Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 1.4e-136 489.6 246 100.0
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.2e-135 486.5 246 99.2
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.2e-135 486.5 246 99.2
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.2e-135 486.5 246 99.2
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.0e-134 481.9 246 98.4
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.3e-132 476.5 245 97.1
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.1e-132 475.7 246 97.6
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 6.2e-132 474.2 246 96.3
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 6.9e-107 391.0 247 80.2
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 9.0e-107 390.6 248 79.8
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 3.3e-101 372.1 249 77.1
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 2.8e-100 369.0 249 76.3
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 1.1e-99 367.1 246 77.6
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 4.1e-99 365.2 246 77.2
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 9.1e-99 364.0 248 76.2
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 1.2e-98 363.6 247 76.5
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 4.5e-98 361.7 248 75.0
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 5.9e-98 361.3 247 76.1
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 5.9e-98 361.3 250 75.6
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.3e-97 360.1 247 75.7
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 3.8e-97 358.6 249 74.7
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 3.8e-97 358.6 247 75.3
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 2.1e-95 352.8 248 75.4
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 2.1e-95 352.8 247 73.7
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 2.1e-95 352.8 247 73.7
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 6.1e-95 351.3 246 73.6
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 1.0e-94 350.5 247 73.7
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.0e-94 350.5 247 72.1
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 1.4e-94 350.1 250 74.0
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 1.8e-94 349.7 246 73.2
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 2.3e-94 349.4 253 71.5
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 5.1e-94 348.2 246 72.8
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 6.7e-94 347.8 247 71.7
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 6.7e-94 347.8 247 71.7
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 8.8e-94 347.4 247 72.9
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 8.8e-94 347.4 247 72.9
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 1.1e-93 347.1 252 72.2
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 1.5e-93 346.7 246 72.8
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 2.0e-93 346.3 247 72.5
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 3.3e-93 345.5 247 72.5
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 7.4e-93 344.4 255 69.4
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 1.3e-92 343.6 250 72.4
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 2.8e-92 342.4 245 71.8
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 4.8e-92 341.7 264 68.2
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 6.3e-92 341.3 246 71.1
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 1.8e-91 339.7 247 71.7
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.8e-91 339.7 248 72.2
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 2.6e-90 335.9 248 71.8
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 3.5e-90 335.5 247 70.4
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 4.5e-90 335.1 249 71.5
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 4.5e-90 335.1 249 71.5
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 5.9e-90 334.7 248 71.4
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 7.7e-90 334.3 247 70.0
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 7.7e-90 334.3 250 70.0
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 1.0e-89 334.0 247 71.3
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 1.3e-89 333.6 248 72.2
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 1.7e-89 333.2 245 72.7
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 2.2e-89 332.8 250 68.0
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 2.2e-89 332.8 249 71.5
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 2.2e-89 332.8 251 69.7
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 1.1e-88 330.5 248 70.2
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 2.5e-88 329.3 245 70.6
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 3.2e-88 328.9 247 69.6
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 3.2e-88 328.9 250 71.2
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 1.6e-87 326.6 253 70.0
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 2.1e-87 326.2 250 70.4
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 2.7e-87 325.9 248 68.1
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 4.7e-87 325.1 252 68.7
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 4.7e-87 325.1 252 69.4
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 8.8e-86 320.9 248 69.0
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 1.1e-85 320.5 257 67.3
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 1.1e-85 320.5 247 67.2
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 1.5e-85 320.1 248 68.1
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 2.0e-85 319.7 236 71.2
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 2.6e-85 319.3 312 57.1
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 4.4e-85 318.5 243 67.1
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 4.4e-85 318.5 248 68.1
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 9.7e-85 317.4 217 72.4
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 2.2e-84 316.2 245 67.8
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 2.2e-84 316.2 247 66.4
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 6.3e-84 314.7 243 69.1
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 8.2e-84 314.3 243 67.5
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 8.2e-84 314.3 241 68.0
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 3.1e-83 312.4 247 66.0
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 4.1e-83 312.0 243 65.4
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 4.1e-83 312.0 243 65.0
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 9.1e-83 310.8 245 66.1
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 9.1e-83 310.8 247 65.2
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 9.1e-83 310.8 247 65.2
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 9.1e-83 310.8 247 65.6
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 1.2e-82 310.5 246 65.4
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 1.6e-82 310.1 245 65.7
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 3.5e-82 308.9 247 65.2
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 3.5e-82 308.9 252 64.3
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 3.5e-82 308.9 243 65.4
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 3.5e-82 308.9 244 66.8
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 4.5e-82 308.5 247 65.2
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 7.7e-82 307.8 236 66.9
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 3.8e-81 305.4 250 65.2
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 5.0e-81 305.1 243 65.0
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 5.0e-81 305.1 232 71.1
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 8.5e-81 304.3 237 67.9
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 1.5e-80 303.5 248 64.9
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 1.5e-80 303.5 321 53.9
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 4.2e-80 302.0 246 65.0
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 7.2e-80 301.2 256 65.2
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 9.4e-80 300.8 246 64.6
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 1.2e-79 300.4 258 64.0
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 4.7e-79 298.5 251 65.3
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 8.0e-79 297.7 244 65.6
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 1.4e-78 297.0 259 64.5
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 1.4e-78 297.0 237 68.4
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 1.4e-78 297.0 253 64.0
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 1.5e-77 293.5 251 62.2
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 2.0e-77 293.1 238 66.0
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 2.0e-77 293.1 244 64.8
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 2.6e-77 292.7 256 64.5
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 5.7e-77 291.6 214 68.7
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 7.5e-77 291.2 266 63.2
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 9.8e-77 290.8 200 72.0
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 4.8e-76 288.5 245 62.9
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 4.8e-76 288.5 245 62.9
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 4.8e-76 288.5 245 62.9
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.1e-75 287.3 244 61.9
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 2.4e-75 286.2 241 65.1
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 7.0e-75 284.6 245 62.4
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.6e-74 283.5 216 66.7
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 1.6e-74 283.5 227 66.1
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 5.0e-73 278.5 253 59.7
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 2.5e-72 276.2 251 59.8
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 6.1e-71 271.6 249 58.2
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 9.8e-69 264.2 386 44.0
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 1.8e-67 260.0 249 56.6
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 2.3e-65 253.1 255 54.9
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 1.6e-63 246.9 248 56.9
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 2.1e-63 246.5 246 55.3
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 3.6e-63 245.7 232 55.6
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 1.5e-61 240.4 237 56.1
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 4.4e-61 238.8 151 76.2
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 2.9e-60 236.1 252 54.4
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.7e-57 226.9 148 72.3
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 6.6e-57 224.9 247 53.0
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 2.0e-53 213.4 136 75.0
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 2.4e-51 206.5 215 54.9
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 4.1e-51 205.7 168 64.3
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.6e-50 203.8 168 63.1
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.7e-44 183.7 194 54.6
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 7.1e-43 178.3 113 75.2
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 2.1e-42 176.8 117 75.2
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 3.5e-42 176.0 269 41.3
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 3.0e-41 172.9 287 41.1
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 4.9e-36 155.6 134 69.4
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 3.2e-35 152.9 128 64.8
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 4.3e-32 142.5 292 36.0
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 2.6e-29 133.3 98 71.4
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 2.9e-28 129.8 276 35.1
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 2.8e-23 113.2 102 58.8
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 4.8e-23 112.5 95 58.9
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 1.4e-22 110.9 91 56.0
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 1.2e-21 107.8 79 65.8
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 5.8e-21 105.5 74 73.0
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 2.4e-19 100.1 74 68.9
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 9.3e-19 98.2 121 55.4
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 7.4e-16 88.6 127 37.0
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.4e-14 84.3 78 56.4
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 1.2e-13 81.3 97 42.3
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 5.5e-11 72.4 133 42.1
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 1.0e-09 68.2 89 52.8
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 2.3e-09 67.0 152 32.9
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 2.5e-08 63.5 81 45.7
Cfa020859 Carpinus fangiana HOM05D021855 ORTHO05D004837 6.9e-06 55.5 68 50.0


User provided reference genes

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