Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g19211 Fragaria vesca HOM05D006032 ORTHO05D197553 2.9e-108 395.2 191 100.0
FvH4_7g15110 Fragaria vesca HOM05D006032 ORTHO05D007544 1.3e-12 77.4 41 92.7
FAN03G1341 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.3e-12 77.4 41 92.7
FAN10G0977 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.3e-12 77.4 41 92.7
FAN10G2244 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.3e-12 77.4 41 92.7
RcHm_v2.0_Chr1g0357301 Rosa chinensis HOM05D006032 ORTHO05D007544 1.7e-12 77.0 51 80.4
FAN06G2046 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.9e-12 76.3 41 90.2
FAN06G3864 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.9e-12 76.3 41 90.2
Prupe.2G175800 Prunus persica HOM05D006032 ORTHO05D007544 9.4e-11 71.2 41 82.9
MD01G1069800 Malus domestica HOM05D006032 ORTHO05D007544 6.1e-10 68.6 53 67.9
MD07G1132700 Malus domestica HOM05D006032 ORTHO05D007544 6.1e-10 68.6 53 67.9
Psat3g107160 Pisum sativum HOM05D006032 ORTHO05D007544 3.4e-08 62.8 52 65.4
GSVIVG01027006001 Vitis vinifera HOM05D006032 ORTHO05D007544 3.4e-08 62.8 45 71.1
MSTRG.20857 Avicennia marina HOM05D006032 ORTHO05D007544 4.4e-08 62.4 53 64.2
CANSAT56G0440 Cannabis sativa HOM05D006032 ORTHO05D007544 4.4e-08 62.4 52 65.4
QL04p055082 Quercus lobata HOM05D006032 ORTHO05D007544 4.4e-08 62.4 51 62.7
CiPaw.01G065600 Carya illinoinensis HOM05D006032 ORTHO05D007544 5.7e-08 62.0 52 63.5
Haze_15552 Corylus avellana HOM05D006032 ORTHO05D007544 5.7e-08 62.0 52 63.5
Nn1g01650 Nelumbo nucifera HOM05D006032 ORTHO05D007544 7.5e-08 61.6 45 68.9
Lj7A509T108 Lonicera japonica HOM05D006032 ORTHO05D007544 9.8e-08 61.2 39 74.4
EL10Ac1g00366 Beta vulgaris HOM05D006032 ORTHO05D007544 1.3e-07 60.8 42 78.6
Cfa003882 Carpinus fangiana HOM05D006032 ORTHO05D007544 1.3e-07 60.8 45 66.7
Cc02_g38440 Coffea canephora HOM05D006032 ORTHO05D007544 1.7e-07 60.5 43 74.4
Glyma.09G255500 Glycine max HOM05D006032 ORTHO05D007544 1.7e-07 60.5 52 59.6
Sed0022476 Sechium edule HOM05D006032 ORTHO05D007544 1.7e-07 60.5 52 63.5
CsaV3_3G008690 Cucumis sativus L. HOM05D006032 ORTHO05D007544 2.2e-07 60.1 45 66.7
Glyma.18G237400 Glycine max HOM05D006032 ORTHO05D007544 2.2e-07 60.1 52 59.6
Aqoxy7G00233 Aquilegia oxysepala HOM05D006032 ORTHO05D007544 2.8e-07 59.7 42 73.8
Ciclev10021696m.g Citrus clementina HOM05D006032 ORTHO05D007544 3.7e-07 59.3 53 58.5
PGR031G1164 Punica granatum HOM05D006032 ORTHO05D007544 3.7e-07 59.3 45 66.7
AUR62004402 Chenopodium quinoa HOM05D006032 ORTHO05D007544 4.8e-07 58.9 52 63.5
AUR62022608 Chenopodium quinoa HOM05D006032 ORTHO05D007544 4.8e-07 58.9 52 63.5
MELO3C006088.2 Cucumis melo HOM05D006032 ORTHO05D007544 4.8e-07 58.9 52 59.6
Lj4g0026145 Lotus japonicus HOM05D006032 ORTHO05D007544 4.8e-07 58.9 43 69.8
Lalb_Chr19g0126911 Lupinus albus HOM05D006032 ORTHO05D007544 4.8e-07 58.9 42 71.4
Medtr7g078800 Medicago truncatula HOM05D006032 ORTHO05D007544 4.8e-07 58.9 42 71.4
Dinv32511 Davidia involucrata HOM05D006032 ORTHO05D007544 6.3e-07 58.5 45 64.4
ECA236G4677 Erigeron canadensis HOM05D006032 ORTHO05D007544 6.3e-07 58.5 45 66.7
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 8.3e-07 58.2 52 63.5
ATR0661G584 Amborella trichopoda HOM05D006032 ORTHO05D007544 8.3e-07 58.2 45 62.2
Sopen09g002430 Solanum pennellii HOM05D006032 ORTHO05D007544 8.3e-07 58.2 43 72.1
Atru.chr5.551 Acer truncatum HOM05D006032 ORTHO05D007544 1.1e-06 57.8 52 59.6
CSS0027447 Camellia sinensis var. sinensis HOM05D006032 ORTHO05D007544 1.1e-06 57.8 42 73.8
ClCG05G001320 Citrullus lanatus HOM05D006032 ORTHO05D007544 1.1e-06 57.8 52 59.6
THA.LOC104817034 Tarenaya hassleriana HOM05D006032 ORTHO05D007544 1.1e-06 57.8 45 66.7
Thecc.01G353900 Theobroma cacao HOM05D006032 ORTHO05D007544 1.1e-06 57.8 45 64.4
TWI59G0434 Tripterygium wilfordii HOM05D006032 ORTHO05D007544 1.1e-06 57.8 52 57.7
COL.COLO4_12764 Corchorus olitorius HOM05D006032 ORTHO05D007544 1.4e-06 57.4 51 54.9
Migut.B01790 Erythranthe guttata HOM05D006032 ORTHO05D007544 1.4e-06 57.4 47 63.8
Hma1.2p1_2961F.1_g330870 Hydrangea macrophylla HOM05D006032 ORTHO05D007544 1.4e-06 57.4 53 58.5
Nitab4.5_0002682g0080 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.8e-06 57.0 43 69.8
Nitab4.5_0006802g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.8e-06 57.0 43 69.8
PSO478G3538 Papaver somniferum HOM05D006032 ORTHO05D007544 1.8e-06 57.0 30 90.0
PSO782G5129 Papaver somniferum HOM05D006032 ORTHO05D007544 1.8e-06 57.0 30 90.0
Phvul.008G059200 Phaseolus vulgaris HOM05D006032 ORTHO05D007544 1.8e-06 57.0 56 58.9
TPR.G22296 Trifolium pratense HOM05D006032 ORTHO05D007544 1.8e-06 57.0 52 59.6
TAR629G0912 Trochodendron aralioides HOM05D006032 ORTHO05D007544 1.8e-06 57.0 30 90.0
arahy.Tifrunner.gnm1.ann1.S0M071 Arachis hypogaea HOM05D006032 ORTHO05D007544 2.4e-06 56.6 42 66.7
arahy.Tifrunner.gnm1.ann1.XQ5AKE Arachis hypogaea HOM05D006032 ORTHO05D007544 2.4e-06 56.6 42 66.7
BcaB01g02282 Brassica carinata HOM05D006032 ORTHO05D007544 2.4e-06 56.6 55 54.5
Thhalv10028885m.g Eutrema salsugineum HOM05D006032 ORTHO05D007544 2.4e-06 56.6 56 55.4
SalBow3G2277 Salvia bowleyana HOM05D006032 ORTHO05D007544 2.4e-06 56.6 45 66.7
VMungo1383G0296 Vigna mungo HOM05D006032 ORTHO05D007544 2.4e-06 56.6 57 57.9
AL6G52090 Arabidopsis lyrata HOM05D006032 ORTHO05D007544 3.1e-06 56.2 55 56.4
BcaB01g02152 Brassica carinata HOM05D006032 ORTHO05D007544 3.1e-06 56.2 55 54.5
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 3.1e-06 56.2 45 64.4
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 3.1e-06 56.2 45 64.4
Ca_00819_v3 Cicer arietinum L. HOM05D006032 ORTHO05D007544 3.1e-06 56.2 42 66.7
DCAR_006944 Daucus carota HOM05D006032 ORTHO05D007544 3.1e-06 56.2 39 69.2
Peaxi162Scf00815g00338 Petunia axillaris HOM05D006032 ORTHO05D007544 3.1e-06 56.2 43 69.8
Sp6g00830 Schrenkiella parvula HOM05D006032 ORTHO05D007544 3.1e-06 56.2 56 55.4
CAN.G1091.3 Capsicum annuum HOM05D006032 ORTHO05D007544 4.1e-06 55.8 43 69.8
Eucgr.D02319 Eucalyptus grandis HOM05D006032 ORTHO05D007544 4.1e-06 55.8 52 59.6
Lsat_1_v5_gn_7_3801 Lactuca sativa HOM05D006032 ORTHO05D007544 4.1e-06 55.8 42 69.0
Manes.01G253200 Manihot esculenta HOM05D006032 ORTHO05D007544 4.1e-06 55.8 42 71.4
Nitab4.5_0000681g0060 Nicotiana tabacum HOM05D006032 ORTHO05D007544 4.1e-06 55.8 43 67.4
PGSC0003DMG400001748 Solanum tuberosum HOM05D006032 ORTHO05D007544 4.1e-06 55.8 43 69.8
BcaC01g06855 Brassica carinata HOM05D006032 ORTHO05D007544 5.4e-06 55.5 55 54.5
BcaC04g24141 Brassica carinata HOM05D006032 ORTHO05D007544 5.4e-06 55.5 55 54.5
C03p38990 Brassica napus HOM05D006032 ORTHO05D007544 5.4e-06 55.5 55 54.5
BolC3t16171H Brassica oleracea HOM05D006032 ORTHO05D007544 5.4e-06 55.5 55 54.5
Rhsim12G0138500 Rhododendron simsii HOM05D006032 ORTHO05D007544 5.4e-06 55.5 42 71.4
CARHR249010 Cardamine hirsuta HOM05D006032 ORTHO05D007544 7.0e-06 55.1 55 54.5
Cpa.g.sc184.23 Carica papaya HOM05D006032 ORTHO05D007544 7.0e-06 55.1 45 60.0
HanXRQChr06g0170291 Helianthus annuus HOM05D006032 ORTHO05D007544 7.0e-06 55.1 43 69.8
AT4G01310 Arabidopsis thaliana HOM05D006032 ORTHO05D007544 9.1e-06 54.7 55 54.5
Carub.0006s3637 Capsella rubella HOM05D006032 ORTHO05D007544 9.1e-06 54.7 55 54.5
Sc01g0003280 Simmondsia chinensis HOM05D006032 ORTHO05D007544 9.1e-06 54.7 52 55.8
SGA_v2.0_scaffold95G28814 Striga asiatica HOM05D006032 ORTHO05D007544 9.1e-06 54.7 44 65.9


User provided reference genes

Program Settings