629G0830 Trochodendron aralioides HOM05D003858 ORTHO05D005878 1.6e-15 86.3 76 60.5
Os07g0162300 Oryza sativa ssp. japonica HOM05D003858 ORTHO05D005878 2.7e-15 85.5 76 56.6
Pp3c21_1450 Physcomitrium patens HOM05D003858 ORTHO05D005878 2.7e-15 85.5 68 61.8
Zm00001eb103140 Zea mays HOM05D003858 ORTHO05D005878 3.6e-15 85.1 76 55.3
Ca_28300_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 4.7e-15 84.7 76 55.3
PSO170G6136 Papaver somniferum HOM05D003858 ORTHO05D005878 4.7e-15 84.7 83 53.0
Zm00001eb256840 Zea mays HOM05D003858 ORTHO05D005878 6.1e-15 84.3 76 55.3
Mapoly0084s0039 Marchantia polymorpha HOM05D003858 ORTHO05D005878 1.0e-14 83.6 67 62.7
Medtr7g076710 Medicago truncatula HOM05D003858 ORTHO05D005878 1.4e-14 83.2 76 57.9
TPR.G2433 Trifolium pratense HOM05D003858 ORTHO05D005878 1.4e-14 83.2 76 57.9
TPR.G23280 Trifolium pratense HOM05D003858 ORTHO05D005878 1.8e-14 82.8 70 62.9
Lj5C96T4 Lonicera japonica HOM05D003858 ORTHO05D005878 3.0e-14 82.0 76 55.3
Cc10_g13370 Coffea canephora HOM05D003858 ORTHO05D015239 6.7e-14 80.9 70 55.7
PRCOL_00003781 Prasinoderma coloniale HOM05D003858 ORTHO05D005878 1.5e-13 79.7 74 55.4
ATR0559G302 Amborella trichopoda HOM05D003858 ORTHO05D005878 3.3e-13 78.6 62 66.1
FAN08G1033 Fragaria x ananassa HOM05D003858 ORTHO05D005878 4.4e-13 78.2 52 78.8
CBR_g61467 Chara braunii HOM05D003858 ORTHO05D005878 5.7e-13 77.8 74 50.0
PSO423G0213 Papaver somniferum HOM05D003858 ORTHO05D005878 9.7e-13 77.0 77 51.9
PSO675G5360 Papaver somniferum HOM05D003858 ORTHO05D015239 9.7e-13 77.0 77 51.9
TPR.G21069 Trifolium pratense HOM05D003858 ORTHO05D005878 2.2e-12 75.9 76 53.9
PSO724G1315 Papaver somniferum HOM05D003858 ORTHO05D005878 1.8e-11 72.8 77 49.4
Cre13.g580900 Chlamydomonas reinhardtii HOM05D003858 ORTHO05D005878 3.1e-11 72.0 72 50.0
Medtr7g012400 Medicago truncatula HOM05D003858 ORTHO05D005878 4.1e-11 71.6 81 54.3
AagrBONN_evm.TU.Sc2ySwM_228.678 Anthoceros agrestis HOM05D003858 ORTHO05D005878 7.0e-11 70.9 70 51.4
PSO421G0376 Papaver somniferum HOM05D003858 ORTHO05D015239 4.5e-10 68.2 69 52.2
PSO724G1140 Papaver somniferum HOM05D003858 ORTHO05D005878 1.0e-09 67.0 81 45.7
PSO170G3101 Papaver somniferum HOM05D003858 ORTHO05D005878 6.5e-09 64.3 85 41.2
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 1.1e-08 63.5 76 42.1
PSO724G0964 Papaver somniferum HOM05D003858 ORTHO05D005878 1.1e-08 63.5 83 42.2
Haze_27048 Corylus avellana HOM05D003858 ORTHO05D005878 2.5e-08 62.4 70 42.9
ClCG01G014690 Citrullus lanatus HOM05D003858 ORTHO05D005878 7.2e-08 60.8 68 47.1
DCAR_029022 Daucus carota HOM05D003858 ORTHO05D005878 1.4e-06 56.6 71 42.3


User provided reference genes

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