Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g20810 Fragaria vesca HOM05D006116 ORTHO05D007795 1.6e-260 902.1 437 100.0
FAN18G3779 Fragaria x ananassa HOM05D006116 ORTHO05D007795 6.5e-257 890.2 437 98.6
FAN08G3374 Fragaria x ananassa HOM05D006116 ORTHO05D007795 2.9e-249 864.8 437 96.1
FAN04G0705 Fragaria x ananassa HOM05D006116 ORTHO05D007795 1.6e-247 859.0 437 95.2
RcHm_v2.0_Chr7g0207741 Rosa chinensis HOM05D006116 ORTHO05D007795 1.4e-211 739.6 440 84.1
Prupe.5G050800 Prunus persica HOM05D006116 ORTHO05D007795 2.1e-199 699.1 438 77.6
MD04G1057000 Malus domestica HOM05D006116 ORTHO05D007795 9.5e-192 673.7 440 75.9
COL.COLO4_06703 Corchorus olitorius HOM05D006116 ORTHO05D007795 1.6e-186 656.4 441 71.7
Ciclev10020221m.g Citrus clementina HOM05D006116 ORTHO05D007795 2.0e-181 639.4 440 70.5
FAN13G0371 Fragaria x ananassa HOM05D006116 ORTHO05D007795 5.8e-181 637.9 333 94.0
CSS0043999 Camellia sinensis var. sinensis HOM05D006116 ORTHO05D007795 7.5e-181 637.5 442 69.7
vmacro00376 Vaccinium macrocarpon HOM05D006116 ORTHO05D007795 4.9e-180 634.8 442 70.4
Rhsim11G0056500 Rhododendron simsii HOM05D006116 ORTHO05D007795 2.7e-178 629.0 441 69.4
Actinidia03408 Actinidia chinensis HOM05D006116 ORTHO05D007795 1.1e-176 623.6 440 68.4
PGR042G3339 Punica granatum HOM05D006116 ORTHO05D007795 3.1e-174 615.5 452 67.7
Nitab4.5_0006135g0020 Nicotiana tabacum HOM05D006116 ORTHO05D007795 9.2e-171 604.0 440 65.7
CANSAT21G1244 Cannabis sativa HOM05D006116 ORTHO05D007795 1.2e-170 603.6 465 65.8
CSS0034154 Camellia sinensis var. sinensis HOM05D006116 ORTHO05D007795 2.5e-168 595.9 442 66.3
QL12p007972 Quercus lobata HOM05D006116 ORTHO05D007795 5.6e-168 594.7 459 66.0
THA.LOC104813328 Tarenaya hassleriana HOM05D006116 ORTHO05D007795 5.6e-168 594.7 445 65.6
Hma1.2p1_0414F.1_g147510 Hydrangea macrophylla HOM05D006116 ORTHO05D007795 9.6e-168 594.0 442 67.4
PGSC0003DMG400001856 Solanum tuberosum HOM05D006116 ORTHO05D007795 9.6e-168 594.0 437 66.4
Nitab4.5_0001255g0040 Nicotiana tabacum HOM05D006116 ORTHO05D007795 1.2e-167 593.6 445 64.7
CAN.G1445.8 Capsicum annuum HOM05D006116 ORTHO05D007795 1.6e-167 593.2 436 65.8
Gorai.008G230000 Gossypium raimondii HOM05D006116 ORTHO05D007795 2.6e-165 585.9 442 66.7
Duzib205G0680 Durio zibethinus HOM05D006116 ORTHO05D007795 3.4e-165 585.5 437 67.3
HanXRQChr03g0087311 Helianthus annuus HOM05D006116 ORTHO05D007795 1.3e-164 583.6 438 66.0
CiPaw.11G085600 Carya illinoinensis HOM05D006116 ORTHO05D007795 1.7e-164 583.2 440 65.5
Gohir.A12G211900 Gossypium hirsutum HOM05D006116 ORTHO05D007795 1.7e-164 583.2 443 66.4
ClCG10G002040 Citrullus lanatus HOM05D006116 ORTHO05D007795 2.9e-164 582.4 437 66.4
Thecc.03G237000 Theobroma cacao HOM05D006116 ORTHO05D007795 3.8e-164 582.0 439 66.3
GSVIVG01013271001 Vitis vinifera HOM05D006116 ORTHO05D007795 6.4e-164 581.3 447 65.5
Sopen08g026090 Solanum pennellii HOM05D006116 ORTHO05D007795 7.1e-163 577.8 436 64.9
Medtr4g099100 Medicago truncatula HOM05D006116 ORTHO05D007795 2.1e-162 576.2 458 64.4
Oeu020145.1 Olea europaea HOM05D006116 ORTHO05D007795 2.7e-162 575.9 441 64.2
Solyc08g077510.4 Solanum lycopersicum HOM05D006116 ORTHO05D007795 3.5e-162 575.5 438 65.1
Potri.003G085600 Populus trichocarpa HOM05D006116 ORTHO05D007795 4.6e-162 575.1 438 65.3
MELO3C013885.2 Cucumis melo HOM05D006116 ORTHO05D007795 3.0e-161 572.4 437 65.0
CsaV3_3G002130 Cucumis sativus L. HOM05D006116 ORTHO05D007795 5.1e-161 571.6 437 64.8
arahy.Tifrunner.gnm1.ann1.L13TYF Arachis hypogaea HOM05D006116 ORTHO05D007795 1.9e-160 569.7 447 63.3
BolC7t45369H Brassica oleracea HOM05D006116 ORTHO05D007795 3.3e-160 568.9 439 66.5
Peaxi162Scf00084g00117 Petunia axillaris HOM05D006116 ORTHO05D007795 9.6e-160 567.4 436 64.4
arahy.Tifrunner.gnm1.ann1.F87Z6X Arachis hypogaea HOM05D006116 ORTHO05D007795 1.3e-159 567.0 448 63.2
C07p48610 Brassica napus HOM05D006116 ORTHO05D007795 1.6e-159 566.6 439 66.3
Nn1g00701 Nelumbo nucifera HOM05D006116 ORTHO05D007795 4.8e-159 565.1 442 64.0
Cc08_g01540 Coffea canephora HOM05D006116 ORTHO05D007795 6.2e-159 564.7 446 62.3
Lj4g0012718 Lotus japonicus HOM05D006116 ORTHO05D007795 8.1e-159 564.3 452 63.3
Lalb_Chr05g0220761 Lupinus albus HOM05D006116 ORTHO05D007795 1.1e-158 563.9 437 64.1
ECA240G2524 Erigeron canadensis HOM05D006116 ORTHO05D007795 1.4e-158 563.5 438 64.2
TWI60G0034 Tripterygium wilfordii HOM05D006116 ORTHO05D007795 1.8e-158 563.1 439 65.8
Ca_22031_v3 Cicer arietinum L. HOM05D006116 ORTHO05D007795 9.0e-158 560.8 439 64.7
Eucgr.E00329 Eucalyptus grandis HOM05D006116 ORTHO05D007795 8.4e-156 554.3 450 62.4
Glyma.17G150200 Glycine max HOM05D006116 ORTHO05D007795 8.4e-156 554.3 436 64.4
TPR.G11192 Trifolium pratense HOM05D006116 ORTHO05D007795 2.1e-154 549.7 448 61.8
Aa31LG2G13210 Aethionema arabicum HOM05D006116 ORTHO05D007795 2.7e-154 549.3 416 66.8
PSO732G0356 Papaver somniferum HOM05D006116 ORTHO05D007795 1.0e-153 547.4 447 62.9
DCAR_008310 Daucus carota HOM05D006116 ORTHO05D007795 2.5e-152 542.7 457 60.2
Manes.17G019700 Manihot esculenta HOM05D006116 ORTHO05D007795 3.7e-151 538.9 441 62.4
Phvul.003G227000 Phaseolus vulgaris HOM05D006116 ORTHO05D007795 6.2e-151 538.1 443 59.6
VMungo0251G0386 Vigna mungo HOM05D006116 ORTHO05D007795 1.8e-150 536.6 457 59.3
Aqoxy7G00869 Aquilegia oxysepala HOM05D006116 ORTHO05D007795 1.0e-148 530.8 455 59.1
BraA03t14121Z Brassica rapa HOM05D006116 ORTHO05D007795 1.3e-148 530.4 438 62.3
Lsat_1_v5_gn_6_88480 Lactuca sativa HOM05D006116 ORTHO05D007795 2.2e-148 529.6 447 60.0
Lj8A287G22 Lonicera japonica HOM05D006116 ORTHO05D007795 3.8e-148 528.9 401 64.1
A03p50320 Brassica napus HOM05D006116 ORTHO05D007795 1.1e-147 527.3 438 62.6
Ah.12g053810 Amaranthus hybridus HOM05D006116 ORTHO05D007795 3.5e-146 522.3 444 58.1
Lalb_Chr09g0329681 Lupinus albus HOM05D006116 ORTHO05D007795 1.0e-145 520.8 330 72.7
ClCG00G004790 Citrullus lanatus HOM05D006116 ORTHO05D007795 1.3e-145 520.4 437 61.6
CARHR223700 Cardamine hirsuta HOM05D006116 ORTHO05D007795 3.0e-145 519.2 438 60.5
PSO675G1792 Papaver somniferum HOM05D006116 ORTHO05D007795 1.1e-144 517.3 442 61.3
Sc07g0009020 Simmondsia chinensis HOM05D006116 ORTHO05D007795 1.5e-144 516.9 449 57.9
Gohir.D12G214400 Gossypium hirsutum HOM05D006116 ORTHO05D007795 2.5e-144 516.2 301 78.4
Migut.E00901 Erythranthe guttata HOM05D006116 ORTHO05D007795 4.3e-144 515.4 305 76.7
AL7G37600 Arabidopsis lyrata HOM05D006116 ORTHO05D007795 3.7e-143 512.3 438 60.3
Sp7g17070 Schrenkiella parvula HOM05D006116 ORTHO05D007795 4.8e-143 511.9 441 60.3
Sed0023369 Sechium edule HOM05D006116 ORTHO05D007795 6.2e-143 511.5 439 60.4
Hund14464 Selenicereus undatus HOM05D006116 ORTHO05D007795 1.1e-142 510.8 450 57.3
MSTRG.1960 Avicennia marina HOM05D006116 ORTHO05D007795 9.0e-142 507.7 437 60.2
Thhalv10025290m.g Eutrema salsugineum HOM05D006116 ORTHO05D007795 1.5e-141 506.9 441 60.1
unitig_21.g20374 Utricularia gibba HOM05D006116 ORTHO05D007795 7.1e-139 498.0 434 57.6
Os04g0542900 Oryza sativa ssp. japonica HOM05D006116 ORTHO05D007795 2.1e-138 496.5 464 55.8
SGA_v2.0_scaffold20G09247 Striga asiatica HOM05D006116 ORTHO05D007795 2.7e-138 496.1 498 51.2
Zm00001eb075030 Zea mays HOM05D006116 ORTHO05D007795 1.3e-137 493.8 474 55.5
ATR0829G115 Amborella trichopoda HOM05D006116 ORTHO05D007795 3.0e-137 492.7 446 58.1
Carub.0007s2428 Capsella rubella HOM05D006116 ORTHO05D007795 6.7e-137 491.5 444 57.9
EL10Ac5g12218 Beta vulgaris HOM05D006116 ORTHO05D007795 9.7e-136 487.6 515 50.5
AUR62018802 Chenopodium quinoa HOM05D006116 ORTHO05D007795 3.4e-133 479.2 408 57.4
TAR375G0725 Trochodendron aralioides HOM05D006116 ORTHO05D007795 2.0e-128 463.4 386 61.1
AUR62007200 Chenopodium quinoa HOM05D006116 ORTHO05D007795 2.5e-128 463.0 300 69.0
TAR375G0708 Trochodendron aralioides HOM05D006116 ORTHO05D007795 4.2e-123 445.7 370 60.8
SEGI_40490 Sequoiadendron giganteum HOM05D006116 ORTHO05D007795 4.4e-120 435.6 293 69.6
HPP92_020688 Vanilla planifolia HOM05D006116 ORTHO05D007795 1.7e-116 423.7 450 51.8
AagrBONN_evm.TU.Sc2ySwM_368.518 Anthoceros agrestis HOM05D006116 ORTHO05D007795 2.1e-114 416.8 445 50.6
Psat4g077320 Pisum sativum HOM05D006116 ORTHO05D007795 1.8e-110 403.7 361 59.0
CiPaw.12G058000 Carya illinoinensis HOM05D006116 ORTHO05D007795 5.9e-109 398.7 230 77.8
Pp3c14_16100 Physcomitrium patens HOM05D006116 ORTHO05D007795 5.9e-109 398.7 476 46.4
Pp3c14_16101 Physcomitrium patens HOM05D006116 ORTHO05D007795 5.9e-109 398.7 476 46.4
Pp3c2_10960 Physcomitrium patens HOM05D006116 ORTHO05D007795 6.5e-108 395.2 335 60.0
SMO356G0030 Selaginella moellendorffii HOM05D006116 ORTHO05D007795 4.2e-107 392.5 303 62.0
Zm00001eb313880 Zea mays HOM05D006116 ORTHO05D007795 1.8e-105 387.1 268 66.8
Mapoly0141s0023 Marchantia polymorpha HOM05D006116 ORTHO05D007795 4.0e-105 386.0 401 52.9
Migut.E00812 Erythranthe guttata HOM05D006116 ORTHO05D007795 9.7e-104 381.3 218 78.4
Haze_08334 Corylus avellana HOM05D006116 ORTHO05D007795 2.2e-103 380.2 349 58.2
BcaC06g33529 Brassica carinata HOM05D006116 ORTHO05D007795 4.8e-103 379.0 354 57.3
Zm00001eb091650 Zea mays HOM05D006116 ORTHO05D007795 8.8e-97 358.2 307 55.0
Zm00001eb319310 Zea mays HOM05D006116 ORTHO05D007795 5.6e-83 312.4 201 72.1
Dinv28896 Davidia involucrata HOM05D006116 ORTHO05D007795 1.2e-72 278.1 202 66.3
Zm00001eb129530 Zea mays HOM05D006116 ORTHO05D007795 1.5e-72 277.7 208 61.1
Zm00001eb391960 Zea mays HOM05D006116 ORTHO05D007795 1.5e-72 277.7 208 61.1
CBR_g27781 Chara braunii HOM05D006116 ORTHO05D007795 4.1e-70 269.6 266 48.5
Cre14.g631900 Chlamydomonas reinhardtii HOM05D006116 ORTHO05D007795 1.4e-65 254.6 278 42.4
Atru.chr9.1147 Acer truncatum HOM05D006116 ORTHO05D007795 4.7e-58 229.6 118 83.9
PSO732G0385 Papaver somniferum HOM05D006116 ORTHO05D007795 5.4e-54 216.1 254 50.0
Zm00001eb268110 Zea mays HOM05D006116 ORTHO05D007795 1.5e-48 198.0 192 51.0
Zm00001eb276710 Zea mays HOM05D006116 ORTHO05D007795 4.2e-38 163.3 134 55.2
Lsat_1_v5_gn_7_9401 Lactuca sativa HOM05D006116 ORTHO05D000290 1.0e-36 158.7 143 58.7
Ca_20974_v3 Cicer arietinum L. HOM05D006116 ORTHO05D007795 2.3e-36 157.5 117 62.4
TAR375G0859 Trochodendron aralioides HOM05D006116 ORTHO05D007795 5.5e-30 136.3 69 85.5
EL10Ac5g12217 Beta vulgaris HOM05D006116 ORTHO05D007795 6.0e-29 132.9 78 70.5
DCAR_005654 Daucus carota HOM05D006116 ORTHO05D007795 8.4e-23 112.5 68 73.5
CAN.G507.3 Capsicum annuum HOM05D006116 ORTHO05D007795 3.9e-20 103.6 74 60.8
CDE11G0087 Ceratophyllum demersum HOM05D006116 ORTHO05D007795 2.0e-16 91.3 52 76.9
TAR375G0706 Trochodendron aralioides HOM05D006116 ORTHO05D009946 9.4e-14 82.4 87 46.0
Atru.chr9.1146 Acer truncatum HOM05D006116 ORTHO05D007795 7.9e-13 79.3 103 48.5
CiPaw.12G058200 Carya illinoinensis HOM05D006116 ORTHO05D007795 6.3e-10 69.7 131 42.0
Aqoxy6G01690 Aquilegia oxysepala HOM05D006116 ORTHO05D007795 8.2e-10 69.3 120 30.8
Aqoxy7G03532 Aquilegia oxysepala HOM05D006116 ORTHO05D007795 2.6e-08 64.3 61 44.3


User provided reference genes

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