Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g20690 Fragaria vesca HOM05D006103 ORTHO05D007468 3.5e-162 575.1 331 100.0
FAN18G2558 Fragaria x ananassa HOM05D006103 ORTHO05D007468 8.6e-161 570.5 332 99.7
FAN08G0488 Fragaria x ananassa HOM05D006103 ORTHO05D007468 1.4e-158 563.1 331 97.0
FAN04G1103 Fragaria x ananassa HOM05D006103 ORTHO05D007468 1.3e-153 546.6 331 95.5
FAN13G0941 Fragaria x ananassa HOM05D006103 ORTHO05D007468 1.9e-152 542.7 331 94.9
RcHm_v2.0_Chr7g0206421 Rosa chinensis HOM05D006103 ORTHO05D007468 1.3e-148 530.0 334 92.5
Prupe.5G053300 Prunus persica HOM05D006103 ORTHO05D007468 1.9e-120 436.4 331 77.6
MD04G1054200 Malus domestica HOM05D006103 ORTHO05D007468 6.9e-118 427.9 344 73.8
CiPaw.11G084400 Carya illinoinensis HOM05D006103 ORTHO05D007468 4.9e-108 395.2 326 72.4
ClCG10G002100 Citrullus lanatus HOM05D006103 ORTHO05D007468 7.9e-106 387.9 328 70.4
TAR375G0262 Trochodendron aralioides HOM05D006103 ORTHO05D007468 5.1e-105 385.2 327 70.3
CANSAT21G0053 Cannabis sativa HOM05D006103 ORTHO05D007468 9.6e-104 380.9 320 70.9
Atru.chr9.1156 Acer truncatum HOM05D006103 ORTHO05D007468 1.6e-103 380.2 331 67.4
CsaV3_3G002190 Cucumis sativus L. HOM05D006103 ORTHO05D007468 1.6e-103 380.2 335 69.0
Haze_08348 Corylus avellana HOM05D006103 ORTHO05D007468 4.8e-103 378.6 323 71.8
Duzib205G0801 Durio zibethinus HOM05D006103 ORTHO05D007468 1.4e-102 377.1 331 69.8
Dinv25153 Davidia involucrata HOM05D006103 ORTHO05D007468 2.4e-102 376.3 327 65.4
Thecc.03G237900 Theobroma cacao HOM05D006103 ORTHO05D007468 2.4e-102 376.3 338 69.8
MELO3C013891.2 Cucumis melo HOM05D006103 ORTHO05D007468 3.1e-102 375.9 342 68.7
arahy.Tifrunner.gnm1.ann1.GKQN4T Arachis hypogaea HOM05D006103 ORTHO05D007468 2.9e-100 369.4 333 66.1
Sed0003222 Sechium edule HOM05D006103 ORTHO05D007468 2.9e-100 369.4 330 69.1
Sabra01G0119800 Salix brachista HOM05D006103 ORTHO05D007468 5.0e-100 368.6 326 67.5
Gohir.D08G182200 Gossypium hirsutum HOM05D006103 ORTHO05D007468 1.9e-99 366.7 331 68.6
Potri.001G149800 Populus trichocarpa HOM05D006103 ORTHO05D007468 1.9e-99 366.7 321 65.1
Gorai.004G191100 Gossypium raimondii HOM05D006103 ORTHO05D007468 3.2e-99 365.9 331 68.6
Lj4g0004061 Lotus japonicus HOM05D006103 ORTHO05D007468 3.2e-99 365.9 334 65.9
TWI60G1123 Tripterygium wilfordii HOM05D006103 ORTHO05D007468 5.5e-99 365.2 328 65.2
Manes.17G024600 Manihot esculenta HOM05D006103 ORTHO05D007468 1.6e-98 363.6 327 66.7
Ciclev10021261m.g Citrus clementina HOM05D006103 ORTHO05D007468 6.1e-98 361.7 331 65.6
Glyma.05G067000 Glycine max HOM05D006103 ORTHO05D007468 6.1e-98 361.7 329 66.6
VMungo0251G0880 Vigna mungo HOM05D006103 ORTHO05D007468 3.9e-97 359.0 329 66.6
QL12p008443 Quercus lobata HOM05D006103 ORTHO05D007468 5.1e-97 358.6 327 68.5
Eucgr.E00334 Eucalyptus grandis HOM05D006103 ORTHO05D007468 8.7e-97 357.8 340 63.8
Phvul.003G226000 Phaseolus vulgaris HOM05D006103 ORTHO05D007468 1.1e-96 357.5 325 67.7
Gohir.A08G162200 Gossypium hirsutum HOM05D006103 ORTHO05D007468 4.3e-96 355.5 331 67.4
Ca_22022_v3 Cicer arietinum L. HOM05D006103 ORTHO05D007468 2.2e-95 353.2 328 58.2
Lalb_Chr16g0386381 Lupinus albus HOM05D006103 ORTHO05D007468 4.8e-95 352.1 323 65.6
Actinidia03414 Actinidia chinensis HOM05D006103 ORTHO05D007468 8.2e-95 351.3 324 66.4
Cpa.g.sc98.70 Carica papaya HOM05D006103 ORTHO05D007468 1.1e-94 350.9 332 59.3
Cc08_g11160 Coffea canephora HOM05D006103 ORTHO05D007468 1.4e-94 350.5 324 63.6
CSS0016826 Camellia sinensis var. sinensis HOM05D006103 ORTHO05D007468 1.8e-94 350.1 321 65.1
CSS0027189 Camellia sinensis var. sinensis HOM05D006103 ORTHO05D007468 2.0e-93 346.7 319 64.9
PGR042G3635 Punica granatum HOM05D006103 ORTHO05D007468 2.6e-93 346.3 329 66.6
Oeu054287.1 Olea europaea HOM05D006103 ORTHO05D007468 3.4e-93 345.9 332 60.5
Sp2g11900 Schrenkiella parvula HOM05D006103 ORTHO05D007468 4.5e-93 345.5 332 64.2
Carub.0008s0066 Capsella rubella HOM05D006103 ORTHO05D007468 2.9e-92 342.8 331 63.1
Lj8A286T53 Lonicera japonica HOM05D006103 ORTHO05D007468 5.0e-92 342.0 322 62.7
Thhalv10000969m.g Eutrema salsugineum HOM05D006103 ORTHO05D007468 8.5e-92 341.3 332 60.8
DCAR_004514 Daucus carota HOM05D006103 ORTHO05D007468 1.1e-91 340.9 329 66.0
MSTRG.13771 Avicennia marina HOM05D006103 ORTHO05D007468 2.5e-91 339.7 323 61.6
Lsat_1_v5_gn_6_94780 Lactuca sativa HOM05D006103 ORTHO05D007468 2.7e-90 336.3 327 61.5
BraA02t08094Z Brassica rapa HOM05D006103 ORTHO05D007468 6.1e-90 335.1 326 58.9
SGA_v2.0_scaffold20G09256 Striga asiatica HOM05D006103 ORTHO05D007468 6.1e-90 335.1 326 61.0
Nitab4.5_0000506g0180 Nicotiana tabacum HOM05D006103 ORTHO05D007468 1.0e-89 334.3 335 61.5
BcaC03g16934 Brassica carinata HOM05D006103 ORTHO05D007468 1.4e-89 334.0 331 60.7
CAN.G422.12 Capsicum annuum HOM05D006103 ORTHO05D007468 1.4e-89 334.0 331 61.3
PSO063G5173 Papaver somniferum HOM05D006103 ORTHO05D007468 1.4e-89 334.0 322 65.2
AL8G11110 Arabidopsis lyrata HOM05D006103 ORTHO05D007468 2.3e-89 333.2 331 60.7
CARHR174300 Cardamine hirsuta HOM05D006103 ORTHO05D007468 3.0e-89 332.8 328 56.1
Lj8C280G0 Lonicera japonica HOM05D006103 ORTHO05D007468 3.0e-89 332.8 322 55.6
MBI04_g46823_MAGBIO Magnolia biondii HOM05D006103 ORTHO05D007468 3.9e-89 332.4 323 64.1
C02p48360 Brassica napus HOM05D006103 ORTHO05D007468 5.1e-89 332.0 331 60.1
BolC2t10867H Brassica oleracea HOM05D006103 ORTHO05D007468 5.1e-89 332.0 331 60.1
A02p30800 Brassica napus HOM05D006103 ORTHO05D007468 6.7e-89 331.6 326 58.3
Sopen06g021130 Solanum pennellii HOM05D006103 ORTHO05D007468 2.0e-88 330.1 331 61.6
Solyc06g060990.4 Solanum lycopersicum HOM05D006103 ORTHO05D007468 2.5e-88 329.7 329 61.7
AT5G47090 Arabidopsis thaliana HOM05D006103 ORTHO05D007468 9.7e-88 327.8 331 53.8
Medtr4g099190 Medicago truncatula HOM05D006103 ORTHO05D007468 1.7e-87 327.0 330 60.0
PGSC0003DMG400026583 Solanum tuberosum HOM05D006103 ORTHO05D007468 2.2e-87 326.6 329 62.6
Aqoxy3G02600 Aquilegia oxysepala HOM05D006103 ORTHO05D007468 4.8e-87 325.5 325 61.5
AUR62007192 Chenopodium quinoa HOM05D006103 ORTHO05D007468 6.3e-87 325.1 328 54.3
C02p28550 Brassica napus HOM05D006103 ORTHO05D007468 3.1e-86 322.8 331 59.2
BolC2t08897H Brassica oleracea HOM05D006103 ORTHO05D007468 3.1e-86 322.8 331 59.2
HanXRQChr03g0089621 Helianthus annuus HOM05D006103 ORTHO05D007468 3.1e-86 322.8 323 60.7
vmacro00388 Vaccinium macrocarpon HOM05D006103 ORTHO05D007468 6.9e-86 321.6 405 51.1
BcaC03g15262 Brassica carinata HOM05D006103 ORTHO05D007468 5.9e-85 318.5 331 58.6
CDE02G1890 Ceratophyllum demersum HOM05D006103 ORTHO05D007468 6.5e-84 315.1 328 54.9
GSVIVG01013285001 Vitis vinifera HOM05D006103 ORTHO05D007468 2.7e-82 309.7 188 80.3
unitig_699.g19773 Utricularia gibba HOM05D006103 ORTHO05D007468 7.9e-82 308.1 337 59.9
Aa31LG9G5870 Aethionema arabicum HOM05D006103 ORTHO05D007468 1.4e-81 307.4 360 58.3
EL10Ac5g12236 Beta vulgaris HOM05D006103 ORTHO05D007468 8.8e-81 304.7 331 57.4
SHI07660 Sapria himalayana HOM05D006103 ORTHO05D007468 1.5e-80 303.9 322 58.4
Hund11307 Selenicereus undatus HOM05D006103 ORTHO05D007468 8.2e-79 298.1 275 65.1
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 1.4e-78 297.4 299 52.8
Sc22g0001160 Simmondsia chinensis HOM05D006103 ORTHO05D007468 1.6e-77 293.9 196 73.0
CANSAT21G0160 Cannabis sativa HOM05D001479 ORTHO05D007468 5.9e-77 292.0 189 76.2
Dinv28889 Davidia involucrata HOM05D006103 ORTHO05D007468 1.0e-76 291.2 193 73.1
CANSAT21G1035 Cannabis sativa HOM05D006103 ORTHO05D007468 1.3e-76 290.8 184 77.2
Migut.E01036 Erythranthe guttata HOM05D006103 ORTHO05D007468 2.2e-76 290.0 325 52.9
Migut.E01310 Erythranthe guttata HOM05D006103 ORTHO05D007468 2.2e-76 290.0 325 52.9
Rhsim04G0176100 Rhododendron simsii HOM05D006103 ORTHO05D007468 5.0e-76 288.9 272 63.6
Os06g0139700 Oryza sativa ssp. japonica HOM05D006103 ORTHO05D007468 8.0e-74 281.6 324 56.8
Psat4g074520 Pisum sativum HOM05D006103 ORTHO05D007468 8.0e-74 281.6 326 50.3
SEGI_16450 Sequoiadendron giganteum HOM05D006103 ORTHO05D007468 4.0e-73 279.3 322 55.9
Zm00001eb377550 Zea mays HOM05D006103 ORTHO05D007468 4.0e-73 279.3 334 50.9
TPR.G25737 Trifolium pratense HOM05D006103 ORTHO05D007468 1.5e-72 277.3 338 54.7
ATR0665G401 Amborella trichopoda HOM05D006103 ORTHO05D007468 3.3e-72 276.2 322 57.1
Peaxi162Scf00190g00616 Petunia axillaris HOM05D006103 ORTHO05D007468 3.7e-71 272.7 273 64.5
BcaC07g39778 Brassica carinata HOM05D006103 ORTHO05D007468 4.5e-69 265.8 326 55.5
CDE11G0859 Ceratophyllum demersum HOM05D006103 ORTHO05D007468 8.5e-68 261.5 275 57.5
Nitab4.5_0013289g0030 Nicotiana tabacum HOM05D006103 ORTHO05D007468 5.9e-61 238.8 249 62.2
Pp3c16_2730 Physcomitrium patens HOM05D006103 ORTHO05D007468 1.0e-57 228.0 331 47.1
HPP92_014398 Vanilla planifolia HOM05D006103 ORTHO05D007468 1.4e-57 227.6 189 57.7
Hma1.2p1_1672F.1_g296810 Hydrangea macrophylla HOM05D006103 ORTHO05D007468 7.5e-56 221.9 215 62.3
BolC8t50609H Brassica oleracea HOM05D006103 ORTHO05D007468 8.3e-55 218.4 159 68.6
C08p30000 Brassica napus HOM05D006103 ORTHO05D007468 4.0e-49 199.5 145 69.0
AUR62018811 Chenopodium quinoa HOM05D006103 ORTHO05D007468 9.8e-48 194.9 219 49.8
Lj8A284T15 Lonicera japonica HOM05D006103 ORTHO05D007468 2.0e-45 187.2 136 67.6
SMO171G0121 Selaginella moellendorffii HOM05D006103 ORTHO05D007468 7.8e-45 185.3 332 42.5
AagrBONN_evm.TU.Sc2ySwM_368.2081 Anthoceros agrestis HOM05D006103 ORTHO05D007468 5.6e-43 179.1 313 41.2
CBR_g49667 Chara braunii HOM05D006103 ORTHO05D007468 8.6e-36 155.2 416 36.1
SHI06573 Sapria himalayana HOM05D006103 ORTHO05D007468 8.6e-28 128.6 125 54.4
AL8G11000 Arabidopsis lyrata HOM05D006103 ORTHO05D007468 2.5e-27 127.1 169 55.0
RcHm_v2.0_Chr4g0446321 Rosa chinensis HOM05D006103 ORTHO05D007468 3.3e-27 126.7 204 42.6
Actinidia02205 Actinidia chinensis HOM05D006103 ORTHO05D007468 1.5e-24 117.9 78 75.6
Cfa012348 Carpinus fangiana HOM05D006103 ORTHO05D007468 9.9e-24 115.2 83 72.3
MCO11G792 Micromonas commoda HOM05D006103 ORTHO05D007468 6.0e-21 105.9 346 27.5
RcHm_v2.0_Chr6g0308851 Rosa chinensis HOM05D006103 ORTHO05D007468 1.9e-19 100.9 54 94.4
Lj8A284T12 Lonicera japonica HOM05D006103 ORTHO05D007468 2.8e-18 97.1 140 42.9
COL.COLO4_06694 Corchorus olitorius HOM05D006103 ORTHO05D007468 4.0e-17 93.2 77 66.2
RcHm_v2.0_Chr6g0308841 Rosa chinensis HOM05D006103 ORTHO05D007468 3.4e-16 90.1 130 55.4
SHI06574 Sapria himalayana HOM05D006103 ORTHO05D007468 9.9e-16 88.6 163 35.6
Actinidia25920 Actinidia chinensis HOM05D006103 ORTHO05D007468 9.3e-14 82.0 81 58.0
Lj8C284T4 Lonicera japonica HOM05D006103 ORTHO05D007468 1.2e-13 81.6 55 63.6
Cre03.g170100 Chlamydomonas reinhardtii HOM05D006103 ORTHO05D007468 2.7e-13 80.5 144 37.5
CARHR174410 Cardamine hirsuta HOM05D006103 ORTHO05D007468 2.3e-12 77.4 46 78.3
Rhsim04G0176300 Rhododendron simsii HOM05D006103 ORTHO05D007468 4.8e-10 69.7 60 61.7
Carub.0008s0069 Capsella rubella HOM05D006103 ORTHO05D007468 6.2e-10 69.3 54 68.5
Lj8A280T20 Lonicera japonica HOM05D006103 ORTHO05D007468 7.6e-08 62.4 44 70.5


User provided reference genes

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