Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g23080 Fragaria vesca HOM05D007538 ORTHO05D009464 1.6e-169 599.4 309 100.0
FAN18G3589 Fragaria x ananassa HOM05D007538 ORTHO05D009464 1.6e-161 572.8 305 97.0
FAN08G1825 Fragaria x ananassa HOM05D007538 ORTHO05D009464 8.0e-161 570.5 319 93.7
FAN13G1023 Fragaria x ananassa HOM05D007538 ORTHO05D009464 5.2e-160 567.8 319 93.4
FAN04G2865 Fragaria x ananassa HOM05D007538 ORTHO05D009464 9.5e-146 520.4 308 89.3
FAN18G1171 Fragaria x ananassa HOM05D007538 ORTHO05D009464 5.6e-138 494.6 296 89.2
RcHm_v2.0_Chr7g0211801 Rosa chinensis HOM05D007538 ORTHO05D009464 1.2e-127 460.3 321 78.5
MD06G1026300 Malus domestica HOM05D007538 ORTHO05D009464 2.5e-93 346.3 319 60.5
Prupe.5G028100 Prunus persica HOM05D007538 ORTHO05D009464 2.5e-77 293.1 261 62.1
Cfa012515 Carpinus fangiana HOM05D007538 ORTHO05D009464 9.1e-72 274.6 324 52.8
QL12p001632 Quercus lobata HOM05D007538 ORTHO05D009464 1.6e-71 273.9 322 52.5
Dinv25258 Davidia involucrata HOM05D007538 ORTHO05D009464 5.9e-71 271.9 321 50.5
CiPaw.12G068100 Carya illinoinensis HOM05D007538 ORTHO05D009464 8.8e-67 258.1 319 49.8
Duzib205G0978 Durio zibethinus HOM05D007538 ORTHO05D009464 1.3e-62 244.2 319 48.0
Haze_08148 Corylus avellana HOM05D007538 ORTHO05D009464 1.2e-60 237.7 311 49.8
Thecc.03G310000 Theobroma cacao HOM05D007538 ORTHO05D009464 4.7e-60 235.7 315 47.3
CSS0038946 Camellia sinensis var. sinensis HOM05D007538 ORTHO05D009464 8.0e-60 235.0 324 47.8
CSS0028782 Camellia sinensis var. sinensis HOM05D007538 ORTHO05D009464 1.4e-59 234.2 324 47.8
GSVIVG01013092001 Vitis vinifera HOM05D007538 ORTHO05D009464 1.5e-58 230.7 323 46.4
CANSAT21G1184 Cannabis sativa HOM05D007538 ORTHO05D009464 2.6e-58 229.9 317 45.4
Gorai.008G224100 Gossypium raimondii HOM05D007538 ORTHO05D009464 4.4e-58 229.2 318 45.9
Gohir.D12G208500 Gossypium hirsutum HOM05D007538 ORTHO05D009464 7.5e-58 228.4 318 45.6
TWI60G0985 Tripterygium wilfordii HOM05D007538 ORTHO05D009464 1.7e-57 227.3 319 45.1
TAR629G0149 Trochodendron aralioides HOM05D007538 ORTHO05D009464 4.8e-57 225.7 341 46.3
Ciclev10001787m.g Citrus clementina HOM05D007538 ORTHO05D009464 1.6e-55 220.7 343 44.3
Hma1.2p1_1569F.1_g291220 Hydrangea macrophylla HOM05D007538 ORTHO05D009464 1.0e-54 218.0 318 46.5
Lalb_Chr05g0215781 Lupinus albus HOM05D007538 ORTHO05D009464 1.5e-53 214.2 322 42.2
Potri.001G137000 Populus trichocarpa HOM05D007538 ORTHO05D009464 4.2e-53 212.6 323 43.3
Lj2g0003780 Lotus japonicus HOM05D007538 ORTHO05D009464 1.0e-51 208.0 314 44.3
COL.COLO4_16943 Corchorus olitorius HOM05D007538 ORTHO05D009464 1.4e-51 207.6 311 43.7
Gohir.A12G206200 Gossypium hirsutum HOM05D007538 ORTHO05D009464 2.3e-51 206.8 314 44.6
Medtr5g029310 Medicago truncatula HOM05D007538 ORTHO05D009464 1.7e-49 200.7 308 41.9
TPR.G19431 Trifolium pratense HOM05D007538 ORTHO05D009464 1.7e-49 200.7 314 41.1
Glyma.09G207600 Glycine max HOM05D007538 ORTHO05D009464 2.8e-49 199.9 310 41.9
Ca_25180_v3 Cicer arietinum L. HOM05D007538 ORTHO05D009464 6.3e-49 198.7 306 42.2
TWI15G0751 Tripterygium wilfordii HOM05D007538 ORTHO05D009464 3.1e-48 196.4 288 45.1
arahy.Tifrunner.gnm1.ann1.IVG2V7 Arachis hypogaea HOM05D007538 ORTHO05D009464 5.4e-48 195.7 329 39.2
arahy.Tifrunner.gnm1.ann1.UGGX0P Arachis hypogaea HOM05D007538 ORTHO05D009464 5.4e-48 195.7 329 39.2
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 1.0e-46 191.4 258 48.8
Lalb_Chr16g0381091 Lupinus albus HOM05D007538 ORTHO05D009464 2.9e-46 189.9 319 41.4
CANSAT21G1947 Cannabis sativa HOM05D007538 ORTHO05D009464 4.3e-45 186.0 293 42.3
Phvul.002G136900 Phaseolus vulgaris HOM05D007538 ORTHO05D009464 7.3e-45 185.3 318 39.6
Aqoxy3G02177 Aquilegia oxysepala HOM05D007538 ORTHO05D009464 1.2e-44 184.5 325 40.9
Sabra01G0106100 Salix brachista HOM05D007538 ORTHO05D009464 3.6e-44 183.0 315 40.3
vmacro00280 Vaccinium macrocarpon HOM05D007538 ORTHO05D009464 3.0e-43 179.9 306 42.2
PGR042G1771 Punica granatum HOM05D007538 ORTHO05D009464 4.0e-43 179.5 319 40.8
Actinidia01319 Actinidia chinensis HOM05D007538 ORTHO05D009464 6.8e-43 178.7 277 44.0
DCAR_008224 Daucus carota HOM05D007538 ORTHO05D009464 6.8e-43 178.7 359 37.3
Manes.17G017000 Manihot esculenta HOM05D007538 ORTHO05D009464 6.8e-43 178.7 349 38.1
Nn1g00207 Nelumbo nucifera HOM05D007538 ORTHO05D009464 2.0e-42 177.2 318 40.9
VMungo1215G0128 Vigna mungo HOM05D007538 ORTHO05D009464 2.6e-42 176.8 318 39.3
Eucgr.E00229 Eucalyptus grandis HOM05D007538 ORTHO05D009464 9.8e-42 174.9 324 41.7
Atru.chr6.1522 Acer truncatum HOM05D007538 ORTHO05D009464 2.4e-40 170.2 274 42.0
Psat0s3175g0080 Pisum sativum HOM05D007538 ORTHO05D009464 2.4e-40 170.2 294 39.8
Glyma.01G014500 Glycine max HOM05D007538 ORTHO05D009464 5.9e-39 165.6 287 39.4
Rhsim11G0021400 Rhododendron simsii HOM05D007538 ORTHO05D009464 2.3e-38 163.7 324 40.1
Hund14370 Selenicereus undatus HOM05D007538 ORTHO05D009464 6.6e-38 162.2 329 38.9
AUR62007351 Chenopodium quinoa HOM05D007538 ORTHO05D009464 1.1e-37 161.4 321 36.8
AUR62018643 Chenopodium quinoa HOM05D007538 ORTHO05D009464 1.5e-37 161.0 321 36.4
PSO063G5413 Papaver somniferum HOM05D007538 ORTHO05D009464 5.6e-37 159.1 323 37.5
ClCG10G001280 Citrullus lanatus HOM05D007538 ORTHO05D009464 1.8e-35 154.1 318 38.1
ECA240G2786 Erigeron canadensis HOM05D007538 ORTHO05D009464 9.8e-34 148.3 315 37.8
Oeu027088.1 Olea europaea HOM05D007538 ORTHO05D009464 1.7e-33 147.5 355 36.9
PGSC0003DMG400014793 Solanum tuberosum HOM05D007538 ORTHO05D009464 2.4e-32 143.7 323 38.1
Solyc08g076430.3 Solanum lycopersicum HOM05D007538 ORTHO05D009464 9.2e-32 141.7 330 40.0
Sopen08g025010 Solanum pennellii HOM05D007538 ORTHO05D009464 2.7e-31 140.2 330 40.0
Cc08_g03440 Coffea canephora HOM05D007538 ORTHO05D009464 3.0e-30 136.7 320 35.3
EL10Ac5g12015 Beta vulgaris HOM05D007538 ORTHO05D009464 6.6e-30 135.6 308 35.4
Peaxi162Scf00170g00623 Petunia axillaris HOM05D007538 ORTHO05D009464 1.5e-29 134.4 316 35.1
CsaV3_3G001350 Cucumis sativus L. HOM05D007538 ORTHO05D009464 3.3e-29 133.3 316 34.5
HanXRQChr03g0083271 Helianthus annuus HOM05D007538 ORTHO05D009464 2.8e-28 130.2 304 36.8
Nitab4.5_0000529g0180 Nicotiana tabacum HOM05D007538 ORTHO05D009464 4.7e-28 129.4 312 35.9
Ah.12g055490 Amaranthus hybridus HOM05D007538 ORTHO05D009464 8.1e-28 128.6 213 42.3
Sed0002033 Sechium edule HOM05D007538 ORTHO05D009464 4.0e-27 126.3 312 33.7
MELO3C013823.2 Cucumis melo HOM05D007538 ORTHO05D009464 5.2e-27 125.9 312 35.9
Nitab4.5_0000809g0070 Nicotiana tabacum HOM05D007538 ORTHO05D009464 1.2e-26 124.8 313 35.5
Sc01g0007170 Simmondsia chinensis HOM05D007538 ORTHO05D009464 1.2e-26 124.8 215 39.1
Os02g0697200 Oryza sativa ssp. japonica HOM05D007538 ORTHO05D009464 9.8e-26 121.7 356 32.0
Migut.E00746 Erythranthe guttata HOM05D007538 ORTHO05D009464 5.4e-24 115.9 332 33.7
MSTRG.13737 Avicennia marina HOM05D007538 ORTHO05D009464 1.6e-23 114.4 351 31.9
Cpa.g.sc208.8 Carica papaya HOM05D007538 ORTHO05D009464 2.1e-23 114.0 237 39.7
SalBow6G3044 Salvia bowleyana HOM05D007538 ORTHO05D009464 7.8e-23 112.1 342 30.4
Lsat_1_v5_gn_6_80020 Lactuca sativa HOM05D007538 ORTHO05D009464 3.0e-22 110.2 294 34.7
Zm00001eb187890 Zea mays HOM05D007538 ORTHO05D009464 1.6e-20 104.4 336 28.6
Psat0s1646g0240 Pisum sativum HOM05D007538 ORTHO05D009464 1.2e-15 88.2 156 38.5
SGA_v2.0_scaffold36G14297 Striga asiatica HOM05D006137 ORTHO05D007697 3.5e-15 86.7 188 37.8
MBI04_g44375_MAGBIO Magnolia biondii HOM05D007538 ORTHO05D009464 8.6e-14 82.0 162 38.9
HPP92_020896 Vanilla planifolia HOM05D007538 ORTHO05D009464 1.1e-13 81.6 321 29.0
unitig_22.g5510 Utricularia gibba HOM05D007538 ORTHO05D009464 1.5e-13 81.3 334 29.0
SEGI_18774 Sequoiadendron giganteum HOM05D007538 ORTHO05D009464 3.3e-13 80.1 320 25.6
CAN.G1987.3 Capsicum annuum HOM05D007538 ORTHO05D009464 2.8e-12 77.0 205 35.6
Zm00001eb251400 Zea mays HOM05D007538 ORTHO05D009464 6.2e-12 75.9 291 29.2
MBI04_g32200_MAGBIO Magnolia biondii HOM05D007538 ORTHO05D009464 8.9e-11 72.0 89 46.1
Aqoxy1G00983 Aquilegia oxysepala HOM05D007538 ORTHO05D009464 3.5e-07 60.1 176 33.5


User provided reference genes

Program Settings