Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g23172 Fragaria vesca HOM05D008321 ORTHO05D003768 5.4e-150 534.3 261 100.0
FvH4_3g32731 Fragaria vesca HOM05D008321 ORTHO05D003768 2.5e-99 365.9 199 93.0
FvH4_4g16173 Fragaria vesca HOM05D008321 ORTHO05D003768 7.9e-93 344.4 219 81.7
FAN18G0245 Fragaria x ananassa HOM05D008321 ORTHO05D003768 1.1e-62 244.2 151 84.1
FvH4_2g07142 Fragaria vesca HOM05D008321 ORTHO05D003768 1.9e-62 243.4 216 61.6
FvH4_6g17382 Fragaria vesca HOM05D008321 ORTHO05D003768 4.2e-62 242.3 216 61.1
FAN11G0973 Fragaria x ananassa HOM05D008321 ORTHO05D003768 2.6e-59 233.0 158 76.6
FvH4_2g08144 Fragaria vesca HOM05D008321 ORTHO05D003768 3.1e-57 226.1 191 63.9
FvH4_5g18843 Fragaria vesca HOM05D008321 ORTHO05D003768 1.0e-55 221.1 231 51.9
FAN18G4094 Fragaria x ananassa HOM05D008321 ORTHO05D003768 2.7e-53 213.0 215 54.0
RcHm_v2.0_Chr6g0269851 Rosa chinensis HOM05D008321 ORTHO05D003768 8.3e-50 201.4 213 49.3
FvH4_4g10363 Fragaria vesca HOM05D008321 ORTHO05D003768 1.8e-49 200.3 113 92.0
FAN21G1044 Fragaria x ananassa HOM05D008321 ORTHO05D003768 2.7e-48 196.4 200 56.5
FAN19G2766 Fragaria x ananassa HOM05D008321 ORTHO05D003768 1.1e-46 191.0 220 48.2
FvH4_4g03221 Fragaria vesca HOM05D000014 ORTHO05D000016 1.6e-45 187.2 193 53.4
FvH4_3g21852 Fragaria vesca HOM05D008321 ORTHO05D003768 4.9e-42 175.6 115 77.4
FvH4_1g29233 Fragaria vesca HOM05D008321 ORTHO05D003768 3.5e-40 169.5 191 51.3
FAN16G3103 Fragaria x ananassa HOM05D008321 ORTHO05D003768 5.6e-38 162.2 113 74.3
FAN10G2328 Fragaria x ananassa HOM05D008321 ORTHO05D003768 2.0e-35 153.7 111 74.8
FvH4_4g06631 Fragaria vesca HOM05D008321 ORTHO05D003768 4.6e-32 142.5 258 36.4
FvH4_4g10253 Fragaria vesca HOM05D000107 ORTHO05D000062 3.3e-30 136.3 66 93.9
FAN24G2086 Fragaria x ananassa HOM05D008321 ORTHO05D003768 1.3e-26 124.4 82 73.2
FAN03G1875 Fragaria x ananassa HOM05D008321 ORTHO05D003768 1.4e-25 120.9 144 47.9
FAN18G1459 Fragaria x ananassa HOM05D008321 ORTHO05D003768 1.6e-24 117.5 77 70.1
FAN23G0987 Fragaria x ananassa HOM05D008321 ORTHO05D003768 3.5e-24 116.3 84 64.3
FvH4_2g07144 Fragaria vesca HOM05D000107 ORTHO05D000062 1.9e-22 110.5 66 75.8
FvH4_1g29232 Fragaria vesca HOM05D000107 ORTHO05D000062 5.6e-22 109.0 147 44.9
FAN15G1405 Fragaria x ananassa HOM05D008321 ORTHO05D003768 3.6e-21 106.3 85 57.6
RcHm_v2.0_Chr0c28g0501051 Rosa chinensis HOM05D008321 ORTHO05D003768 1.8e-20 104.0 89 55.1
FvH4_6g20172 Fragaria vesca HOM05D008321 ORTHO05D003768 4.0e-20 102.8 119 46.2
FAN07G1302 Fragaria x ananassa HOM05D008321 ORTHO05D003768 3.4e-19 99.8 85 57.6
FvH4_1g29373 Fragaria vesca HOM05D008321 ORTHO05D003768 5.8e-19 99.0 157 37.6
FAN28G2081 Fragaria x ananassa HOM05D008321 ORTHO05D003768 1.3e-18 97.8 59 76.3
FvH4_4g17212 Fragaria vesca HOM05D008321 ORTHO05D003768 2.2e-18 97.1 151 33.8
FAN12G0755 Fragaria x ananassa HOM05D008321 ORTHO05D003768 4.9e-18 95.9 147 34.0
FAN19G0969 Fragaria x ananassa HOM05D008321 ORTHO05D003768 1.1e-17 94.7 151 33.8
CSS0040185 Camellia sinensis var. sinensis HOM05D007314 ORTHO05D003768 7.8e-16 88.6 196 34.7
Atru.chr7.467 Acer truncatum HOM05D000107 ORTHO05D000062 8.6e-15 85.1 200 32.0
FvH4_4g15580 Fragaria vesca HOM05D003127 ORTHO05D003768 1.1e-14 84.7 166 34.9
FAN22G0652 Fragaria x ananassa HOM05D008321 ORTHO05D003768 7.3e-14 82.0 166 36.1
RcHm_v2.0_Chr3g0458231 Rosa chinensis HOM05D007314 ORTHO05D003768 1.6e-13 80.9 193 30.6
CANSAT35G0660 Cannabis sativa HOM05D007314 ORTHO05D003768 2.1e-13 80.5 196 29.1
CSS0033678 Camellia sinensis var. sinensis HOM05D007314 ORTHO05D003768 1.4e-12 77.8 205 30.2
CSS0045228 Camellia sinensis var. sinensis HOM05D007314 ORTHO05D003768 1.4e-12 77.8 201 31.3
MELO3C028846.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.8e-12 77.4 211 28.9
FAN16G0148 Fragaria x ananassa HOM05D008321 ORTHO05D003768 3.1e-12 76.6 49 71.4
ClCG07G007700 Citrullus lanatus HOM05D007314 ORTHO05D003768 6.8e-12 75.5 187 28.9
MELO3C027594.2 Cucumis melo HOM05D007314 ORTHO05D003768 6.8e-12 75.5 211 29.9
MELO3C035305.2 Cucumis melo HOM05D007314 ORTHO05D003768 6.8e-12 75.5 204 28.9
RcHm_v2.0_Chr3g0460621 Rosa chinensis HOM05D007314 ORTHO05D003768 1.2e-11 74.7 184 31.0
Atru.chr4.2623 Acer truncatum HOM05D008321 ORTHO05D003768 1.5e-11 74.3 196 27.6
CANSAT25G2929 Cannabis sativa HOM05D007314 ORTHO05D003768 3.4e-11 73.2 194 28.9
RcHm_v2.0_Chr3g0458241 Rosa chinensis HOM05D000107 ORTHO05D000062 3.4e-11 73.2 49 61.2
MELO3C030512.2 Cucumis melo HOM05D007314 ORTHO05D003768 5.8e-11 72.4 181 28.7
MELO3C008679.2 Cucumis melo HOM05D007314 ORTHO05D003768 7.6e-11 72.0 187 32.1
Atru.chr2.2530 Acer truncatum HOM05D001899 ORTHO05D001858 1.3e-10 71.2 102 37.3
FAN07G1237 Fragaria x ananassa HOM05D008321 ORTHO05D003768 1.3e-10 71.2 37 89.2
PSO675G7499 Papaver somniferum HOM05D008526 ORTHO05D010380 3.8e-10 69.7 308 23.7
MELO3C028271.2 Cucumis melo HOM05D007314 ORTHO05D003768 8.4e-10 68.6 169 30.8
Sed0011740 Sechium edule HOM05D007314 ORTHO05D003768 8.4e-10 68.6 188 31.4
Oeu041304.1 Olea europaea HOM05D009091 ORTHO05D003768 1.4e-09 67.8 143 31.5
Atru.chr5.1952 Acer truncatum HOM05D000107 ORTHO05D000062 1.9e-09 67.4 51 56.9
MELO3C031887.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.9e-09 67.4 176 29.0
FvH4_4g10040 Fragaria vesca HOM05D009091 ORTHO05D003768 1.9e-09 67.4 236 26.7
FvH4_6g35541 Fragaria vesca HOM05D009091 ORTHO05D003768 1.9e-09 67.4 256 27.0
MELO3C029981.2 Cucumis melo HOM05D007314 ORTHO05D003768 2.4e-09 67.0 70 42.9
FAN08G3642 Fragaria x ananassa HOM05D008321 ORTHO05D003768 4.1e-09 66.2 52 51.9
ClCG05G014410 Citrullus lanatus HOM05D007314 ORTHO05D003768 5.4e-09 65.9 70 41.4
MELO3C030644.2 Cucumis melo HOM05D007314 ORTHO05D003768 7.1e-09 65.5 160 26.9
MBI05_g39717_MAGBIO Magnolia biondii HOM05D007906 ORTHO05D004199 9.2e-09 65.1 239 25.5
MELO3C032996.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.2e-08 64.7 69 46.4
CsaV3_3G006830 Cucumis sativus L. HOM05D007314 ORTHO05D003768 1.2e-08 64.7 183 30.1
RcHm_v2.0_Chr2g0134701 Rosa chinensis HOM05D009091 ORTHO05D003768 1.2e-08 64.7 229 27.5
Oeu040990.1 Olea europaea HOM05D000700 ORTHO05D000397 1.6e-08 64.3 143 30.1
Rhsim02G0050400 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.6e-08 64.3 49 57.1
Rhsim03G0123300 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.6e-08 64.3 49 57.1
MELO3C028434.2 Cucumis melo HOM05D007314 ORTHO05D003768 2.1e-08 63.9 70 40.0
FAN13G1958 Fragaria x ananassa HOM05D008321 ORTHO05D003768 2.1e-08 63.9 99 44.4
PSO339G1567 Papaver somniferum HOM05D000107 ORTHO05D000062 2.1e-08 63.9 48 54.2
MELO3C029040.2 Cucumis melo HOM05D007314 ORTHO05D003768 2.7e-08 63.5 66 42.4
FAN01G0361 Fragaria x ananassa HOM05D009091 ORTHO05D004377 2.7e-08 63.5 257 25.7
MBI15_g36793_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 2.7e-08 63.5 236 27.1
PSO170G6916 Papaver somniferum HOM05D000107 ORTHO05D000062 2.7e-08 63.5 48 54.2
PSO832G1531 Papaver somniferum HOM05D000107 ORTHO05D000062 2.7e-08 63.5 48 54.2
ClCG07G007690 Citrullus lanatus HOM05D000107 ORTHO05D000062 3.5e-08 63.2 49 53.1
MBI02_g35833_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 4.6e-08 62.8 225 24.0
MBI15_g16946_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 4.6e-08 62.8 239 26.4
FvH4_4g15323 Fragaria vesca HOM05D008321 ORTHO05D010380 6.0e-08 62.4 197 27.4
PSO541G0665 Papaver somniferum HOM05D000107 ORTHO05D000062 7.8e-08 62.0 48 52.1
RcHm_v2.0_Chr5g0064801 Rosa chinensis HOM05D007314 ORTHO05D003768 7.8e-08 62.0 70 41.4
MELO3C001336.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.0e-07 61.6 70 37.1
MBI01_g25649_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.0e-07 61.6 224 25.0
PSO675G7728 Papaver somniferum HOM05D000107 ORTHO05D000062 1.0e-07 61.6 48 52.1
RcHm_v2.0_Chr3g0492801 Rosa chinensis HOM05D007314 ORTHO05D003768 1.3e-07 61.2 70 41.4
TPR.G36035 Trifolium pratense HOM05D000107 ORTHO05D000062 1.3e-07 61.2 48 58.3
Atru.chr13.1908 Acer truncatum HOM05D000107 ORTHO05D000062 1.7e-07 60.8 48 54.2
Oeu047507.2 Olea europaea HOM05D007314 ORTHO05D003768 1.7e-07 60.8 142 29.6
CSS0049472 Camellia sinensis var. sinensis HOM05D008321 ORTHO05D003768 3.0e-07 60.1 158 29.7
MELO3C030144.2 Cucumis melo HOM05D007314 ORTHO05D003768 3.0e-07 60.1 70 41.4
FvH4_4g16175 Fragaria vesca HOM05D000107 ORTHO05D000062 3.0e-07 60.1 30 96.7
CANSAT25G1827 Cannabis sativa HOM05D000107 ORTHO05D000062 3.9e-07 59.7 48 54.2
PSO675G8758 Papaver somniferum HOM05D000107 ORTHO05D000062 3.9e-07 59.7 75 38.7
vmacro21586 Vaccinium macrocarpon HOM05D008488 ORTHO05D000385 5.1e-07 59.3 223 26.9
vmacro21926 Vaccinium macrocarpon HOM05D008488 ORTHO05D000385 5.1e-07 59.3 223 26.9
vmacro23420 Vaccinium macrocarpon HOM05D008488 ORTHO05D000385 5.1e-07 59.3 223 26.9
AUR62002657 Chenopodium quinoa HOM05D000107 ORTHO05D000062 6.6e-07 58.9 48 47.9
MELO3C029411.2 Cucumis melo HOM05D007314 ORTHO05D003768 6.6e-07 58.9 109 34.9
MBI16_g11018_MAGBIO Magnolia biondii HOM05D003464 ORTHO05D003170 6.6e-07 58.9 185 23.8
MBI18_g39897_MAGBIO Magnolia biondii HOM05D007906 ORTHO05D004199 6.6e-07 58.9 201 25.4
RhsimUnG0146400 Rhododendron simsii HOM05D000107 ORTHO05D000062 6.6e-07 58.9 48 56.2
CSS0040510 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 8.6e-07 58.5 178 25.3
PSO063G1732 Papaver somniferum HOM05D000107 ORTHO05D000062 8.6e-07 58.5 75 37.3
CSS0018258 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 1.1e-06 58.2 48 54.2
HanXRQChr03g0071501 Helianthus annuus HOM05D008488 ORTHO05D000385 1.1e-06 58.2 183 24.0
PSO210G7480 Papaver somniferum HOM05D000107 ORTHO05D000062 1.1e-06 58.2 75 37.3
PSO339G2651 Papaver somniferum HOM05D000107 ORTHO05D000062 1.1e-06 58.2 75 37.3
PSO421G0292 Papaver somniferum HOM05D000107 ORTHO05D000062 1.1e-06 58.2 75 37.3
PSO541G4511 Papaver somniferum HOM05D000107 ORTHO05D000062 1.1e-06 58.2 75 37.3
PSO782G4972 Papaver somniferum HOM05D000107 ORTHO05D000062 1.1e-06 58.2 75 37.3
HanXRQChr13g0403301 Helianthus annuus HOM05D000107 ORTHO05D000062 1.5e-06 57.8 48 50.0
PSO104G0066 Papaver somniferum HOM05D000107 ORTHO05D000062 1.5e-06 57.8 48 50.0
RcHm_v2.0_Chr4g0444771 Rosa chinensis HOM05D007314 ORTHO05D003768 1.5e-06 57.8 70 40.0
HanXRQChr05g0158791 Helianthus annuus HOM05D000107 ORTHO05D000062 1.9e-06 57.4 48 50.0
HanXRQChr14g0434671 Helianthus annuus HOM05D008488 ORTHO05D000385 1.9e-06 57.4 183 24.0
PSO017G3036 Papaver somniferum HOM05D000107 ORTHO05D000062 1.9e-06 57.4 72 37.5
PSO675G0159 Papaver somniferum HOM05D000107 ORTHO05D000062 1.9e-06 57.4 72 37.5
AUR62014303 Chenopodium quinoa HOM05D001385 ORTHO05D008760 2.5e-06 57.0 58 43.1
CANSAT25G1818 Cannabis sativa HOM05D007314 ORTHO05D003768 3.3e-06 56.6 72 40.3
MELO3C032718.2 Cucumis melo HOM05D007314 ORTHO05D003768 3.3e-06 56.6 76 35.5
Oeu048290.1 Olea europaea HOM05D009091 ORTHO05D003768 3.3e-06 56.6 59 42.4
PSO170G2938 Papaver somniferum HOM05D000107 ORTHO05D000062 3.3e-06 56.6 75 36.0
CSS0025982 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 4.3e-06 56.2 47 53.2
MELO3C033672.2 Cucumis melo HOM05D007314 ORTHO05D003768 4.3e-06 56.2 156 28.2
MD03G1146400 Malus domestica HOM05D000107 ORTHO05D000062 4.3e-06 56.2 61 44.3
PSO173G0183 Papaver somniferum HOM05D000107 ORTHO05D000062 4.3e-06 56.2 56 44.6
QL10p007184 Quercus lobata HOM05D000107 ORTHO05D000062 4.3e-06 56.2 58 50.0
Rhsim01G0163400 Rhododendron simsii HOM05D000107 ORTHO05D000062 4.3e-06 56.2 48 52.1
vmacro22655 Vaccinium macrocarpon HOM05D008488 ORTHO05D000385 4.3e-06 56.2 200 26.0
Atru.chr6.2082 Acer truncatum HOM05D000107 ORTHO05D000062 5.6e-06 55.8 48 52.1
AUR62039442 Chenopodium quinoa HOM05D000107 ORTHO05D000062 5.6e-06 55.8 49 51.0
CSS0016301 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 7.3e-06 55.5 186 25.3
Rhsim01G0043900 Rhododendron simsii HOM05D000107 ORTHO05D000062 7.3e-06 55.5 48 52.1
Sed0009392 Sechium edule HOM05D007314 ORTHO05D003768 7.3e-06 55.5 172 25.6
TWI15G0534 Tripterygium wilfordii HOM05D000107 ORTHO05D000062 7.3e-06 55.5 56 46.4
TWI60G0582 Tripterygium wilfordii HOM05D000107 ORTHO05D000062 7.3e-06 55.5 48 52.1
TWI73G0549 Tripterygium wilfordii HOM05D000107 ORTHO05D000062 7.3e-06 55.5 48 52.1
Atru.chr6.157 Acer truncatum HOM05D000107 ORTHO05D000062 9.6e-06 55.1 48 52.1
CSS0030327 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 9.6e-06 55.1 178 25.8
CANSAT01G1098 Cannabis sativa HOM05D000107 ORTHO05D000062 9.6e-06 55.1 48 52.1
MELO3C029576.2 Cucumis melo HOM05D007314 ORTHO05D003768 9.6e-06 55.1 166 29.5
FAN27G1268 Fragaria x ananassa HOM05D008321 ORTHO05D003768 9.6e-06 55.1 39 69.2
QL12p013571 Quercus lobata HOM05D000107 ORTHO05D000062 9.6e-06 55.1 48 52.1


User provided reference genes

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