Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 7.6e-115 417.2 207 100.0
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 2.4e-108 395.6 207 96.6
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.5e-107 392.9 207 96.1
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 9.9e-107 390.2 207 95.2
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 3.8e-106 388.3 207 94.2
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 5.5e-105 384.4 207 93.7
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 1.1e-92 343.6 208 84.6
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 6.3e-69 264.6 208 67.8
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 2.6e-67 259.2 208 67.3
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 5.9e-67 258.1 205 65.4
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 1.7e-61 240.0 207 61.4
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 2.2e-61 239.6 213 61.5
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 2.8e-61 239.2 207 62.8
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 4.8e-61 238.4 209 63.2
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.1e-60 237.3 207 60.9
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 1.1e-60 237.3 214 63.1
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.8e-60 236.5 207 60.4
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 2.4e-60 236.1 208 60.6
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 9.1e-60 234.2 211 64.0
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 9.1e-60 234.2 205 61.5
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 3.5e-59 232.3 208 61.5
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 7.7e-59 231.1 209 59.8
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 3.8e-58 228.8 205 60.0
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 6.5e-58 228.0 213 58.7
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 1.9e-57 226.5 205 59.5
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 7.2e-57 224.6 209 58.4
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 9.4e-57 224.2 212 59.0
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 2.7e-56 222.6 210 57.6
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 4.7e-56 221.9 194 61.3
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 6.1e-56 221.5 212 59.0
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 6.1e-56 221.5 211 57.8
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 6.1e-56 221.5 205 58.0
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 6.1e-56 221.5 209 58.4
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 1.0e-55 220.7 212 56.1
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.4e-55 220.3 213 59.2
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 2.3e-55 219.5 209 58.9
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 8.8e-55 217.6 212 58.0
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 5.7e-54 214.9 208 56.2
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 2.2e-53 213.0 208 55.3
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.2e-53 213.0 207 58.9
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 2.8e-53 212.6 212 56.6
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 6.3e-53 211.5 208 57.2
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 8.3e-53 211.1 209 55.0
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 1.1e-52 210.7 209 56.0
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 2.4e-52 209.5 217 56.7
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 3.1e-52 209.1 211 55.9
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 3.1e-52 209.1 211 59.7
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 9.1e-52 207.6 207 56.0
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 9.1e-52 207.6 207 56.0
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 9.1e-52 207.6 211 57.8
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 1.6e-51 206.8 209 56.5
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 1.6e-51 206.8 209 56.5
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 2.0e-51 206.5 212 54.7
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 2.0e-51 206.5 207 54.6
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 3.5e-51 205.7 212 56.6
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 3.5e-51 205.7 203 55.2
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 4.5e-51 205.3 212 55.7
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 4.5e-51 205.3 212 55.7
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 5.9e-51 204.9 208 55.3
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 7.7e-51 204.5 213 54.5
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 7.7e-51 204.5 212 56.6
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 7.7e-51 204.5 209 54.1
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 7.7e-51 204.5 214 56.1
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 1.0e-50 204.1 209 56.0
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 1.0e-50 204.1 210 53.8
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 1.3e-50 203.8 204 56.4
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 1.7e-50 203.4 207 55.6
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 1.7e-50 203.4 207 55.6
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 2.3e-50 203.0 208 55.8
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 2.9e-50 202.6 213 53.1
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 2.9e-50 202.6 213 53.1
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 5.0e-50 201.8 210 52.9
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 8.6e-50 201.1 220 54.5
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.5e-49 200.3 209 56.0
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.5e-49 200.3 209 56.0
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.9e-49 199.9 207 53.1
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 1.9e-49 199.9 210 51.0
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 3.3e-49 199.1 209 54.1
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 3.3e-49 199.1 214 51.9
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 7.2e-49 198.0 209 52.6
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 9.5e-49 197.6 207 52.2
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 1.2e-48 197.2 212 51.9
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 1.6e-48 196.8 207 52.7
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 1.6e-48 196.8 208 52.4
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 2.1e-48 196.4 206 52.4
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 6.1e-48 194.9 207 50.7
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 8.0e-48 194.5 204 52.0
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 1.0e-47 194.1 212 51.9
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 1.4e-47 193.7 207 52.2
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 1.8e-47 193.4 211 50.7
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 4.0e-47 192.2 205 57.1
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 4.0e-47 192.2 207 51.2
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 6.8e-47 191.4 206 51.9
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 8.9e-47 191.0 207 50.2
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 1.2e-46 190.7 214 50.0
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 1.2e-46 190.7 214 50.0
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 2.0e-46 189.9 207 51.7
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 2.6e-46 189.5 214 50.5
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 3.4e-46 189.1 271 44.3
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 4.4e-46 188.7 210 51.4
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 5.7e-46 188.3 209 55.5
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 1.3e-45 187.2 210 50.0
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 1.3e-45 187.2 210 50.0
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 1.3e-45 187.2 210 50.0
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 1.7e-45 186.8 207 50.2
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 2.2e-45 186.4 209 52.6
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 2.2e-45 186.4 212 50.9
Hund14363 Selenicereus undatus HOM05D002388 ORTHO05D004745 2.2e-45 186.4 215 52.6
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 3.7e-45 185.7 214 50.0
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 3.7e-45 185.7 208 55.3
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 4.9e-45 185.3 161 64.6
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 6.3e-45 184.9 220 45.5
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 6.3e-45 184.9 264 43.9
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 6.3e-45 184.9 329 39.8
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 1.1e-44 184.1 206 52.4
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 7.0e-44 181.4 218 50.5
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 9.2e-44 181.0 214 49.1
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 1.2e-43 180.6 211 49.8
Ciclev10003612m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.0e-43 179.9 209 52.2
Ciclev10003879m.g Citrus clementina HOM05D002388 ORTHO05D004745 4.5e-43 178.7 208 51.9
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 7.8e-43 177.9 214 49.1
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 3.8e-42 175.6 222 47.3
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 1.5e-41 173.7 207 46.9
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 3.3e-41 172.6 159 59.7
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 4.3e-41 172.2 209 47.8
Ciclev10003570m.g Citrus clementina HOM05D002388 ORTHO05D004745 6.8e-39 164.9 128 68.0
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 3.4e-38 162.5 184 50.5
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 4.4e-38 162.2 210 46.7
SalBow1G6210 Salvia bowleyana HOM05D002388 ORTHO05D004745 5.8e-38 161.8 204 47.1
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 2.2e-37 159.8 209 45.9
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 2.2e-37 159.8 234 44.4
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 3.7e-37 159.1 214 46.3
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 1.1e-36 157.5 222 46.4
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 4.1e-36 155.6 205 42.9
CsaV3_3G048910 Cucumis sativus L. HOM05D002388 ORTHO05D004745 1.6e-35 153.7 210 43.3
Zm00001eb208800 Zea mays HOM05D002388 ORTHO05D004745 2.0e-35 153.3 208 49.5
CDE02G3148 Ceratophyllum demersum HOM05D002388 ORTHO05D004745 1.3e-34 150.6 110 70.0
Phvul.003G283700 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 2.3e-34 149.8 215 46.5
VMungo0251G2329 Vigna mungo HOM05D002388 ORTHO05D004745 3.9e-34 149.1 210 44.8
PGR042G2052 Punica granatum HOM05D002388 ORTHO05D004745 1.1e-33 147.5 212 46.7
ATR0829G180 Amborella trichopoda HOM05D002388 ORTHO05D004745 2.8e-32 142.9 102 67.6
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 6.8e-31 138.3 169 50.3
SEGI_33523 Sequoiadendron giganteum HOM05D002388 ORTHO05D004745 6.8e-31 138.3 122 58.2
Ciclev10003604m.g Citrus clementina HOM05D002388 ORTHO05D004745 3.4e-30 136.0 157 50.3
Pp3c21_10750 Physcomitrium patens HOM05D002388 ORTHO05D004745 6.4e-29 131.7 177 49.2
ClCG09G011710 Citrullus lanatus HOM05D002388 ORTHO05D004745 9.2e-28 127.9 210 38.6
Hund11196 Selenicereus undatus HOM05D002388 ORTHO05D004745 1.2e-27 127.5 166 48.8
Pp3c18_19000 Physcomitrium patens HOM05D002388 ORTHO05D004745 2.7e-27 126.3 227 40.5
Mapoly0149s0010 Marchantia polymorpha HOM05D002388 ORTHO05D004745 6.0e-27 125.2 167 46.1
SMO347G0656 Selaginella moellendorffii HOM05D002388 ORTHO05D004745 6.6e-26 121.7 129 52.7
DCAR_004282 Daucus carota HOM05D002388 ORTHO05D004745 1.1e-25 120.9 157 47.8
DCAR_008237 Daucus carota HOM05D002388 ORTHO05D004745 5.6e-25 118.6 164 44.5
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis HOM05D002388 ORTHO05D004745 8.1e-24 114.8 144 46.5
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 1.1e-23 114.4 186 42.5
CAN.G1298.37 Capsicum annuum HOM05D002388 ORTHO05D004745 1.4e-23 114.0 178 40.4
Os02g0127900 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D004745 2.1e-19 100.1 155 44.5
MELO3C013831.2 Cucumis melo HOM05D002388 ORTHO05D004745 2.3e-18 96.7 149 42.3
Hma1.2p1_0870F.1_g230820 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 1.3e-13 80.9 125 42.4
Actinidia07899 Actinidia chinensis HOM05D002388 ORTHO05D004745 2.2e-13 80.1 80 52.5
Lj8C306G7 Lonicera japonica HOM05D002388 ORTHO05D004745 2.2e-13 80.1 53 73.6
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 6.4e-13 78.6 42 88.1
Sed0007566 Sechium edule HOM05D002388 ORTHO05D004745 8.4e-13 78.2 207 33.3
Hma1.2p1_0572F.1_g181210 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 2.4e-12 76.6 44 79.5
Hma1.2p1_3278F.1_g334816 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 2.4e-12 76.6 44 79.5
AL1G46410 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 7.1e-12 75.1 123 42.3
SHI07360 Sapria himalayana HOM05D002388 ORTHO05D000001 2.1e-11 73.6 44 72.7
SHI07361 Sapria himalayana HOM05D002388 ORTHO05D000131 3.5e-11 72.8 101 41.6
CBR_g48716 Chara braunii HOM05D002388 ORTHO05D004745 3.9e-10 69.3 91 45.1
TPR.G3332 Trifolium pratense HOM05D000188 ORTHO05D000362 8.7e-10 68.2 75 45.3


User provided reference genes

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