Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g24770 Fragaria vesca HOM05D067251 ORTHO05D017820 6.3e-58 227.3 117 100.0
FAN13G1007 Fragaria x ananassa HOM05D067251 ORTHO05D017820 3.0e-36 155.2 118 77.1
FAN19G2601 Fragaria x ananassa HOM05D003720 ORTHO05D005312 1.4e-17 93.2 90 66.7
FvH4_1g04290 Fragaria vesca HOM05D003720 ORTHO05D005312 4.1e-17 91.7 91 63.7
FAN26G1450 Fragaria x ananassa HOM05D003720 ORTHO05D005312 4.1e-17 91.7 91 63.7
FAN28G0537 Fragaria x ananassa HOM05D003720 ORTHO05D005312 4.1e-17 91.7 91 63.7
RcHm_v2.0_Chr2g0089861 Rosa chinensis HOM05D003720 ORTHO05D005312 5.4e-17 91.3 91 62.6
MD02G1042600 Malus domestica HOM05D003720 ORTHO05D005312 9.5e-14 80.5 87 60.9
Actinidia26424 Actinidia chinensis HOM05D003720 ORTHO05D005312 1.1e-12 77.0 97 52.6
Actinidia07451 Actinidia chinensis HOM05D003720 ORTHO05D005312 1.4e-12 76.6 97 52.6
Manes.03G068200 Manihot esculenta HOM05D003720 ORTHO05D005312 2.3e-12 75.9 93 54.8
Prupe.7G234400 Prunus persica HOM05D003720 ORTHO05D005312 2.3e-12 75.9 87 58.6
MD15G1181200 Malus domestica HOM05D003720 ORTHO05D005312 5.2e-12 74.7 87 56.3
GSVIVG01015442001 Vitis vinifera HOM05D003720 ORTHO05D005312 5.2e-12 74.7 91 51.6
CSS0011692 Camellia sinensis var. sinensis HOM05D003720 ORTHO05D005312 6.8e-12 74.3 94 51.1
CSS0041174 Camellia sinensis var. sinensis HOM05D003720 ORTHO05D005312 6.8e-12 74.3 94 51.1
Cfa003295 Carpinus fangiana HOM05D003720 ORTHO05D005312 6.8e-12 74.3 87 56.3
Rhsim03G0245400 Rhododendron simsii HOM05D003720 ORTHO05D005312 2.0e-11 72.8 86 55.8
Dinv41570 Davidia involucrata HOM05D003720 ORTHO05D005312 4.4e-11 71.6 91 52.7
Oeu002223.1 Olea europaea HOM05D003720 ORTHO05D005312 4.4e-11 71.6 89 52.8
Dinv36598 Davidia involucrata HOM05D003720 ORTHO05D005312 5.8e-11 71.2 91 53.8
Haze_25676 Corylus avellana HOM05D003720 ORTHO05D005312 7.5e-11 70.9 80 58.8
Atru.chr7.1285 Acer truncatum HOM05D003720 ORTHO05D005312 9.9e-11 70.5 96 53.1
Lj4g0009521 Lotus japonicus HOM05D003720 ORTHO05D005312 9.9e-11 70.5 88 55.7
TAR383G0813 Trochodendron aralioides HOM05D003720 ORTHO05D005312 1.3e-10 70.1 94 50.0
Aqoxy7G01852 Aquilegia oxysepala HOM05D003720 ORTHO05D005312 1.7e-10 69.7 86 53.5
TAR626G1854 Trochodendron aralioides HOM05D003720 ORTHO05D005312 2.9e-10 68.9 87 54.0
CiPaw.03G235900 Carya illinoinensis HOM05D003720 ORTHO05D005312 3.7e-10 68.6 91 50.5
Cc06_g09260 Coffea canephora HOM05D003720 ORTHO05D005312 3.7e-10 68.6 91 50.5
arahy.Tifrunner.gnm1.ann1.F3YJTF Arachis hypogaea HOM05D003720 ORTHO05D005312 4.9e-10 68.2 88 55.7
arahy.Tifrunner.gnm1.ann1.S8F21X Arachis hypogaea HOM05D003720 ORTHO05D005312 4.9e-10 68.2 88 55.7
Os10g0575200 Oryza sativa ssp. japonica HOM05D003720 ORTHO05D005312 4.9e-10 68.2 86 53.5
CsaV3_1G030910 Cucumis sativus L. HOM05D003720 ORTHO05D005312 8.3e-10 67.4 84 57.1
COL.COLO4_34941 Corchorus olitorius HOM05D003720 ORTHO05D005312 1.1e-09 67.0 91 52.7
EL10Ac8g19346 Beta vulgaris HOM05D003720 ORTHO05D005312 1.4e-09 66.6 85 52.9
Nn8g39280 Nelumbo nucifera HOM05D003720 ORTHO05D005312 1.4e-09 66.6 86 53.5
Potri.018G072600 Populus trichocarpa HOM05D003720 ORTHO05D005312 1.4e-09 66.6 95 51.6
Solyc08g021920.4 Solanum lycopersicum HOM05D003720 ORTHO05D005312 1.4e-09 66.6 91 50.5
Sopen08g011820 Solanum pennellii HOM05D003720 ORTHO05D005312 1.4e-09 66.6 91 50.5
CAN.G368.4 Capsicum annuum HOM05D003720 ORTHO05D005312 1.9e-09 66.2 91 50.5
TWI63G0927 Tripterygium wilfordii HOM05D003720 ORTHO05D005312 1.9e-09 66.2 91 51.6
ECA234G2971 Erigeron canadensis HOM05D003720 ORTHO05D005312 2.4e-09 65.9 88 51.1
Hma1.2p1_0245F.1_g101400 Hydrangea macrophylla HOM05D003720 ORTHO05D005312 2.4e-09 65.9 95 47.4
QL02p086231 Quercus lobata HOM05D003720 ORTHO05D005312 2.4e-09 65.9 95 50.5
PGSC0003DMG400013949 Solanum tuberosum HOM05D003720 ORTHO05D005312 2.4e-09 65.9 91 50.5
PSO170G5328 Papaver somniferum HOM05D003720 ORTHO05D005312 3.2e-09 65.5 86 52.3
Gohir.D06G058501 Gossypium hirsutum HOM05D003720 ORTHO05D005312 4.1e-09 65.1 91 51.6
Gorai.010G068600 Gossypium raimondii HOM05D003720 ORTHO05D005312 4.1e-09 65.1 91 51.6
PSO357G0216 Papaver somniferum HOM05D003720 ORTHO05D005312 4.1e-09 65.1 86 52.3
CANSAT56G4488 Cannabis sativa HOM05D003720 ORTHO05D005312 7.1e-09 64.3 93 50.5
vmacro06189 Vaccinium macrocarpon HOM05D003720 ORTHO05D005312 7.1e-09 64.3 86 51.2
MSTRG.6069 Avicennia marina HOM05D003720 ORTHO05D005312 9.2e-09 63.9 93 52.7
ClCG06G010450 Citrullus lanatus HOM05D003720 ORTHO05D005312 9.2e-09 63.9 77 59.7
PGR102G1985 Punica granatum HOM05D003720 ORTHO05D005312 9.2e-09 63.9 85 50.6
Sed0024242 Sechium edule HOM05D003720 ORTHO05D005312 9.2e-09 63.9 83 55.4
Duzib168G1140 Durio zibethinus HOM05D003720 ORTHO05D005312 1.2e-08 63.5 86 54.7
Eucgr.C04138 Eucalyptus grandis HOM05D003720 ORTHO05D005312 1.2e-08 63.5 88 50.0
Nitab4.5_0000237g0010 Nicotiana tabacum HOM05D003720 ORTHO05D005312 1.2e-08 63.5 91 48.4
Nitab4.5_0002116g0020 Nicotiana tabacum HOM05D003720 ORTHO05D017820 1.2e-08 63.5 86 50.0
Phvul.003G176300 Phaseolus vulgaris HOM05D003720 ORTHO05D005312 1.2e-08 63.5 97 48.5
Peaxi162Scf00256g00812 Petunia axillaris HOM05D003720 ORTHO05D017820 1.6e-08 63.2 84 51.2
ATR0561G176 Amborella trichopoda HOM05D003720 ORTHO05D005312 2.1e-08 62.8 87 50.6
Lalb_Chr13g0302281 Lupinus albus HOM05D003720 ORTHO05D005312 2.1e-08 62.8 87 51.7
Sabra18G0064000 Salix brachista HOM05D003720 ORTHO05D005312 2.1e-08 62.8 85 54.1
TPR.G26776 Trifolium pratense HOM05D003720 ORTHO05D005312 2.1e-08 62.8 77 53.2
SGA_v2.0_scaffold45G17079 Striga asiatica HOM05D003720 ORTHO05D005312 2.7e-08 62.4 85 51.8
Gohir.A06G060200 Gossypium hirsutum HOM05D003720 ORTHO05D005312 3.5e-08 62.0 91 50.5
HPP92_014850 Vanilla planifolia HOM05D003720 ORTHO05D005312 3.5e-08 62.0 82 52.4
Ciclev10007224m.g Citrus clementina HOM05D003720 ORTHO05D005312 4.6e-08 61.6 91 52.7
SEGI_35777 Sequoiadendron giganteum HOM05D003720 ORTHO05D005312 6.0e-08 61.2 85 48.2
Cpa.g.sc23.157 Carica papaya HOM05D003720 ORTHO05D005312 7.8e-08 60.8 94 50.0
Sc08g0004790 Simmondsia chinensis HOM05D003720 ORTHO05D005312 1.0e-07 60.5 86 48.8
Glyma.05G012400 Glycine max HOM05D003720 ORTHO05D005312 1.3e-07 60.1 88 50.0
Gohir.A05G021000 Gossypium hirsutum HOM05D003720 ORTHO05D005312 1.3e-07 60.1 88 50.0
Gohir.D05G022400 Gossypium hirsutum HOM05D003720 ORTHO05D005312 1.3e-07 60.1 88 50.0
Gorai.009G022700 Gossypium raimondii HOM05D003720 ORTHO05D005312 1.3e-07 60.1 88 50.0
AUR62027382 Chenopodium quinoa HOM05D003720 ORTHO05D005312 1.7e-07 59.7 80 53.8
AUR62031297 Chenopodium quinoa HOM05D003720 ORTHO05D005312 1.7e-07 59.7 89 51.7
Hund12706 Selenicereus undatus HOM05D003720 ORTHO05D005312 1.7e-07 59.7 87 50.6
Migut.J01184 Erythranthe guttata HOM05D003720 ORTHO05D005312 2.3e-07 59.3 83 53.0
Thecc.09G115700 Theobroma cacao HOM05D003720 ORTHO05D005312 3.0e-07 58.9 91 49.5
VMungo1215G1596 Vigna mungo HOM05D003720 ORTHO05D005312 3.0e-07 58.9 88 48.9
Lsat_1_v5_gn_5_99761 Lactuca sativa HOM05D003720 ORTHO05D005312 6.6e-07 57.8 82 50.0
FAN04G1534 Fragaria x ananassa HOM05D001835 ORTHO05D001899 8.6e-07 57.4 54 55.6
Glyma.17G120500 Glycine max HOM05D003720 ORTHO05D005312 8.6e-07 57.4 88 47.7
FvH4_5g24990 Fragaria vesca HOM05D001835 ORTHO05D001899 1.1e-06 57.0 54 55.6
FAN08G0398 Fragaria x ananassa HOM05D001835 ORTHO05D001899 1.1e-06 57.0 54 55.6
FAN18G0528 Fragaria x ananassa HOM05D001835 ORTHO05D001899 1.1e-06 57.0 54 55.6
TAR374G0606 Trochodendron aralioides HOM05D003720 ORTHO05D017820 2.5e-06 55.8 41 75.6
RcHm_v2.0_Chr7g0215271 Rosa chinensis HOM05D001835 ORTHO05D001899 5.6e-06 54.7 54 51.9
THA.LOC104809021 Tarenaya hassleriana HOM05D003720 ORTHO05D005312 5.6e-06 54.7 85 51.8
Zm00001eb390320 Zea mays HOM05D003720 ORTHO05D005312 5.6e-06 54.7 86 51.2


User provided reference genes

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