Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g22030 Fragaria vesca HOM05D008115 ORTHO05D010112 1.6e-69 266.2 156 100.0
FAN18G3637 Fragaria x ananassa HOM05D008115 ORTHO05D010112 1.1e-68 263.5 156 99.4
FAN08G1703 Fragaria x ananassa HOM05D008115 ORTHO05D010112 4.6e-64 248.1 156 95.5
FAN04G2182 Fragaria x ananassa HOM05D008115 ORTHO05D010112 1.3e-63 246.5 156 95.5
FAN13G1458 Fragaria x ananassa HOM05D008115 ORTHO05D010112 1.1e-60 236.9 167 89.2
Prupe.5G036900 Prunus persica HOM05D008115 ORTHO05D010112 1.4e-33 146.7 156 54.5
Lj2g0018003 Lotus japonicus HOM05D008115 ORTHO05D010112 7.2e-17 91.3 156 41.7
Psat2g136120 Pisum sativum HOM05D008115 ORTHO05D010112 2.1e-16 89.7 157 40.8
QL12p005248 Quercus lobata HOM05D008115 ORTHO05D010112 6.7e-15 84.7 166 42.8
QL12p005415 Quercus lobata HOM05D008115 ORTHO05D010112 6.7e-15 84.7 166 42.8
Ciclev10012855m.g Citrus clementina HOM05D008115 ORTHO05D010112 4.4e-14 82.0 159 37.7
TWI15G1224 Tripterygium wilfordii HOM05D008115 ORTHO05D010112 4.4e-14 82.0 169 36.7
arahy.Tifrunner.gnm1.ann1.6THG3J Arachis hypogaea HOM05D008115 ORTHO05D010112 5.7e-14 81.6 158 41.1
arahy.Tifrunner.gnm1.ann1.FLG01L Arachis hypogaea HOM05D008115 ORTHO05D010112 5.7e-14 81.6 158 41.1
Potri.003G091600 Populus trichocarpa HOM05D008115 ORTHO05D010112 1.3e-13 80.5 156 36.5
Glyma.09G204000 Glycine max HOM05D008115 ORTHO05D010112 2.2e-13 79.7 161 39.1
Duzib205G0809 Durio zibethinus HOM05D008115 ORTHO05D010112 2.8e-13 79.3 156 41.7
Dinv28956 Davidia involucrata HOM05D000381 ORTHO05D010112 8.2e-13 77.8 155 35.5
Medtr5g030520 Medicago truncatula HOM05D008115 ORTHO05D010112 8.2e-13 77.8 155 36.8
Sabra03G0061200 Salix brachista HOM05D001142 ORTHO05D003453 1.8e-12 76.6 156 37.8
Thecc.03G228100 Theobroma cacao HOM05D008115 ORTHO05D010112 1.8e-12 76.6 157 40.8
TPR.G15446 Trifolium pratense HOM05D008115 ORTHO05D010112 3.1e-12 75.9 150 39.3
CARHR174700 Cardamine hirsuta HOM05D008115 ORTHO05D010112 1.6e-11 73.6 160 36.9
Sed0022703 Sechium edule HOM05D008115 ORTHO05D010112 1.6e-11 73.6 158 38.0
GSVIVG01013162001 Vitis vinifera HOM05D008115 ORTHO05D010112 2.0e-11 73.2 158 34.8
VMungo1215G1226 Vigna mungo HOM05D008115 ORTHO05D010112 4.5e-11 72.0 160 33.8
Thhalv10001038m.g Eutrema salsugineum HOM05D008115 ORTHO05D010112 5.9e-11 71.6 152 39.5
Gohir.A08G156700 Gossypium hirsutum HOM05D008115 ORTHO05D010112 1.7e-10 70.1 160 35.0
Gohir.D08G177100 Gossypium hirsutum HOM05D008115 ORTHO05D010112 1.7e-10 70.1 160 35.0
Gorai.004G185300 Gossypium raimondii HOM05D008115 ORTHO05D010112 1.7e-10 70.1 160 35.0
BraA02t08049Z Brassica rapa HOM05D008115 ORTHO05D010112 2.9e-10 69.3 152 42.8
Carub.0008s0112 Capsella rubella HOM05D008115 ORTHO05D010112 2.9e-10 69.3 154 39.0
AT5G46795 Arabidopsis thaliana HOM05D008115 ORTHO05D010112 6.5e-10 68.2 98 49.0
BcaC03g16890 Brassica carinata HOM05D008115 ORTHO05D010112 8.5e-10 67.8 152 40.1
A02p30340 Brassica napus HOM05D008115 ORTHO05D010112 8.5e-10 67.8 85 51.8
C02p47870 Brassica napus HOM05D008115 ORTHO05D010112 8.5e-10 67.8 152 40.1
BolC2t10820H Brassica oleracea HOM05D008115 ORTHO05D010112 8.5e-10 67.8 152 40.1
Phvul.002G142000 Phaseolus vulgaris HOM05D008115 ORTHO05D010112 8.5e-10 67.8 163 36.2
CiPaw.12G063600 Carya illinoinensis HOM05D008115 ORTHO05D010112 1.1e-09 67.4 161 36.0
AL8G11540 Arabidopsis lyrata HOM05D008115 ORTHO05D010112 1.5e-09 67.0 98 48.0
BcaC04g21681 Brassica carinata HOM05D008115 ORTHO05D010112 1.5e-09 67.0 70 58.6
C09p28900 Brassica napus HOM05D008115 ORTHO05D010112 1.5e-09 67.0 70 58.6
Sp2g11610 Schrenkiella parvula HOM05D008115 ORTHO05D010112 1.5e-09 67.0 98 50.0
THA.LOC104806705 Tarenaya hassleriana HOM05D008115 ORTHO05D010112 9.4e-09 64.3 103 45.6
Aa31LG9G6090 Aethionema arabicum HOM05D008115 ORTHO05D010112 3.6e-08 62.4 81 49.4
A09p22550 Brassica napus HOM05D008115 ORTHO05D010112 3.6e-08 62.4 69 56.5
CsaV3_3G049200 Cucumis sativus L. HOM05D008115 ORTHO05D010112 4.7e-08 62.0 162 33.3
CiPaw.11G093100 Carya illinoinensis HOM05D008115 ORTHO05D010112 1.8e-07 60.1 167 37.7
Aqoxy3G02357 Aquilegia oxysepala HOM05D008115 ORTHO05D010112 1.2e-06 57.4 65 47.7
BcaB07g30820 Brassica carinata HOM05D008115 ORTHO05D010112 1.5e-06 57.0 66 51.5
RcHm_v2.0_Chr7g0209671 Rosa chinensis HOM05D008115 ORTHO05D010112 2.0e-06 56.6 30 86.7
BcaC06g34346 Brassica carinata HOM05D008115 ORTHO05D010112 2.6e-06 56.2 153 34.6
C07p30110 Brassica napus HOM05D008115 ORTHO05D010112 2.6e-06 56.2 153 34.6
BolC7t43551H Brassica oleracea HOM05D008115 ORTHO05D010112 2.6e-06 56.2 153 34.6
PGR042G2453 Punica granatum HOM05D008115 ORTHO05D010112 2.6e-06 56.2 158 33.5
Solyc08g150100.1 Solanum lycopersicum HOM05D028028 ORTHO05D010112 3.3e-06 55.8 158 26.6


User provided reference genes

Program Settings