Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g22760 Fragaria vesca HOM05D005023 ORTHO05D006009 1.3e-182 642.9 320 100.0
FAN18G3597 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.3e-182 642.9 320 100.0
FAN18G4268 Fragaria x ananassa HOM05D005023 ORTHO05D006009 6.5e-182 640.6 320 99.7
FAN08G0704 Fragaria x ananassa HOM05D005023 ORTHO05D006009 7.7e-175 617.1 320 96.2
FAN13G2198 Fragaria x ananassa HOM05D005023 ORTHO05D006009 2.9e-174 615.1 320 95.9
FAN13G2978 Fragaria x ananassa HOM05D005023 ORTHO05D006009 2.9e-174 615.1 320 95.9
RcHm_v2.0_Chr7g0211361 Rosa chinensis HOM05D005023 ORTHO05D006009 1.0e-155 553.5 320 87.5
FAN04G1126 Fragaria x ananassa HOM05D005023 ORTHO05D006009 8.1e-148 527.3 268 96.3
Prupe.5G030700 Prunus persica HOM05D005023 ORTHO05D006009 1.1e-131 473.8 319 74.0
MD06G1038100 Malus domestica HOM05D005023 ORTHO05D006009 4.2e-112 408.7 317 65.9
QL12p004398 Quercus lobata HOM05D005023 ORTHO05D006009 1.9e-101 373.2 317 59.3
Cfa012488 Carpinus fangiana HOM05D005023 ORTHO05D006009 4.6e-95 352.1 307 57.7
CiPaw.11G096900 Carya illinoinensis HOM05D005023 ORTHO05D006009 9.7e-93 344.4 304 58.2
TWI60G0688 Tripterygium wilfordii HOM05D005023 ORTHO05D006009 1.4e-88 330.5 310 54.2
GSVIVG01013101001 Vitis vinifera HOM05D005023 ORTHO05D006009 1.3e-84 317.4 316 52.5
Atru.chr12.846 Acer truncatum HOM05D005023 ORTHO05D006009 1.7e-84 317.0 308 54.9
Dinv28986 Davidia involucrata HOM05D005023 ORTHO05D006009 3.7e-84 315.8 300 51.3
Potri.003G095200 Populus trichocarpa HOM05D005023 ORTHO05D006009 2.6e-82 309.7 314 50.6
Manes.02G223400 Manihot esculenta HOM05D005023 ORTHO05D006009 4.5e-82 308.9 308 51.0
CSS0008599 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 7.7e-82 308.1 300 51.0
Thecc.03G307500 Theobroma cacao HOM05D005023 ORTHO05D006009 2.2e-81 306.6 313 52.7
Duzib084G0965 Durio zibethinus HOM05D005023 ORTHO05D006009 3.8e-81 305.8 301 52.2
Ciclev10016033m.g Citrus clementina HOM05D005023 ORTHO05D006009 4.2e-80 302.4 304 52.0
COL.COLO4_16967 Corchorus olitorius HOM05D005023 ORTHO05D006009 1.8e-78 297.0 270 54.1
Cpa.g.sc90.15 Carica papaya HOM05D005023 ORTHO05D006009 2.6e-77 293.1 277 53.4
Haze_08177 Corylus avellana HOM05D005023 ORTHO05D006009 2.2e-76 290.0 229 62.0
Gohir.A12G206900 Gossypium hirsutum HOM05D005023 ORTHO05D006009 2.2e-76 290.0 300 50.7
Gorai.008G224900 Gossypium raimondii HOM05D005023 ORTHO05D006009 2.8e-76 289.7 300 50.3
Actinidia09175 Actinidia chinensis HOM05D005023 ORTHO05D006009 8.2e-76 288.1 298 49.7
TPR.G14159 Trifolium pratense HOM05D005023 ORTHO05D006009 1.4e-75 287.3 305 49.8
Lalb_Chr25g0286701 Lupinus albus HOM05D005023 ORTHO05D006009 1.8e-75 287.0 311 48.9
Gohir.D12G209350 Gossypium hirsutum HOM05D005023 ORTHO05D006009 2.4e-75 286.6 300 50.0
Medtr8g066330 Medicago truncatula HOM05D005023 ORTHO05D006009 1.6e-74 283.9 318 48.1
Hma1.2p1_2161F.1_g315620 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 2.0e-74 283.5 304 49.0
CANSAT54G0648 Cannabis sativa HOM05D005023 ORTHO05D006009 3.5e-74 282.7 311 50.5
DCAR_031128 Daucus carota HOM05D005023 ORTHO05D006009 9.4e-72 274.6 265 51.3
Lj6g0028231 Lotus japonicus HOM05D005023 ORTHO05D006009 1.6e-71 273.9 318 47.5
Ca_22661_v3 Cicer arietinum L. HOM05D005023 ORTHO05D006009 2.1e-71 273.5 305 45.9
Actinidia25987 Actinidia chinensis HOM05D005023 ORTHO05D006009 3.6e-71 272.7 301 49.5
Psat4g122280 Pisum sativum HOM05D005023 ORTHO05D006009 1.8e-70 270.4 265 50.9
Aqoxy1G01584 Aquilegia oxysepala HOM05D005023 ORTHO05D006009 5.2e-70 268.9 277 47.7
Sabra01G0107600 Salix brachista HOM05D005023 ORTHO05D006009 3.3e-69 266.2 373 42.9
PSO782G3892 Papaver somniferum HOM05D005023 ORTHO05D006009 5.7e-69 265.4 267 49.1
Psat4g122680 Pisum sativum HOM05D005023 ORTHO05D006009 9.7e-69 264.6 277 49.1
Rhsim07G0130800 Rhododendron simsii HOM05D005023 ORTHO05D006009 1.7e-68 263.8 298 47.0
PGSC0003DMG400014810 Solanum tuberosum HOM05D005023 ORTHO05D006009 1.7e-68 263.8 255 52.2
vmacro00304 Vaccinium macrocarpon HOM05D005023 ORTHO05D006009 3.7e-68 262.7 239 54.0
Solyc08g076570.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 1.8e-67 260.4 255 51.4
Lj2A234G45 Lonicera japonica HOM05D005023 ORTHO05D006009 5.3e-67 258.8 327 41.9
CAN.G298.60 Capsicum annuum HOM05D005023 ORTHO05D006009 2.0e-66 256.9 255 50.6
CAN.G298.61 Capsicum annuum HOM05D005023 ORTHO05D006009 2.0e-66 256.9 255 50.6
CAN.G726.32 Capsicum annuum HOM05D005023 ORTHO05D006009 2.0e-66 256.9 255 50.6
Nitab4.5_0002380g0110 Nicotiana tabacum HOM05D005023 ORTHO05D006009 2.7e-66 256.5 304 46.4
Sopen08g025130 Solanum pennellii HOM05D005023 ORTHO05D006009 2.7e-66 256.5 252 51.6
Peaxi162Scf00170g00918 Petunia axillaris HOM05D005023 ORTHO05D006009 5.9e-66 255.4 257 51.0
PSO170G6706 Papaver somniferum HOM05D005023 ORTHO05D006009 1.7e-65 253.8 279 47.7
Sed0002054 Sechium edule HOM05D005023 ORTHO05D006009 1.7e-65 253.8 306 43.5
arahy.Tifrunner.gnm1.ann1.6CH5L4 Arachis hypogaea HOM05D005023 ORTHO05D006009 2.2e-65 253.4 323 43.3
PSO302G0152 Papaver somniferum HOM05D005023 ORTHO05D006009 2.2e-65 253.4 306 45.4
arahy.Tifrunner.gnm1.ann1.NK2KWA Arachis hypogaea HOM05D005023 ORTHO05D006009 2.9e-65 253.1 323 43.3
Phvul.009G009200 Phaseolus vulgaris HOM05D005023 ORTHO05D006009 3.8e-65 252.7 254 50.0
Sabra03G0064200 Salix brachista HOM05D005023 ORTHO05D006009 3.8e-65 252.7 342 43.9
arahy.Tifrunner.gnm1.ann1.J93PEP Arachis hypogaea HOM05D005023 ORTHO05D006009 8.5e-65 251.5 323 43.0
ECA240G3323 Erigeron canadensis HOM05D005023 ORTHO05D006009 8.5e-65 251.5 308 44.5
Migut.E00780 Erythranthe guttata HOM05D005023 ORTHO05D006009 8.5e-65 251.5 253 49.0
Nitab4.5_0000353g0050 Nicotiana tabacum HOM05D005023 ORTHO05D006009 8.5e-65 251.5 255 50.6
Lsat_1_v5_gn_6_80180 Lactuca sativa HOM05D005023 ORTHO05D006009 1.9e-64 250.4 271 45.8
ClCG04G001320 Citrullus lanatus HOM05D005023 ORTHO05D006009 4.2e-64 249.2 301 42.9
Glyma.06G013600 Glycine max HOM05D005023 ORTHO05D006009 7.2e-64 248.4 277 49.5
PGR042G2438 Punica granatum HOM05D005023 ORTHO05D006009 1.2e-63 247.7 256 46.9
MBI02_g28332_MAGBIO Magnolia biondii HOM05D005023 ORTHO05D006009 2.1e-63 246.9 298 47.0
Nitab4.5_0004669g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 2.7e-63 246.5 255 49.0
Glyma.04G013700 Glycine max HOM05D005023 ORTHO05D006009 8.0e-63 245.0 267 49.1
Eucgr.E00250 Eucalyptus grandis HOM05D005023 ORTHO05D006009 1.8e-62 243.8 310 44.2
Nn7g38116 Nelumbo nucifera HOM05D005023 ORTHO05D006009 2.3e-62 243.4 299 44.1
Nitab4.5_0004839g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 4.0e-62 242.7 248 49.6
CsaV3_1G033210 Cucumis sativus L. HOM05D000021 ORTHO05D000010 4.4e-61 239.2 268 43.7
Hund11209 Selenicereus undatus HOM05D005023 ORTHO05D006009 7.5e-61 238.4 292 45.9
Cc08_g03230 Coffea canephora HOM05D005023 ORTHO05D006009 4.8e-60 235.7 260 48.8
HanXRQChr03g0083581 Helianthus annuus HOM05D005023 ORTHO05D006009 1.1e-59 234.6 294 43.5
EL10Ac8g19220 Beta vulgaris HOM05D005023 ORTHO05D006009 9.1e-59 231.5 263 47.9
Ah.12g065340 Amaranthus hybridus HOM05D005023 ORTHO05D006009 1.2e-58 231.1 248 49.2
AUR62033976 Chenopodium quinoa HOM05D005023 ORTHO05D006009 1.0e-57 228.0 277 43.7
MSTRG.1995 Avicennia marina HOM05D005023 ORTHO05D006009 1.9e-56 223.8 253 45.1
SGA_v2.0_scaffold6G03150 Striga asiatica HOM05D005023 ORTHO05D006009 7.2e-56 221.9 291 41.2
THA.LOC104806696 Tarenaya hassleriana HOM05D005023 ORTHO05D006009 8.0e-55 218.4 300 41.7
SalBow6G4088 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.0e-54 216.5 256 43.4
SalBow6G6255 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.7e-53 212.2 248 42.7
SalBow8G0269 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.3e-52 211.1 248 42.7
SalBow6G3389 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.2e-52 210.3 248 42.7
SalBow6G2872 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.8e-52 209.9 248 42.7
SalBow6G3524 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.8e-52 209.9 248 42.7
Hma1.2p1_1594F.1_g292650 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 3.7e-52 209.5 218 51.8
Aa31sc182G50 Aethionema arabicum HOM05D005023 ORTHO05D006009 4.9e-52 209.1 313 39.6
SalBow6G3383 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.9e-52 209.1 248 42.3
SalBow6G4332 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.9e-52 209.1 248 42.7
SalBow6G6227 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.9e-52 209.1 248 42.3
SalBow6G6031 Salvia bowleyana HOM05D005023 ORTHO05D006009 8.3e-52 208.4 248 42.3
SalBow6G1717 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.1e-51 208.0 248 42.3
TPR.G3350 Trifolium pratense HOM05D005023 ORTHO05D006009 1.1e-51 208.0 243 47.3
PSO063G5178 Papaver somniferum HOM05D005023 ORTHO05D006009 5.4e-51 205.7 184 53.8
SalBow6G6846 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.2e-50 204.5 248 42.3
arahy.Tifrunner.gnm1.ann1.GAHP45 Arachis hypogaea HOM05D005023 ORTHO05D006009 1.6e-50 204.1 264 42.8
SalBow6G3781 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.9e-48 197.2 230 44.8
Thhalv10000976m.g Eutrema salsugineum HOM05D005023 ORTHO05D006009 2.5e-48 196.8 269 42.0
CARHR174600 Cardamine hirsuta HOM05D005023 ORTHO05D006009 2.8e-47 193.4 305 39.7
AL8G11450 Arabidopsis lyrata HOM05D005023 ORTHO05D006009 3.6e-47 193.0 302 40.1
Hma1.2p1_2161F.1_g315630 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 4.7e-47 192.6 155 61.3
Sp2g11650 Schrenkiella parvula HOM05D005023 ORTHO05D006009 6.1e-47 192.2 310 37.1
SHI20240 Sapria himalayana HOM05D000452 ORTHO05D000647 8.0e-47 191.8 255 42.4
BcaC06g31439 Brassica carinata HOM05D005023 ORTHO05D006009 1.4e-46 191.0 286 39.9
CDE02G4581 Ceratophyllum demersum HOM05D005023 ORTHO05D006009 2.3e-46 190.3 331 36.6
AT5G46850 Arabidopsis thaliana HOM05D005023 ORTHO05D006009 1.2e-45 188.0 313 38.3
BraA06t27429Z Brassica rapa HOM05D005023 ORTHO05D006009 2.0e-45 187.2 294 37.1
A06p45570 Brassica napus HOM05D005023 ORTHO05D006009 3.4e-45 186.4 285 37.5
Carub.0008s0106 Capsella rubella HOM05D005023 ORTHO05D006009 1.3e-44 184.5 298 38.9
BcaC06g34337 Brassica carinata HOM05D005023 ORTHO05D006009 3.7e-44 183.0 285 38.2
C07p30210 Brassica napus HOM05D005023 ORTHO05D006009 3.7e-44 183.0 285 38.2
BolC7t43557H Brassica oleracea HOM05D005023 ORTHO05D006009 2.4e-43 180.3 285 37.5
MELO3C033076.2 Cucumis melo HOM05D005023 ORTHO05D006009 5.4e-43 179.1 244 37.7
Os12g0596900 Oryza sativa ssp. japonica HOM05D005023 ORTHO05D006009 4.6e-42 176.0 286 37.8
SalBow6G0983 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.8e-42 175.3 168 47.0
Sc01g0007280 Simmondsia chinensis HOM05D005023 ORTHO05D006009 1.7e-41 174.1 259 39.4
SalBow6G0969 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.9e-41 172.9 168 47.0
SalBow6G5471 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.9e-41 172.9 168 47.0
SalBow6G1311 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.5e-40 170.2 172 45.9
HPP92_014897 Vanilla planifolia HOM05D005023 ORTHO05D006009 2.8e-39 166.8 246 38.2
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 2.3e-38 163.7 208 42.3
HPP92_014902 Vanilla planifolia HOM05D005023 ORTHO05D006009 5.2e-38 162.5 246 38.2
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 6.8e-38 162.2 245 39.6
Zm00001eb030880 Zea mays HOM05D005023 ORTHO05D006009 1.5e-37 161.0 207 41.5
Actinidia09177 Actinidia chinensis HOM05D005023 ORTHO05D006009 3.2e-35 153.3 266 36.1
Hma1.2p1_0572F.1_g181170 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 1.2e-31 141.4 131 54.2
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 2.0e-29 134.0 142 48.6
TAR375G0008 Trochodendron aralioides HOM05D005023 ORTHO05D006009 2.2e-28 130.6 204 38.2
Mapoly0088s0063 Marchantia polymorpha HOM05D005023 ORTHO05D006009 1.0e-25 121.7 204 33.3
SalBow6G6268 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.0e-25 121.7 161 41.6
SalBow6G0951 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.5e-21 107.8 135 41.5
MELO3C011047.2 Cucumis melo HOM05D005023 ORTHO05D006009 2.0e-21 107.5 102 50.0
SMO358G0075 Selaginella moellendorffii HOM05D005023 ORTHO05D006009 1.0e-17 95.1 199 30.7
Pp3c13_7870 Physcomitrium patens HOM05D005023 ORTHO05D006009 8.7e-17 92.0 211 31.8
CSS0036970 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 5.8e-13 79.3 92 45.7
SEGI_33873 Sequoiadendron giganteum HOM05D005023 ORTHO05D006009 1.3e-09 68.2 74 43.2
AagrBONN_evm.TU.Sc2ySwM_344.1294 Anthoceros agrestis HOM05D005023 ORTHO05D006009 2.1e-07 60.8 152 30.3


User provided reference genes

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