Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g21920 Fragaria vesca HOM05D005423 ORTHO05D006223 1.7e-80 302.8 171 100.0
FvH4_1g24910 Fragaria vesca HOM05D005423 ORTHO05D006223 2.9e-35 152.5 98 81.6
FAN16G1003 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.0e-32 144.1 91 82.4
FvH4_3g11440 Fragaria vesca HOM05D005423 ORTHO05D006223 2.3e-32 142.9 91 81.3
FvH4_6g29350 Fragaria vesca HOM05D005423 ORTHO05D006223 9.0e-29 131.0 97 81.4
FvH4_5g18240 Fragaria vesca HOM05D005423 ORTHO05D006223 5.8e-28 128.3 90 77.8
FAN23G0143 Fragaria x ananassa HOM05D005423 ORTHO05D006223 6.4e-27 124.8 84 76.2
FAN18G3875 Fragaria x ananassa HOM05D005423 ORTHO05D006223 4.2e-26 122.1 90 74.4
MD00G1097400 Malus domestica HOM05D005423 ORTHO05D006223 1.5e-23 113.6 93 60.2
Prupe.4G102300 Prunus persica HOM05D005423 ORTHO05D006223 3.1e-21 105.9 91 57.1
Cfa000754 Carpinus fangiana HOM05D005423 ORTHO05D006223 3.8e-19 99.0 164 40.2
QL05p063092 Quercus lobata HOM05D005423 ORTHO05D006223 5.5e-18 95.1 96 51.0
Phvul.009G218400 Phaseolus vulgaris HOM05D005423 ORTHO05D006223 7.9e-17 91.3 100 50.0
Nitab4.5_0004015g0040 Nicotiana tabacum HOM05D005423 ORTHO05D006223 1.3e-16 90.5 106 47.2
FAN03G0475 Fragaria x ananassa HOM05D005423 ORTHO05D006223 2.3e-16 89.7 65 75.4
FAN11G1050 Fragaria x ananassa HOM05D005423 ORTHO05D006223 2.3e-16 89.7 65 75.4
FAN14G5542 Fragaria x ananassa HOM05D005423 ORTHO05D006223 2.3e-16 89.7 65 75.4
Nitab4.5_0006659g0010 Nicotiana tabacum HOM05D005423 ORTHO05D006223 2.3e-16 89.7 98 49.0
SGA_v2.0_scaffold1G00298 Striga asiatica HOM05D005423 ORTHO05D006223 2.3e-16 89.7 98 48.0
Thecc.06G005400 Theobroma cacao HOM05D005423 ORTHO05D006223 8.7e-16 87.8 103 48.5
TAR636G0950 Trochodendron aralioides HOM05D005423 ORTHO05D006223 2.5e-15 86.3 100 43.0
Duzib160G0446 Durio zibethinus HOM05D005423 ORTHO05D006223 4.3e-15 85.5 101 48.5
CANSAT35G1706 Cannabis sativa HOM05D005423 ORTHO05D006223 5.7e-15 85.1 96 50.0
FAN18G0575 Fragaria x ananassa HOM05D005423 ORTHO05D006223 5.7e-15 85.1 70 68.6
Hma1.2p1_0410F.1_g147050 Hydrangea macrophylla HOM05D005423 ORTHO05D006223 5.7e-15 85.1 92 52.2
CiPaw.09G149100 Carya illinoinensis HOM05D005423 ORTHO05D006223 7.4e-15 84.7 168 36.3
FAN21G0600 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.3e-14 84.0 53 81.1
FAN25G0767 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.6e-14 83.6 53 79.2
Glyma.15G191500 Glycine max HOM05D005423 ORTHO05D006223 2.8e-14 82.8 140 41.4
Ciclev10017493m.g Citrus clementina HOM05D005423 ORTHO05D006223 4.8e-14 82.0 98 48.0
HanXRQChr01g0020631 Helianthus annuus HOM05D005423 ORTHO05D006223 4.8e-14 82.0 102 47.1
Lj1P1155T48 Lonicera japonica HOM05D005423 ORTHO05D006223 8.2e-14 81.3 153 34.6
Manes.03G066900 Manihot esculenta HOM05D005423 ORTHO05D006223 8.2e-14 81.3 94 46.8
CAN.G84.20 Capsicum annuum HOM05D005423 ORTHO05D006223 1.1e-13 80.9 94 42.6
PGSC0003DMG400025363 Solanum tuberosum HOM05D005423 ORTHO05D006223 3.1e-13 79.3 96 41.7
Sopen11g030350 Solanum pennellii HOM05D005423 ORTHO05D006223 5.3e-13 78.6 96 41.7
Solyc11g072680.1 Solanum lycopersicum HOM05D005423 ORTHO05D006223 9.0e-13 77.8 96 41.7
Gohir.D02G104700 Gossypium hirsutum HOM05D005423 ORTHO05D006223 1.2e-12 77.4 110 40.0
Gorai.005G118900 Gossypium raimondii HOM05D005423 ORTHO05D006223 1.2e-12 77.4 110 40.0
TWI38G0231 Tripterygium wilfordii HOM05D005423 ORTHO05D006223 3.4e-12 75.9 139 34.5
Migut.M01932 Erythranthe guttata HOM05D005423 ORTHO05D006223 4.5e-12 75.5 99 39.4
Atru.chr10.659 Acer truncatum HOM05D005423 ORTHO05D006223 5.8e-12 75.1 95 41.1
MBI19_g30013_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 1.0e-11 74.3 92 41.3
Psat1g018720 Pisum sativum HOM05D005423 ORTHO05D006223 1.0e-11 74.3 94 46.8
Gohir.A02G088801 Gossypium hirsutum HOM05D005423 ORTHO05D006223 1.3e-11 73.9 145 35.2
AUR62028667 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.2e-11 73.2 94 38.3
FAN11G2744 Fragaria x ananassa HOM05D005423 ORTHO05D046010 2.2e-11 73.2 53 73.6
Rhsim13G0126500 Rhododendron simsii HOM05D005423 ORTHO05D006223 6.5e-11 71.6 173 34.7
Lsat_1_v5_gn_1_91741 Lactuca sativa HOM05D005423 ORTHO05D006223 1.1e-10 70.9 175 32.6
TPR.G22906 Trifolium pratense HOM05D005423 ORTHO05D006223 1.9e-10 70.1 93 45.2
MBI19_g33491_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 2.5e-10 69.7 92 39.1
FvH4_3g19970 Fragaria vesca HOM05D005423 ORTHO05D046010 3.2e-10 69.3 53 71.7
Potri.011G155150 Populus trichocarpa HOM05D005423 ORTHO05D006223 3.2e-10 69.3 91 35.2
Aqoxy2G01436 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 5.5e-10 68.6 91 36.3
Sc04g0008360 Simmondsia chinensis HOM05D005423 ORTHO05D006223 5.5e-10 68.6 89 41.6
Lj6g0018842 Lotus japonicus HOM05D005423 ORTHO05D006223 9.3e-10 67.8 153 34.0
EL10Ac5g10610 Beta vulgaris HOM05D005423 ORTHO05D006223 1.2e-09 67.4 98 32.7
Ca_02385_v3 Cicer arietinum L. HOM05D005423 ORTHO05D006223 1.2e-09 67.4 157 33.1
Potri.001G440800 Populus trichocarpa HOM05D005423 ORTHO05D006223 2.1e-09 66.6 157 31.8
FAN25G3864 Fragaria x ananassa HOM05D046692 ORTHO05D006223 3.5e-09 65.9 43 76.7
Sc21g0002200 Simmondsia chinensis HOM05D005423 ORTHO05D006223 3.5e-09 65.9 96 39.6
Haze_05969 Corylus avellana HOM05D005423 ORTHO05D006223 4.6e-09 65.5 141 34.8
Lalb_Chr11g0073251 Lupinus albus HOM05D005423 ORTHO05D006223 4.6e-09 65.5 143 33.6
FAN09G3285 Fragaria x ananassa HOM05D046692 ORTHO05D006223 3.0e-08 62.8 41 78.0
COL.COLO4_26869 Corchorus olitorius HOM05D005423 ORTHO05D006223 3.9e-08 62.4 97 44.3
Ah.02g124440 Amaranthus hybridus HOM05D005423 ORTHO05D006223 5.1e-08 62.0 149 30.9
AUR62008089 Chenopodium quinoa HOM05D005423 ORTHO05D006223 6.7e-08 61.6 98 35.7
AT1G30800 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 8.7e-08 61.2 116 36.2
FAN26G0124 Fragaria x ananassa HOM05D005784 ORTHO05D007803 8.7e-08 61.2 39 76.9
AL1G44970 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 1.5e-07 60.5 109 37.6
Carub.0001s2910 Capsella rubella HOM05D005423 ORTHO05D006223 1.5e-07 60.5 102 39.2
Sc21g0002210 Simmondsia chinensis HOM05D005423 ORTHO05D006223 1.5e-07 60.5 96 36.5
FAN28G2925 Fragaria x ananassa HOM05D005784 ORTHO05D007803 1.9e-07 60.1 44 68.2
C08p24310 Brassica napus HOM05D005423 ORTHO05D006223 5.7e-07 58.5 96 35.4
Aqoxy7G03258 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 7.4e-07 58.2 67 35.8
Medtr2g047120 Medicago truncatula HOM05D005423 ORTHO05D006223 7.4e-07 58.2 153 31.4
BolC8t50049H Brassica oleracea HOM05D005423 ORTHO05D006223 1.3e-06 57.4 96 35.4
THA.LOC104814335 Tarenaya hassleriana HOM05D005423 ORTHO05D006223 1.3e-06 57.4 137 32.1
BcaB04g18206 Brassica carinata HOM05D005423 ORTHO05D006223 2.2e-06 56.6 101 33.7
BcaC07g39399 Brassica carinata HOM05D005423 ORTHO05D006223 2.2e-06 56.6 96 35.4
A06p18470 Brassica napus HOM05D005423 ORTHO05D006223 2.8e-06 56.2 96 35.4
A08p11040 Brassica napus HOM05D005423 ORTHO05D006223 2.8e-06 56.2 101 34.7
CARHR030270 Cardamine hirsuta HOM05D005423 ORTHO05D006223 2.8e-06 56.2 100 34.0
Aa31LG6G12020 Aethionema arabicum HOM05D005423 ORTHO05D006223 3.7e-06 55.8 102 32.4
BcaC07g37806 Brassica carinata HOM05D005423 ORTHO05D006223 3.7e-06 55.8 101 33.7
BolC8t48195H Brassica oleracea HOM05D005423 ORTHO05D006223 3.7e-06 55.8 101 33.7
BraA08t33095Z Brassica rapa HOM05D005423 ORTHO05D006223 3.7e-06 55.8 101 34.7


User provided reference genes

Program Settings