Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g19410 Fragaria vesca HOM05D006677 ORTHO05D008348 0.0e+00 1566.2 795 100.0
FAN18G1193 Fragaria x ananassa HOM05D006677 ORTHO05D008348 0.0e+00 1546.6 795 98.6
FAN08G3018 Fragaria x ananassa HOM05D006677 ORTHO05D008348 0.0e+00 1528.1 795 97.5
FAN04G1892 Fragaria x ananassa HOM05D006677 ORTHO05D008348 0.0e+00 1527.3 795 96.7
FAN13G0013 Fragaria x ananassa HOM05D006677 ORTHO05D008348 0.0e+00 1522.7 796 96.7
RcHm_v2.0_Chr7g0203921 Rosa chinensis HOM05D006677 ORTHO05D008348 0.0e+00 1438.7 793 90.3
MD06G1053300 Malus domestica HOM05D006677 ORTHO05D008348 0.0e+00 1187.2 812 74.4
Prupe.5G065400 Prunus persica HOM05D006677 ORTHO05D008348 0.0e+00 1167.1 800 74.9
MD04G1060300 Malus domestica HOM05D006677 ORTHO05D008348 0.0e+00 1163.3 812 73.5
CANSAT21G0792 Cannabis sativa HOM05D006677 ORTHO05D008348 0.0e+00 1078.9 801 67.7
COL.COLO4_37128 Corchorus olitorius HOM05D006677 ORTHO05D008348 4.6e-301 1037.7 799 65.2
Cfa012688 Carpinus fangiana HOM05D006677 ORTHO05D008348 2.7e-293 1011.9 795 65.8
Thecc.03G248200 Theobroma cacao HOM05D006677 ORTHO05D008348 6.6e-292 1007.3 792 64.5
Haze_07944 Corylus avellana HOM05D006677 ORTHO05D008348 2.6e-288 995.3 854 61.4
Gorai.008G233700 Gossypium raimondii HOM05D006677 ORTHO05D008348 1.7e-287 992.6 790 63.4
Gohir.D12G218100 Gossypium hirsutum HOM05D006677 ORTHO05D008348 2.4e-286 988.8 790 63.3
Duzib068G0477 Durio zibethinus HOM05D006677 ORTHO05D008348 2.1e-285 985.7 792 63.4
Gohir.A12G215500 Gossypium hirsutum HOM05D006677 ORTHO05D008348 5.2e-281 971.1 790 62.7
Hma1.2p1_0316F.1_g122840 Hydrangea macrophylla HOM05D006677 ORTHO05D008348 3.5e-277 958.4 796 61.2
QL12p011426 Quercus lobata HOM05D006677 ORTHO05D008348 5.1e-276 954.5 851 59.7
TWI60G0317 Tripterygium wilfordii HOM05D006677 ORTHO05D008348 1.5e-275 953.0 787 61.1
CiPaw.12G050300 Carya illinoinensis HOM05D006677 ORTHO05D008348 2.5e-275 952.2 806 62.7
PGR031G0681 Punica granatum HOM05D006677 ORTHO05D008348 2.8e-274 948.7 792 60.4
Manes.02G041400 Manihot esculenta HOM05D006677 ORTHO05D008348 1.8e-273 946.0 793 61.4
Duzib205G2017 Durio zibethinus HOM05D006677 ORTHO05D008348 1.4e-270 936.4 792 61.0
Lj2C223G6 Lonicera japonica HOM05D006677 ORTHO05D008348 1.9e-270 936.0 800 60.6
TAR374G0600 Trochodendron aralioides HOM05D006677 ORTHO05D008348 7.1e-270 934.1 802 59.4
Potri.001G155800 Populus trichocarpa HOM05D006677 ORTHO05D008348 6.0e-269 931.0 800 61.1
CSS0025591 Camellia sinensis var. sinensis HOM05D006677 ORTHO05D008348 7.8e-269 930.6 794 60.1
Atru.chr9.1276 Acer truncatum HOM05D006677 ORTHO05D008348 5.1e-268 927.9 802 59.6
Solyc08g078440.3 Solanum lycopersicum HOM05D006677 ORTHO05D008348 5.6e-267 924.5 789 59.3
Ciclev10018892m.g Citrus clementina HOM05D006677 ORTHO05D008348 1.6e-266 922.9 804 59.5
Sopen08g026930 Solanum pennellii HOM05D006677 ORTHO05D008348 3.6e-266 921.8 789 59.1
Nitab4.5_0001381g0100 Nicotiana tabacum HOM05D006677 ORTHO05D008348 2.0e-264 916.0 790 59.0
CAN.G1178.20 Capsicum annuum HOM05D006677 ORTHO05D008348 2.7e-261 905.6 789 58.3
Peaxi162Scf00209g00130 Petunia axillaris HOM05D006677 ORTHO05D008348 7.9e-261 904.0 790 59.1
Rhsim07G0111300 Rhododendron simsii HOM05D006677 ORTHO05D008348 1.3e-260 903.3 792 60.1
THA.LOC104806670 Tarenaya hassleriana HOM05D006677 ORTHO05D008348 1.3e-260 903.3 790 58.5
Nn6g33880 Nelumbo nucifera HOM05D006677 ORTHO05D008348 3.9e-260 901.7 804 57.8
CSS0006614 Camellia sinensis var. sinensis HOM05D006677 ORTHO05D008348 6.7e-260 901.0 794 58.7
vmacro14066 Vaccinium macrocarpon HOM05D006677 ORTHO05D008348 2.8e-258 895.6 792 59.1
AUR62007111 Chenopodium quinoa HOM05D006677 ORTHO05D008348 4.8e-258 894.8 796 57.3
Rhsim07G0110800 Rhododendron simsii HOM05D006677 ORTHO05D008348 6.9e-257 891.0 813 58.5
Hund14577 Selenicereus undatus HOM05D006677 ORTHO05D008348 6.9e-257 891.0 791 57.5
Cc08_g12180 Coffea canephora HOM05D006677 ORTHO05D008348 2.0e-256 889.4 792 55.9
Sc22g0000980 Simmondsia chinensis HOM05D006677 ORTHO05D008348 5.8e-256 887.9 794 57.6
AL8G10640 Arabidopsis lyrata HOM05D006677 ORTHO05D008348 1.0e-255 887.1 796 56.5
CARHR173970 Cardamine hirsuta HOM05D006677 ORTHO05D008348 1.3e-255 886.7 796 56.0
AUR62019973 Chenopodium quinoa HOM05D006677 ORTHO05D008348 1.7e-255 886.3 796 57.2
MSTRG.12123 Avicennia marina HOM05D006677 ORTHO05D008348 1.6e-253 879.8 789 57.0
Lalb_Chr05g0221161 Lupinus albus HOM05D006677 ORTHO05D008348 5.1e-252 874.8 793 57.4
arahy.Tifrunner.gnm1.ann1.WU4RWF Arachis hypogaea HOM05D006677 ORTHO05D008348 1.9e-251 872.8 815 56.2
arahy.Tifrunner.gnm1.ann1.IBE8NF Arachis hypogaea HOM05D006677 ORTHO05D008348 6.2e-250 867.8 818 56.0
Sp2g12115 Schrenkiella parvula HOM05D006677 ORTHO05D008348 5.3e-249 864.8 798 55.3
Carub.0008s0038 Capsella rubella HOM05D006677 ORTHO05D008348 9.0e-249 864.0 796 55.5
AT5G47400 Arabidopsis thaliana HOM05D006677 ORTHO05D008348 1.2e-248 863.6 801 55.7
EL10Ac5g12357 Beta vulgaris HOM05D006677 ORTHO05D008348 2.0e-248 862.8 790 56.7
SGA_v2.0_scaffold104G30177 Striga asiatica HOM05D006677 ORTHO05D008348 3.4e-248 862.1 812 53.8
Aqoxy7G00821 Aquilegia oxysepala HOM05D006677 ORTHO05D008348 4.5e-248 861.7 801 55.2
Thhalv10000783m.g Eutrema salsugineum HOM05D006677 ORTHO05D008348 7.6e-248 860.9 796 55.4
Dinv21656 Davidia involucrata HOM05D006677 ORTHO05D008348 1.7e-247 859.8 632 67.4
Ah.12g054330 Amaranthus hybridus HOM05D006677 ORTHO05D008348 2.2e-247 859.4 791 56.3
C07p31040 Brassica napus HOM05D006677 ORTHO05D008348 6.5e-247 857.8 797 55.7
BolC7t43648H Brassica oleracea HOM05D006677 ORTHO05D008348 8.4e-247 857.4 795 55.8
Nitab4.5_0002289g0120 Nicotiana tabacum HOM05D006677 ORTHO05D008348 1.1e-246 857.1 795 56.2
BcaC06g34255 Brassica carinata HOM05D006677 ORTHO05D008348 3.2e-246 855.5 798 55.6
DCAR_004989 Daucus carota HOM05D006677 ORTHO05D008348 1.8e-244 849.7 792 54.7
Migut.A01134 Erythranthe guttata HOM05D006677 ORTHO05D008348 1.8e-244 849.7 808 55.6
Lj4g0000262 Lotus japonicus HOM05D006677 ORTHO05D008348 1.8e-244 849.7 798 56.4
Ca_21980_v3 Cicer arietinum L. HOM05D006677 ORTHO05D008348 1.6e-242 843.2 805 55.3
HanXRQChr16g0501081 Helianthus annuus HOM05D006677 ORTHO05D008348 2.8e-242 842.4 798 55.4
SalBow6G5281 Salvia bowleyana HOM05D006677 ORTHO05D008348 4.8e-242 841.6 845 52.4
Manes.01G083200 Manihot esculenta HOM05D006677 ORTHO05D008348 8.2e-242 840.9 793 55.4
A06p45110 Brassica napus HOM05D006677 ORTHO05D008348 2.2e-239 832.8 796 55.0
Glyma.17G143800 Glycine max HOM05D006677 ORTHO05D008348 1.4e-238 830.1 805 56.8
Aa31sc151G40 Aethionema arabicum HOM05D006677 ORTHO05D008348 1.9e-238 829.7 760 55.7
BraA06t27381Z Brassica rapa HOM05D006677 ORTHO05D008348 1.7e-234 816.6 794 54.3
Medtr4g100700 Medicago truncatula HOM05D006677 ORTHO05D008348 8.2e-234 814.3 806 54.5
Actinidia26803 Actinidia chinensis HOM05D006677 ORTHO05D008348 1.2e-232 810.4 637 63.4
Lsat_1_v5_gn_6_18041 Lactuca sativa HOM05D006677 ORTHO05D008348 1.1e-225 787.3 798 51.6
Phvul.003G222500 Phaseolus vulgaris HOM05D006677 ORTHO05D008348 6.1e-221 771.5 802 54.1
VMungo0251G0668 Vigna mungo HOM05D006677 ORTHO05D008348 1.8e-220 770.0 801 53.4
ECA233G6125 Erigeron canadensis HOM05D006677 ORTHO05D008348 2.0e-219 766.5 748 54.3
HanXRQChr08g0227751 Helianthus annuus HOM05D006677 ORTHO05D008348 5.7e-219 765.0 793 52.1
Psat4g072920 Pisum sativum HOM05D006677 ORTHO05D008348 2.6e-216 756.1 791 52.1
CDE11G0086 Ceratophyllum demersum HOM05D006677 ORTHO05D008348 2.6e-211 739.6 786 48.9
BcaC06g31390 Brassica carinata HOM05D006677 ORTHO05D008348 5.0e-207 725.3 664 56.0
Oeu017057.2 Olea europaea HOM05D006677 ORTHO05D008348 5.0e-207 725.3 835 49.9
BcaC06g31392 Brassica carinata HOM05D006677 ORTHO05D008348 1.6e-205 720.3 783 50.7
Sabra01G0125500 Salix brachista HOM05D006677 ORTHO05D008348 2.7e-200 703.0 647 58.4
HPP92_022463 Vanilla planifolia HOM05D006677 ORTHO05D008348 1.9e-198 696.8 809 46.5
Eucgr.D02100 Eucalyptus grandis HOM05D006677 ORTHO05D008348 1.2e-195 687.6 581 61.1
ATR0057G118 Amborella trichopoda HOM05D006677 ORTHO05D008348 1.5e-166 590.9 807 43.1
Glyma.05G062000 Glycine max HOM05D006677 ORTHO05D008348 7.6e-163 578.6 607 53.0
Zm00001eb000330 Zea mays HOM05D006677 ORTHO05D008348 1.8e-140 504.2 801 39.5
Actinidia10841 Actinidia chinensis HOM05D006677 ORTHO05D008348 3.3e-126 456.8 791 39.1
unitig_21.g20314 Utricularia gibba HOM05D006677 ORTHO05D008348 1.1e-113 415.2 809 35.1
Pp3c19_23280 Physcomitrium patens HOM05D006677 ORTHO05D008348 1.0e-106 392.1 848 33.7
TPR.G37689 Trifolium pratense HOM05D006677 ORTHO05D008348 1.0e-90 339.0 295 59.3
TPR.G36090 Trifolium pratense HOM05D006677 ORTHO05D008348 5.0e-90 336.7 420 45.5
GSVIVG01006275001 Vitis vinifera HOM05D006677 ORTHO05D000005 1.4e-87 328.6 250 68.0
AagrBONN_evm.TU.Sc2ySwM_228.2440 Anthoceros agrestis HOM05D006677 ORTHO05D008348 1.8e-87 328.2 861 30.1
GSVIVG01006276001 Vitis vinifera HOM05D006677 ORTHO05D008348 2.8e-85 320.9 259 61.4
Cpa.g.sc3684.1 Carica papaya HOM05D006677 ORTHO05D008348 6.3e-85 319.7 249 65.1
DCAR_004986 Daucus carota HOM05D006677 ORTHO05D008348 9.5e-81 305.8 283 53.7
DCAR_004979 Daucus carota HOM05D006677 ORTHO05D008348 2.1e-80 304.7 283 54.1
TAR365G0661 Trochodendron aralioides HOM05D006677 ORTHO05D008348 5.8e-70 270.0 271 52.0
TAR633G2042 Trochodendron aralioides HOM05D006677 ORTHO05D008348 9.2e-52 209.5 181 58.0
DCAR_004983 Daucus carota HOM05D006677 ORTHO05D008348 8.4e-45 186.4 200 47.5
CBR_g16835 Chara braunii HOM05D000019 ORTHO05D000048 2.7e-43 181.4 1004 22.7
DCAR_004974 Daucus carota HOM05D006677 ORTHO05D008348 1.0e-42 179.5 205 46.3
TAR629G1120 Trochodendron aralioides HOM05D006677 ORTHO05D008348 9.0e-39 166.4 145 55.9
CAN.G26.36 Capsicum annuum HOM05D006677 ORTHO05D008348 1.2e-35 156.0 176 44.9
Os10g0560500 Oryza sativa ssp. japonica HOM05D006677 ORTHO05D008348 5.1e-34 150.6 296 33.8
DCAR_004984 Daucus carota HOM05D006677 ORTHO05D008348 4.9e-29 134.0 87 71.3
MCO13G224 Micromonas commoda HOM05D006677 ORTHO05D008348 1.6e-24 119.0 836 22.1
DCAR_004972 Daucus carota HOM05D006677 ORTHO05D008348 3.4e-14 84.7 113 45.1
Cre06.g278126 Chlamydomonas reinhardtii HOM05D006677 ORTHO05D008348 2.9e-13 81.6 186 32.8
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 2.1e-11 75.5 46 71.7
CAN.G1178.24 Capsicum annuum HOM05D006677 ORTHO05D008348 6.7e-10 70.5 50 62.0
ECA233G4789 Erigeron canadensis HOM05D006677 ORTHO05D008348 2.0e-06 58.9 49 57.1
ECA234G1619 Erigeron canadensis HOM05D000206 ORTHO05D000232 2.6e-06 58.5 48 58.3


User provided reference genes

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