Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g22750 Fragaria vesca HOM05D007450 ORTHO05D009377 2.8e-55 218.4 113 100.0
FAN18G1197 Fragaria x ananassa HOM05D007450 ORTHO05D009377 2.8e-55 218.4 113 100.0
FAN18G1518 Fragaria x ananassa HOM05D007450 ORTHO05D009377 2.8e-55 218.4 113 100.0
FAN08G0787 Fragaria x ananassa HOM05D007450 ORTHO05D009377 1.8e-54 215.7 113 98.2
FAN13G0277 Fragaria x ananassa HOM05D007450 ORTHO05D009377 7.0e-54 213.8 113 98.2
FAN13G1033 Fragaria x ananassa HOM05D007450 ORTHO05D009377 7.0e-54 213.8 113 98.2
FAN04G2147 Fragaria x ananassa HOM05D007450 ORTHO05D009377 2.0e-53 212.2 113 97.3
RcHm_v2.0_Chr7g0211351 Rosa chinensis HOM05D007450 ORTHO05D009377 2.2e-52 208.8 113 95.6
Prupe.5G030900 Prunus persica HOM05D007450 ORTHO05D009377 1.1e-38 163.3 113 77.9
MD06G1038000 Malus domestica HOM05D007450 ORTHO05D009377 1.5e-32 142.9 112 67.0
Cfa012487 Carpinus fangiana HOM05D007450 ORTHO05D009377 9.8e-32 140.2 113 68.1
Medtr5g029660 Medicago truncatula HOM05D007450 ORTHO05D009377 1.3e-31 139.8 114 66.7
CiPaw.11G096800 Carya illinoinensis HOM05D007450 ORTHO05D009377 2.2e-31 139.0 113 66.4
Manes.14G162800 Manihot esculenta HOM05D007450 ORTHO05D009377 2.2e-31 139.0 109 72.5
Psat2g138000 Pisum sativum HOM05D007450 ORTHO05D009377 3.7e-31 138.3 114 66.7
Gohir.A12G207000 Gossypium hirsutum HOM05D007450 ORTHO05D009377 4.9e-31 137.9 109 70.6
Dinv25243 Davidia involucrata HOM05D007450 ORTHO05D009377 6.3e-31 137.5 111 67.6
Potri.001G138700 Populus trichocarpa HOM05D007450 ORTHO05D009377 6.3e-31 137.5 113 66.4
CANSAT21G1074 Cannabis sativa HOM05D007450 ORTHO05D009377 2.4e-30 135.6 108 71.3
PGR031G1038 Punica granatum HOM05D007450 ORTHO05D009377 7.0e-30 134.0 113 69.0
Rhsim07G0130700 Rhododendron simsii HOM05D007450 ORTHO05D009377 2.0e-29 132.5 111 66.7
Cc08_g03220 Coffea canephora HOM05D007450 ORTHO05D009377 7.8e-29 130.6 91 78.0
Lj2g0017142 Lotus japonicus HOM05D007450 ORTHO05D009377 1.3e-28 129.8 115 65.2
Actinidia14787 Actinidia chinensis HOM05D007450 ORTHO05D009377 5.0e-28 127.9 111 68.5
CSS0005314 Camellia sinensis var. sinensis HOM05D007450 ORTHO05D009377 6.6e-28 127.5 107 65.4
Ca_08150_v3 Cicer arietinum L. HOM05D007450 ORTHO05D009377 6.6e-28 127.5 114 63.2
Actinidia09178 Actinidia chinensis HOM05D007450 ORTHO05D009377 8.6e-28 127.1 102 69.6
THA.LOC104808475 Tarenaya hassleriana HOM05D007450 ORTHO05D009377 8.6e-28 127.1 109 64.2
Sed0022287 Sechium edule HOM05D007450 ORTHO05D009377 2.5e-27 125.6 99 70.7
Dinv28985 Davidia involucrata HOM05D007450 ORTHO05D009377 4.3e-27 124.8 91 73.6
Duzib205G1651 Durio zibethinus HOM05D007450 ORTHO05D009377 4.3e-27 124.8 105 65.7
TPR.G8094 Trifolium pratense HOM05D007450 ORTHO05D009377 4.3e-27 124.8 117 65.0
Gohir.D12G209400 Gossypium hirsutum HOM05D007450 ORTHO05D009377 5.6e-27 124.4 111 65.8
Glyma.01G015700 Glycine max HOM05D007450 ORTHO05D009377 9.5e-27 123.6 113 61.1
TAR629G3037 Trochodendron aralioides HOM05D007450 ORTHO05D009377 1.2e-26 123.2 116 59.5
Glyma.09G206700 Glycine max HOM05D007450 ORTHO05D009377 6.1e-26 120.9 113 59.3
MELO3C003430.2 Cucumis melo HOM05D007450 ORTHO05D009377 8.0e-26 120.6 99 67.7
Sabra01G0107700 Salix brachista HOM05D007450 ORTHO05D009377 2.3e-25 119.0 93 68.8
Atru.chr6.1639 Acer truncatum HOM05D007450 ORTHO05D009377 4.0e-25 118.2 113 59.3
Carub.0001s3064 Capsella rubella HOM05D007450 ORTHO05D009377 8.9e-25 117.1 114 57.9
ClCG09G011730 Citrullus lanatus HOM05D007450 ORTHO05D009377 8.9e-25 117.1 93 66.7
THA.LOC104798592 Tarenaya hassleriana HOM05D007450 ORTHO05D009377 1.2e-24 116.7 109 56.9
vmacro14189 Vaccinium macrocarpon HOM05D007450 ORTHO05D009377 2.6e-24 115.5 91 69.2
DCAR_008242 Daucus carota HOM05D007450 ORTHO05D009377 4.4e-24 114.8 91 70.3
Peaxi162Scf00170g00915 Petunia axillaris HOM05D007450 ORTHO05D009377 4.4e-24 114.8 107 60.7
Thecc.03G307400 Theobroma cacao HOM05D007450 ORTHO05D009377 4.4e-24 114.8 91 71.4
GSVIVG01013568001 Vitis vinifera HOM05D007450 ORTHO05D009377 4.4e-24 114.8 94 64.9
Ciclev10018330m.g Citrus clementina HOM05D007450 ORTHO05D009377 5.7e-24 114.4 90 70.0
Nitab4.5_0000353g0070 Nicotiana tabacum HOM05D007450 ORTHO05D009377 5.7e-24 114.4 102 63.7
Thhalv10009436m.g Eutrema salsugineum HOM05D007450 ORTHO05D009377 9.8e-24 113.6 114 55.3
ECA233G1068 Erigeron canadensis HOM05D007450 ORTHO05D009377 1.3e-23 113.2 103 61.2
Nitab4.5_0000685g0040 Nicotiana tabacum HOM05D007450 ORTHO05D009377 1.3e-23 113.2 91 67.0
QL12p004405 Quercus lobata HOM05D007450 ORTHO05D009377 2.2e-23 112.5 100 67.0
AT1G32310 Arabidopsis thaliana HOM05D007450 ORTHO05D009377 2.9e-23 112.1 98 61.2
Lalb_Chr05g0215841 Lupinus albus HOM05D007450 ORTHO05D009377 2.9e-23 112.1 86 66.3
Peaxi162Scf00170g01010 Petunia axillaris HOM05D007450 ORTHO05D009377 2.9e-23 112.1 105 61.0
Sp1g27980 Schrenkiella parvula HOM05D007450 ORTHO05D009377 3.7e-23 111.7 98 62.2
Lsat_1_v5_gn_6_1640 Lactuca sativa HOM05D007450 ORTHO05D009377 4.9e-23 111.3 103 60.2
Peaxi162Scf00879g00221 Petunia axillaris HOM05D007450 ORTHO05D009377 4.9e-23 111.3 106 60.4
CAN.G298.58 Capsicum annuum HOM05D007450 ORTHO05D009377 8.3e-23 110.5 102 61.8
Sopen08g025140 Solanum pennellii HOM05D007450 ORTHO05D009377 8.3e-23 110.5 101 60.4
Sed0003049 Sechium edule HOM05D007450 ORTHO05D009377 1.4e-22 109.8 101 60.4
CARHR031660 Cardamine hirsuta HOM05D007450 ORTHO05D009377 3.2e-22 108.6 98 59.2
BcaC05g27880 Brassica carinata HOM05D007450 ORTHO05D009377 4.1e-22 108.2 98 59.2
Eucgr.E00251 Eucalyptus grandis HOM05D007450 ORTHO05D009377 4.1e-22 108.2 104 58.7
A05p25040 Brassica napus HOM05D007450 ORTHO05D009377 5.4e-22 107.8 98 59.2
Solyc08g076580.3 Solanum lycopersicum HOM05D007450 ORTHO05D009377 9.2e-22 107.1 102 59.8
Gorai.008G225000 Gossypium raimondii HOM05D007450 ORTHO05D009377 2.0e-21 105.9 93 68.8
Haze_08178 Corylus avellana HOM05D007450 ORTHO05D009377 2.7e-21 105.5 173 43.9
PGSC0003DMG400014800 Solanum tuberosum HOM05D007450 ORTHO05D009377 2.7e-21 105.5 91 63.7
Phvul.002G138300 Phaseolus vulgaris HOM05D007450 ORTHO05D009377 4.6e-21 104.8 113 54.0
C05p38880 Brassica napus HOM05D007450 ORTHO05D009377 5.9e-21 104.4 99 58.6
BolC5t32629H Brassica oleracea HOM05D007450 ORTHO05D009377 5.9e-21 104.4 99 58.6
BraA05t21386Z Brassica rapa HOM05D007450 ORTHO05D009377 5.9e-21 104.4 101 57.4
arahy.Tifrunner.gnm1.ann1.UE78BX Arachis hypogaea HOM05D007450 ORTHO05D009377 7.8e-21 104.0 93 60.2
arahy.Tifrunner.gnm1.ann1.XXZI65 Arachis hypogaea HOM05D007450 ORTHO05D009377 7.8e-21 104.0 93 60.2
BcaB03g13745 Brassica carinata HOM05D007450 ORTHO05D009377 1.0e-20 103.6 98 57.1
Potri.003G095100 Populus trichocarpa HOM05D007450 ORTHO05D009377 1.0e-20 103.6 93 62.4
PSO063G4138 Papaver somniferum HOM05D007450 ORTHO05D009377 1.3e-20 103.2 115 53.9
HanXRQChr13g0395471 Helianthus annuus HOM05D007450 ORTHO05D009377 1.7e-20 102.8 96 60.4
Aa31LG2G13720 Aethionema arabicum HOM05D007450 ORTHO05D009377 2.3e-20 102.4 99 55.6
PSO782G2764 Papaver somniferum HOM05D007450 ORTHO05D009377 3.0e-20 102.1 115 53.0
Aqoxy3G02217 Aquilegia oxysepala HOM05D007450 ORTHO05D009377 1.1e-19 100.1 122 50.8
VMungo1215G2816 Vigna mungo HOM05D007450 ORTHO05D009377 7.3e-19 97.4 92 59.8
HPP92_001521 Vanilla planifolia HOM05D007450 ORTHO05D009377 1.4e-17 93.2 90 56.7
Sc01g0007300 Simmondsia chinensis HOM05D007450 ORTHO05D009377 2.3e-17 92.4 134 47.0
MSTRG.1994 Avicennia marina HOM05D007450 ORTHO05D009377 8.9e-17 90.5 102 52.0
Hund11210 Selenicereus undatus HOM05D007450 ORTHO05D009377 5.8e-16 87.8 88 56.8
Lalb_Chr16g0381181 Lupinus albus HOM05D007450 ORTHO05D009377 7.5e-16 87.4 94 58.5
ATR0829G039 Amborella trichopoda HOM05D007450 ORTHO05D009377 9.8e-16 87.0 93 55.9
AUR62018673 Chenopodium quinoa HOM05D007450 ORTHO05D009377 2.9e-15 85.5 86 55.8
EL10Ac5g12043 Beta vulgaris HOM05D007450 ORTHO05D009377 1.1e-14 83.6 91 53.8
SHI36446 Sapria himalayana HOM05D007450 ORTHO05D009377 1.1e-14 83.6 55 69.1
SalBow1G6923 Salvia bowleyana HOM05D007450 ORTHO05D009377 5.4e-14 81.3 50 76.0
COL.COLO4_16968 Corchorus olitorius HOM05D007450 ORTHO05D009377 1.7e-12 76.3 52 69.2
Os10g0575950 Oryza sativa ssp. japonica HOM05D007450 ORTHO05D009377 1.7e-12 76.3 96 47.9
Migut.E00781 Erythranthe guttata HOM05D007450 ORTHO05D009377 2.3e-12 75.9 60 63.3
CDE11G0326 Ceratophyllum demersum HOM05D007450 ORTHO05D009377 3.0e-12 75.5 88 52.3
Zm00001eb024740 Zea mays HOM05D007450 ORTHO05D009377 1.9e-11 72.8 60 58.3
CsaV3_3G048930 Cucumis sativus L. HOM05D007450 ORTHO05D009377 3.3e-11 72.0 40 80.0
CARHR033090 Cardamine hirsuta HOM05D007450 ORTHO05D009377 5.8e-08 61.2 42 66.7


User provided reference genes

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