Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g23294 Fragaria vesca HOM05D011659 ORTHO05D013873 6.6e-105 384.0 192 100.0
FvH4_4g08723 Fragaria vesca HOM05D011659 ORTHO05D013873 7.6e-101 370.5 192 95.8
FvH4_7g06950 Fragaria vesca HOM05D011659 ORTHO05D013873 4.8e-87 324.7 170 94.1
FvH4_6g35111 Fragaria vesca HOM05D011659 ORTHO05D013873 1.8e-86 322.8 164 97.6
FvH4_4g18841 Fragaria vesca HOM05D011659 ORTHO05D013873 4.0e-86 321.6 164 97.6
FvH4_6g28151 Fragaria vesca HOM05D011659 ORTHO05D013873 4.0e-86 321.6 164 97.6
FvH4_3g31381 Fragaria vesca HOM05D011659 ORTHO05D013873 8.2e-71 270.8 141 97.9
FvH4_3g30873 Fragaria vesca HOM05D011659 ORTHO05D013873 2.0e-48 196.4 120 87.5
FvH4_4g03590 Fragaria vesca HOM05D002050 ORTHO05D001949 4.0e-09 65.9 51 70.6
RcHm_v2.0_Chr4g0392961 Rosa chinensis HOM05D002050 ORTHO05D001949 4.0e-09 65.9 51 70.6
DCAR_023951 Daucus carota HOM05D002050 ORTHO05D001949 9.8e-08 61.2 51 62.7
PSO017G1821 Papaver somniferum HOM05D002050 ORTHO05D001949 9.8e-08 61.2 51 64.7
PSO017G2989 Papaver somniferum HOM05D002050 ORTHO05D001949 9.8e-08 61.2 51 64.7
PSO675G3273 Papaver somniferum HOM05D002050 ORTHO05D001949 9.8e-08 61.2 51 64.7
PSO675G5994 Papaver somniferum HOM05D002050 ORTHO05D001949 9.8e-08 61.2 51 64.7
Oeu003687.2 Olea europaea HOM05D002050 ORTHO05D001949 1.3e-07 60.8 51 64.7
FvH4_4g12081 Fragaria vesca HOM05D011659 ORTHO05D196832 1.7e-07 60.5 28 100.0
Lj5g0014393 Lotus japonicus HOM05D002050 ORTHO05D001949 1.7e-07 60.5 32 90.6
AagrBONN_evm.TU.Sc2ySwM_368.2866 Anthoceros agrestis HOM05D002050 ORTHO05D001949 2.2e-07 60.1 51 62.7
CiPaw.01G169800 Carya illinoinensis HOM05D002050 ORTHO05D001949 2.9e-07 59.7 51 62.7
Ciclev10020582m.g Citrus clementina HOM05D002050 ORTHO05D001949 2.9e-07 59.7 51 62.7
Mapoly0054s0045 Marchantia polymorpha HOM05D002050 ORTHO05D001949 2.9e-07 59.7 51 62.7
Oeu018053.1 Olea europaea HOM05D002050 ORTHO05D001949 2.9e-07 59.7 51 62.7
HPP92_011692 Vanilla planifolia HOM05D002050 ORTHO05D001949 2.9e-07 59.7 51 62.7
Dinv28781 Davidia involucrata HOM05D002050 ORTHO05D001949 3.7e-07 59.3 51 62.7
MD15G1147900 Malus domestica HOM05D002050 ORTHO05D001949 3.7e-07 59.3 51 64.7
Nn7g37527 Nelumbo nucifera HOM05D002050 ORTHO05D001949 3.7e-07 59.3 51 62.7
Pp3c11_6420 Physcomitrium patens HOM05D002050 ORTHO05D001949 3.7e-07 59.3 51 62.7
Pp3c1_7160 Physcomitrium patens HOM05D002050 ORTHO05D001949 3.7e-07 59.3 51 62.7
Pp3c2_31540 Physcomitrium patens HOM05D002050 ORTHO05D001949 3.7e-07 59.3 51 62.7
Pp3c7_25660 Physcomitrium patens HOM05D002050 ORTHO05D001949 3.7e-07 59.3 51 62.7
CDE05G2908 Ceratophyllum demersum HOM05D002050 ORTHO05D001949 4.9e-07 58.9 32 90.6
CDE11G1066 Ceratophyllum demersum HOM05D002050 ORTHO05D001949 4.9e-07 58.9 32 90.6
Oeu003685.1 Olea europaea HOM05D002050 ORTHO05D001949 4.9e-07 58.9 50 64.0
AUR62028627 Chenopodium quinoa HOM05D002050 ORTHO05D001949 6.4e-07 58.5 32 87.5
Prupe.7G266900 Prunus persica HOM05D002050 ORTHO05D001949 6.4e-07 58.5 51 60.8
Thecc.04G162900 Theobroma cacao HOM05D002050 ORTHO05D001949 6.4e-07 58.5 51 60.8
Atru.chr4.1479 Acer truncatum HOM05D002050 ORTHO05D001949 8.3e-07 58.2 51 60.8
Atru.chr4.1509 Acer truncatum HOM05D002050 ORTHO05D001949 8.3e-07 58.2 51 60.8
ATR0743G085 Amborella trichopoda HOM05D002050 ORTHO05D001949 8.3e-07 58.2 51 60.8
CiPaw.02G099900 Carya illinoinensis HOM05D002050 ORTHO05D001949 8.3e-07 58.2 51 60.8
Haze_01352 Corylus avellana HOM05D002050 ORTHO05D001949 8.3e-07 58.2 51 60.8
ECA247G0790 Erigeron canadensis HOM05D002050 ORTHO05D001949 8.3e-07 58.2 51 60.8
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 8.3e-07 58.2 51 60.8
Migut.N03054 Erythranthe guttata HOM05D002050 ORTHO05D001949 8.3e-07 58.2 51 60.8
FvH4_1g00510 Fragaria vesca HOM05D002050 ORTHO05D001949 8.3e-07 58.2 51 60.8
FAN28G2173 Fragaria x ananassa HOM05D002050 ORTHO05D001949 8.3e-07 58.2 51 60.8
Gohir.D02G008600 Gossypium hirsutum HOM05D002050 ORTHO05D001949 8.3e-07 58.2 51 60.8
Gorai.005G010200 Gossypium raimondii HOM05D002050 ORTHO05D001949 8.3e-07 58.2 51 60.8
HanXRQChr10g0281211 Helianthus annuus HOM05D002050 ORTHO05D001949 8.3e-07 58.2 51 60.8
Manes.01G017000 Manihot esculenta HOM05D002050 ORTHO05D001949 8.3e-07 58.2 51 60.8
THA.LOC104826641 Tarenaya hassleriana HOM05D002050 ORTHO05D001949 8.3e-07 58.2 51 60.8
TWI15G0506 Tripterygium wilfordii HOM05D002050 ORTHO05D001949 8.3e-07 58.2 51 60.8
TWI56G0690 Tripterygium wilfordii HOM05D002050 ORTHO05D001949 8.3e-07 58.2 51 60.8
VMungo0720G1482 Vigna mungo HOM05D002050 ORTHO05D001949 8.3e-07 58.2 51 60.8
VMungo1080G0785 Vigna mungo HOM05D002050 ORTHO05D001949 8.3e-07 58.2 51 60.8
CSS0000879 Camellia sinensis var. sinensis HOM05D002050 ORTHO05D001949 1.1e-06 57.8 51 60.8
Migut.D00761 Erythranthe guttata HOM05D002050 ORTHO05D001949 1.1e-06 57.8 51 60.8
Migut.D00762 Erythranthe guttata HOM05D002050 ORTHO05D001949 1.1e-06 57.8 51 60.8
Eucgr.G01605 Eucalyptus grandis HOM05D002050 ORTHO05D001949 1.1e-06 57.8 51 60.8
MD02G1004200 Malus domestica HOM05D002050 ORTHO05D001949 1.1e-06 57.8 51 60.8
MD15G1148000 Malus domestica HOM05D002050 ORTHO05D001949 1.1e-06 57.8 51 60.8
Prupe.1G039100 Prunus persica HOM05D002050 ORTHO05D001949 1.1e-06 57.8 51 60.8
RcHm_v2.0_Chr2g0085141 Rosa chinensis HOM05D002050 ORTHO05D001949 1.1e-06 57.8 51 62.7
EL10Ac8g18331 Beta vulgaris HOM05D002050 ORTHO05D001949 1.4e-06 57.4 32 84.4
AUR62021346 Chenopodium quinoa HOM05D002050 ORTHO05D001949 1.4e-06 57.4 32 84.4
AUR62033260 Chenopodium quinoa HOM05D002050 ORTHO05D001949 1.4e-06 57.4 32 84.4
COL.COLO4_06765 Corchorus olitorius HOM05D002050 ORTHO05D001949 1.4e-06 57.4 32 84.4
ECA236G3700 Erigeron canadensis HOM05D002050 ORTHO05D001949 1.4e-06 57.4 32 84.4
Gohir.D10G121600 Gossypium hirsutum HOM05D002050 ORTHO05D001949 1.4e-06 57.4 51 60.8
Gorai.011G133700 Gossypium raimondii HOM05D002050 ORTHO05D001949 1.4e-06 57.4 51 60.8
Lalb_Chr17g0342251 Lupinus albus HOM05D002050 ORTHO05D001949 1.4e-06 57.4 51 60.8
Nitab4.5_0001015g0020 Nicotiana tabacum HOM05D002050 ORTHO05D001949 1.4e-06 57.4 32 87.5
Nitab4.5_0001348g0180 Nicotiana tabacum HOM05D002050 ORTHO05D001949 1.4e-06 57.4 32 87.5
Nitab4.5_0002311g0130 Nicotiana tabacum HOM05D002050 ORTHO05D001949 1.4e-06 57.4 32 87.5
Nitab4.5_0002641g0040 Nicotiana tabacum HOM05D002050 ORTHO05D001949 1.4e-06 57.4 32 87.5
Nitab4.5_0004982g0080 Nicotiana tabacum HOM05D002050 ORTHO05D001949 1.4e-06 57.4 32 87.5
Peaxi162Scf00372g00069 Petunia axillaris HOM05D002050 ORTHO05D001949 1.4e-06 57.4 32 87.5
Peaxi162Scf01242g00022 Petunia axillaris HOM05D002050 ORTHO05D001949 1.4e-06 57.4 32 87.5
QL10p057432 Quercus lobata HOM05D002050 ORTHO05D001949 1.4e-06 57.4 32 84.4
QL10p057720 Quercus lobata HOM05D002050 ORTHO05D001949 1.4e-06 57.4 32 84.4
Hund09058 Selenicereus undatus HOM05D002050 ORTHO05D001949 1.4e-06 57.4 32 84.4
Solyc06g007670.4 Solanum lycopersicum HOM05D002050 ORTHO05D001949 1.4e-06 57.4 32 87.5
Sopen06g002570 Solanum pennellii HOM05D002050 ORTHO05D001949 1.4e-06 57.4 32 87.5
Sopen06g034230 Solanum pennellii HOM05D002050 ORTHO05D001949 1.4e-06 57.4 32 87.5
Sopen09g013020 Solanum pennellii HOM05D002050 ORTHO05D001949 1.4e-06 57.4 32 87.5
PGSC0003DMG400020305 Solanum tuberosum HOM05D002050 ORTHO05D001949 1.4e-06 57.4 32 87.5
PGSC0003DMG400020657 Solanum tuberosum HOM05D002050 ORTHO05D001949 1.4e-06 57.4 32 87.5
PGSC0003DMG400027667 Solanum tuberosum HOM05D002050 ORTHO05D001949 1.4e-06 57.4 32 87.5
Cpa.g.sc343.5 Carica papaya HOM05D002050 ORTHO05D001949 1.9e-06 57.0 51 58.8
Ciclev10016107m.g Citrus clementina HOM05D002050 ORTHO05D001949 1.9e-06 57.0 51 60.8
Gohir.D07G201300 Gossypium hirsutum HOM05D002050 ORTHO05D001949 1.9e-06 57.0 51 58.8
Gorai.001G226000 Gossypium raimondii HOM05D002050 ORTHO05D001949 1.9e-06 57.0 51 58.8
HanXRQChr01g0010541 Helianthus annuus HOM05D002050 ORTHO05D001949 1.9e-06 57.0 51 58.8
Lalb_Chr23g0278271 Lupinus albus HOM05D002050 ORTHO05D001949 1.9e-06 57.0 51 60.8
PGR042G0348 Punica granatum HOM05D002050 ORTHO05D001949 1.9e-06 57.0 51 58.8
PGR042G1434 Punica granatum HOM05D002050 ORTHO05D001949 1.9e-06 57.0 51 58.8
TWI12G1351 Tripterygium wilfordii HOM05D002050 ORTHO05D001949 1.9e-06 57.0 51 58.8
TWI36G0763 Tripterygium wilfordii HOM05D002050 ORTHO05D001949 1.9e-06 57.0 51 58.8
TWI36G1093 Tripterygium wilfordii HOM05D002050 ORTHO05D001949 1.9e-06 57.0 51 58.8
TWI63G1350 Tripterygium wilfordii HOM05D002050 ORTHO05D001949 1.9e-06 57.0 51 58.8
Atru.chr6.3494 Acer truncatum HOM05D002050 ORTHO05D001949 2.4e-06 56.6 51 58.8
CANSAT56G3674 Cannabis sativa HOM05D002050 ORTHO05D001949 2.4e-06 56.6 51 58.8
AUR62008052 Chenopodium quinoa HOM05D002050 ORTHO05D001949 2.4e-06 56.6 31 87.1
Dinv18312 Davidia involucrata HOM05D002050 ORTHO05D001949 2.4e-06 56.6 51 58.8
Gohir.A02G008400 Gossypium hirsutum HOM05D002050 ORTHO05D001949 2.4e-06 56.6 51 58.8
Lj1g0022451 Lotus japonicus HOM05D002050 ORTHO05D001949 2.4e-06 56.6 51 58.8
MBI07_g33482_MAGBIO Magnolia biondii HOM05D002050 ORTHO05D001949 2.4e-06 56.6 51 58.8
MD15G1422600 Malus domestica HOM05D002050 ORTHO05D001949 2.4e-06 56.6 51 60.8
Medtr3g118030 Medicago truncatula HOM05D002050 ORTHO05D001949 2.4e-06 56.6 32 84.4
Phvul.001G003200 Phaseolus vulgaris HOM05D002050 ORTHO05D001949 2.4e-06 56.6 51 58.8
Phvul.010G117700 Phaseolus vulgaris HOM05D002050 ORTHO05D001949 2.4e-06 56.6 51 58.8
Phvul.L002181 Phaseolus vulgaris HOM05D002050 ORTHO05D001949 2.4e-06 56.6 51 58.8
Potri.014G197100 Populus trichocarpa HOM05D002050 ORTHO05D001949 2.4e-06 56.6 51 60.8
Hund26311 Selenicereus undatus HOM05D002050 ORTHO05D001949 2.4e-06 56.6 31 87.1
EL10Ac5g10572 Beta vulgaris HOM05D002050 ORTHO05D001949 3.2e-06 56.2 32 81.2
HanXRQChr01g0014021 Helianthus annuus HOM05D002050 ORTHO05D001949 3.2e-06 56.2 32 81.2
HanXRQChr01g0025151 Helianthus annuus HOM05D002050 ORTHO05D001949 3.2e-06 56.2 32 81.2
SGA_v2.0_scaffold110G31186 Striga asiatica HOM05D002050 ORTHO05D001949 3.2e-06 56.2 51 58.8
SGA_v2.0_scaffold77G25320 Striga asiatica HOM05D002050 ORTHO05D001949 3.2e-06 56.2 51 58.8
SGA_v2.0_scaffold95G28684 Striga asiatica HOM05D002050 ORTHO05D001949 3.2e-06 56.2 51 58.8
VMungo0331G0884 Vigna mungo HOM05D002050 ORTHO05D001949 3.2e-06 56.2 50 60.0
MSTRG.17951 Avicennia marina HOM05D002050 ORTHO05D001949 4.1e-06 55.8 51 56.9
Duzib151G1117 Durio zibethinus HOM05D002050 ORTHO05D001949 4.1e-06 55.8 51 58.8
Lj3g0002302 Lotus japonicus HOM05D002050 ORTHO05D001949 4.1e-06 55.8 51 56.9
Lalb_Chr04g0254591 Lupinus albus HOM05D002050 ORTHO05D001949 4.1e-06 55.8 51 58.8
Lalb_Chr10g0100181 Lupinus albus HOM05D002050 ORTHO05D001949 4.1e-06 55.8 51 58.8
Manes.05G131600 Manihot esculenta HOM05D002050 ORTHO05D001949 4.1e-06 55.8 51 58.8
Manes.05G131700 Manihot esculenta HOM05D002050 ORTHO05D001949 4.1e-06 55.8 51 58.8
Nn1g03044 Nelumbo nucifera HOM05D002050 ORTHO05D001949 4.1e-06 55.8 49 61.2
THA.LOC104808820 Tarenaya hassleriana HOM05D002050 ORTHO05D001949 4.1e-06 55.8 51 56.9
TPR.G38473 Trifolium pratense HOM05D002050 ORTHO05D001949 4.1e-06 55.8 51 56.9
HPP92_011687 Vanilla planifolia HOM05D002050 ORTHO05D001949 4.1e-06 55.8 30 86.7
Ah.11g050700 Amaranthus hybridus HOM05D002050 ORTHO05D001949 5.4e-06 55.5 32 81.2
CSS0047337 Camellia sinensis var. sinensis HOM05D002050 ORTHO05D001949 5.4e-06 55.5 51 56.9
ClCG08G010160 Citrullus lanatus HOM05D002050 ORTHO05D001949 5.4e-06 55.5 51 58.8
ClCG11G013460 Citrullus lanatus HOM05D002050 ORTHO05D001949 5.4e-06 55.5 51 58.8
MELO3C011847.2 Cucumis melo HOM05D002050 ORTHO05D001949 5.4e-06 55.5 51 58.8
CsaV3_5G030080 Cucumis sativus L. HOM05D002050 ORTHO05D001949 5.4e-06 55.5 51 58.8
CsaV3_6G032340 Cucumis sativus L. HOM05D002050 ORTHO05D001949 5.4e-06 55.5 51 58.8
Lsat_1_v5_gn_5_176220 Lactuca sativa HOM05D002050 ORTHO05D001949 5.4e-06 55.5 51 56.9
Nitab4.5_0007648g0030 Nicotiana tabacum HOM05D002050 ORTHO05D001949 5.4e-06 55.5 31 87.1
Peaxi162Scf00995g00323 Petunia axillaris HOM05D002050 ORTHO05D001949 5.4e-06 55.5 31 87.1
Psat0s709g0080 Pisum sativum HOM05D002050 ORTHO05D001949 5.4e-06 55.5 51 56.9
PGR042G1937 Punica granatum HOM05D002050 ORTHO05D001949 5.4e-06 55.5 51 56.9
Sed0010192 Sechium edule HOM05D002050 ORTHO05D001949 5.4e-06 55.5 51 58.8
Sed0026889 Sechium edule HOM05D002050 ORTHO05D001949 5.4e-06 55.5 51 58.8
Solyc06g082870.4 Solanum lycopersicum HOM05D002050 ORTHO05D001949 5.4e-06 55.5 31 87.1
unitig_62.g23639 Utricularia gibba HOM05D002050 ORTHO05D001949 5.4e-06 55.5 51 58.8
GSVIVG01038188001 Vitis vinifera HOM05D002050 ORTHO05D001949 5.4e-06 55.5 51 56.9
Lj1A106G22 Lonicera japonica HOM05D002050 ORTHO05D001949 7.0e-06 55.1 51 56.9
Lj2C1109T14 Lonicera japonica HOM05D002050 ORTHO05D001949 7.0e-06 55.1 51 56.9
COL.COLO4_08071 Corchorus olitorius HOM05D002050 ORTHO05D001949 9.2e-06 54.7 51 56.9
Duzib133G1358 Durio zibethinus HOM05D002050 ORTHO05D001949 9.2e-06 54.7 32 78.1
Duzib211G0523 Durio zibethinus HOM05D002050 ORTHO05D001949 9.2e-06 54.7 32 78.1
Eucgr.L00023 Eucalyptus grandis HOM05D002050 ORTHO05D001949 9.2e-06 54.7 51 58.8
Sabra13G0107400 Salix brachista HOM05D002050 ORTHO05D001949 9.2e-06 54.7 51 60.8
Sc13g0007360 Simmondsia chinensis HOM05D002050 ORTHO05D001949 9.2e-06 54.7 32 78.1
THA.LOC104815387 Tarenaya hassleriana HOM05D002050 ORTHO05D001949 9.2e-06 54.7 51 54.9
TAR633G0003 Trochodendron aralioides HOM05D002050 ORTHO05D001949 9.2e-06 54.7 51 58.8
unitig_52.g17418 Utricularia gibba HOM05D002050 ORTHO05D001949 9.2e-06 54.7 113 37.2


User provided reference genes

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