Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g18560 Fragaria vesca HOM05D006388 ORTHO05D008026 5.4e-259 897.1 450 100.0
FAN18G2055 Fragaria x ananassa HOM05D006388 ORTHO05D008026 4.8e-255 884.0 450 98.9
FAN13G2679 Fragaria x ananassa HOM05D006388 ORTHO05D008026 5.6e-248 860.5 450 96.2
FAN08G3112 Fragaria x ananassa HOM05D006388 ORTHO05D008026 5.3e-246 854.0 450 95.8
RcHm_v2.0_Chr7g0176951 Rosa chinensis HOM05D006388 ORTHO05D008026 8.6e-188 660.6 462 77.5
Prupe.5G245000 Prunus persica HOM05D006388 ORTHO05D008026 5.8e-160 568.2 482 66.0
MD14G1246700 Malus domestica HOM05D006388 ORTHO05D008026 5.6e-155 551.6 489 64.4
Cfa017806 Carpinus fangiana HOM05D006388 ORTHO05D008026 2.1e-146 523.1 466 63.7
Psat1g118840 Pisum sativum HOM05D006388 ORTHO05D008026 1.3e-140 503.8 501 55.9
CiPaw.15G107500 Carya illinoinensis HOM05D006388 ORTHO05D008026 1.5e-139 500.4 470 59.6
Potri.004G067200 Populus trichocarpa HOM05D006388 ORTHO05D008026 1.5e-139 500.4 474 59.3
TPR.G31361 Trifolium pratense HOM05D006388 ORTHO05D008026 1.8e-137 493.4 496 56.9
Dinv03508 Davidia involucrata HOM05D006388 ORTHO05D008026 6.9e-137 491.5 471 60.7
Lj2g0005711 Lotus japonicus HOM05D006388 ORTHO05D008026 1.5e-136 490.3 494 56.5
ClCG10G003610 Citrullus lanatus HOM05D006388 ORTHO05D008026 9.9e-136 487.6 456 59.0
Phvul.004G137100 Phaseolus vulgaris HOM05D006388 ORTHO05D008026 9.9e-136 487.6 462 58.4
VMungo0464G0944 Vigna mungo HOM05D006388 ORTHO05D008026 1.7e-135 486.9 502 55.4
Lalb_Chr03g0034281 Lupinus albus HOM05D006388 ORTHO05D008026 2.2e-135 486.5 501 55.1
TAR622G0711 Trochodendron aralioides HOM05D006388 ORTHO05D008026 2.9e-135 486.1 464 59.3
Haze_18407 Corylus avellana HOM05D006388 ORTHO05D008026 3.8e-135 485.7 463 59.6
Medtr6g068920 Medicago truncatula HOM05D006388 ORTHO05D008026 4.9e-135 485.3 502 55.8
Sabra04G0045000 Salix brachista HOM05D006388 ORTHO05D008026 6.4e-135 485.0 502 54.8
Glyma.16G210900 Glycine max HOM05D006388 ORTHO05D008026 3.2e-134 482.6 499 55.3
MELO3C014032.2 Cucumis melo HOM05D006388 ORTHO05D008026 7.1e-134 481.5 455 57.1
CsaV3_3G003610 Cucumis sativus L. HOM05D006388 ORTHO05D008026 1.0e-132 477.6 456 57.7
arahy.Tifrunner.gnm1.ann1.V0741V Arachis hypogaea HOM05D006388 ORTHO05D008026 7.4e-131 471.5 500 55.6
Atru.chr6.990 Acer truncatum HOM05D006388 ORTHO05D008026 4.8e-130 468.8 459 58.6
arahy.Tifrunner.gnm1.ann1.586MWM Arachis hypogaea HOM05D006388 ORTHO05D008026 8.2e-130 468.0 498 55.6
Sed0000986 Sechium edule HOM05D006388 ORTHO05D008026 4.0e-129 465.7 459 56.4
Lj5A168G91 Lonicera japonica HOM05D006388 ORTHO05D008026 3.4e-128 462.6 496 54.6
CANSAT80G2370 Cannabis sativa HOM05D006388 ORTHO05D008026 4.5e-128 462.2 455 57.8
COL.COLO4_30052 Corchorus olitorius HOM05D006388 ORTHO05D008026 1.0e-127 461.1 457 58.4
Gohir.D08G245800 Gossypium hirsutum HOM05D006388 ORTHO05D008026 4.6e-125 452.2 468 57.1
Ca_25279_v3 Cicer arietinum L. HOM05D006388 ORTHO05D008026 1.9e-123 446.8 478 55.0
Gohir.A08G225400 Gossypium hirsutum HOM05D006388 ORTHO05D008026 2.5e-123 446.4 468 56.2
Thecc.05G197200 Theobroma cacao HOM05D006388 ORTHO05D008026 4.3e-123 445.7 465 58.1
Gorai.004G262300 Gossypium raimondii HOM05D006388 ORTHO05D008026 2.2e-122 443.4 468 56.2
Nitab4.5_0001495g0050 Nicotiana tabacum HOM05D006388 ORTHO05D008026 3.7e-122 442.6 463 55.5
PSO063G3611 Papaver somniferum HOM05D006388 ORTHO05D008026 4.8e-122 442.2 472 52.3
CARHR066430 Cardamine hirsuta HOM05D006388 ORTHO05D008026 1.4e-121 440.7 467 54.0
Eucgr.K02329 Eucalyptus grandis HOM05D006388 ORTHO05D008026 1.8e-121 440.3 468 54.3
ClCG00G000350 Citrullus lanatus HOM05D006388 ORTHO05D008026 4.1e-121 439.1 484 52.5
Cpa.g.sc168.3 Carica papaya HOM05D006388 ORTHO05D008026 5.3e-121 438.7 453 55.0
Carub.0002s2012 Capsella rubella HOM05D006388 ORTHO05D008026 1.2e-120 437.6 453 55.8
Nitab4.5_0007717g0060 Nicotiana tabacum HOM05D006388 ORTHO05D008026 1.5e-120 437.2 462 55.2
TWI15G1133 Tripterygium wilfordii HOM05D006388 ORTHO05D008026 2.0e-120 436.8 464 55.4
Duzib128G0602 Durio zibethinus HOM05D006388 ORTHO05D008026 5.9e-120 435.3 471 55.2
AT1G73380 Arabidopsis thaliana HOM05D006388 ORTHO05D008026 7.7e-120 434.9 459 55.3
Manes.02G226400 Manihot esculenta HOM05D006388 ORTHO05D008026 1.7e-119 433.7 460 54.3
PGR044G0861 Punica granatum HOM05D006388 ORTHO05D008026 5.0e-119 432.2 464 53.2
Thhalv10018586m.g Eutrema salsugineum HOM05D006388 ORTHO05D008026 1.1e-118 431.0 457 54.3
ECA236G2607 Erigeron canadensis HOM05D006388 ORTHO05D008026 1.9e-118 430.3 462 53.9
Lsat_1_v5_gn_8_64640 Lactuca sativa HOM05D006388 ORTHO05D008026 1.9e-118 430.3 457 55.4
AL2G33160 Arabidopsis lyrata HOM05D006388 ORTHO05D008026 2.5e-118 429.9 455 55.2
Cc00_g12620 Coffea canephora HOM05D006388 ORTHO05D008026 1.2e-117 427.6 472 52.3
Aa31LG4G3650 Aethionema arabicum HOM05D006388 ORTHO05D008026 2.1e-117 426.8 455 54.1
MBI03_g13439_MAGBIO Magnolia biondii HOM05D006388 ORTHO05D008026 3.6e-117 426.0 464 53.2
DCAR_014753 Daucus carota HOM05D001996 ORTHO05D002072 7.9e-117 424.9 406 56.9
Nn4g26682 Nelumbo nucifera HOM05D006388 ORTHO05D008026 7.9e-117 424.9 456 53.7
Sp5g28310 Schrenkiella parvula HOM05D006388 ORTHO05D008026 1.4e-116 424.1 455 54.1
BraA02t06912Z Brassica rapa HOM05D006388 ORTHO05D008026 2.5e-115 419.9 456 52.4
SalBow5G5586 Salvia bowleyana HOM05D006388 ORTHO05D008026 2.5e-115 419.9 461 51.8
Sc10g0008630 Simmondsia chinensis HOM05D006388 ORTHO05D008026 2.5e-115 419.9 455 52.7
HanXRQChr05g0141681 Helianthus annuus HOM05D006388 ORTHO05D008026 3.7e-114 416.0 455 53.2
A02p18710 Brassica napus HOM05D006388 ORTHO05D008026 1.1e-113 414.5 455 52.7
C02p31040 Brassica napus HOM05D006388 ORTHO05D008026 1.1e-113 414.5 455 52.7
Sopen03g029690 Solanum pennellii HOM05D006388 ORTHO05D008026 5.3e-113 412.1 467 51.8
Oeu063709.3 Olea europaea HOM05D006388 ORTHO05D008026 9.1e-113 411.4 461 52.7
Aqoxy3G04328 Aquilegia oxysepala HOM05D006388 ORTHO05D008026 4.5e-112 409.1 460 51.7
EL10Ac8g19473 Beta vulgaris HOM05D006388 ORTHO05D008026 4.5e-112 409.1 466 49.8
SGA_v2.0_scaffold25G10731 Striga asiatica HOM05D006388 ORTHO05D008026 5.9e-112 408.7 466 51.1
THA.LOC104813931 Tarenaya hassleriana HOM05D006388 ORTHO05D008026 5.9e-112 408.7 460 52.4
PGSC0003DMG400015280 Solanum tuberosum HOM05D006388 ORTHO05D008026 1.4e-110 404.1 460 51.5
BolC2t09150H Brassica oleracea HOM05D006388 ORTHO05D008026 4.2e-110 402.5 454 51.1
Rhsim08G0125300 Rhododendron simsii HOM05D006388 ORTHO05D008026 2.7e-109 399.8 540 46.5
Ah.14g085810 Amaranthus hybridus HOM05D006388 ORTHO05D008026 7.9e-109 398.3 457 47.5
CDE04G0152 Ceratophyllum demersum HOM05D006388 ORTHO05D008026 3.9e-108 396.0 467 47.1
CAN.G861.30 Capsicum annuum HOM05D006388 ORTHO05D008026 1.5e-107 394.0 471 49.3
TPR.G3132 Trifolium pratense HOM05D006388 ORTHO05D008026 6.3e-106 388.7 427 53.4
ATR0124G024 Amborella trichopoda HOM05D006388 ORTHO05D008026 2.2e-103 380.2 484 45.5
FAN04G1542 Fragaria x ananassa HOM05D006388 ORTHO05D008026 1.1e-102 377.9 205 93.7
AUR62040788 Chenopodium quinoa HOM05D006388 ORTHO05D008026 1.4e-102 377.5 408 50.2
QL10p033727 Quercus lobata HOM05D006388 ORTHO05D008026 7.4e-99 365.2 396 55.1
GSVIVG01024248001 Vitis vinifera HOM05D006388 ORTHO05D008026 2.8e-98 363.2 447 50.6
HPP92_007318 Vanilla planifolia HOM05D006388 ORTHO05D008026 2.0e-96 357.1 452 47.1
Ciclev10020647m.g Citrus clementina HOM05D006388 ORTHO05D008026 2.0e-91 340.5 386 51.8
Solyc03g019930.4 Solanum lycopersicum HOM05D006388 ORTHO05D008026 7.5e-91 338.6 448 46.4
Migut.O00278 Erythranthe guttata HOM05D006388 ORTHO05D008026 3.8e-87 326.2 448 44.9
Hund22363 Selenicereus undatus HOM05D006388 ORTHO05D008026 3.2e-86 323.2 401 47.9
Zm00001eb068340 Zea mays HOM05D006388 ORTHO05D008026 1.6e-80 304.3 452 42.9
vmacro17751 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 2.5e-78 297.0 379 48.8
ClCG00G006010 Citrullus lanatus HOM05D006388 ORTHO05D008026 4.2e-78 296.2 331 52.0
Actinidia34678 Actinidia chinensis HOM05D006388 ORTHO05D008026 7.2e-78 295.4 338 51.2
SEGI_28863 Sequoiadendron giganteum HOM05D006388 ORTHO05D008026 1.8e-73 280.8 461 38.6
unitig_749.g14324 Utricularia gibba HOM05D006388 ORTHO05D008026 9.2e-73 278.5 453 42.4
Glyma.09G161700 Glycine max HOM05D006388 ORTHO05D008026 6.8e-68 262.3 195 69.2
Peaxi162Scf00171g00011 Petunia axillaris HOM05D006388 ORTHO05D008026 4.9e-66 256.1 189 69.3
Os10g0489800 Oryza sativa ssp. japonica HOM05D006388 ORTHO05D008026 2.0e-64 250.8 315 48.6
TPR.G27930 Trifolium pratense HOM05D006388 ORTHO05D008026 7.8e-64 248.8 253 55.7
Duzib128G0966 Durio zibethinus HOM05D006388 ORTHO05D008026 2.5e-62 243.8 173 72.8
AagrBONN_evm.TU.Sc2ySwM_344.3994 Anthoceros agrestis HOM05D006388 ORTHO05D008026 1.1e-57 228.4 543 31.9
Mapoly0114s0003 Marchantia polymorpha HOM05D006388 ORTHO05D008026 3.3e-54 216.9 509 31.8
Gohir.A08G079000 Gossypium hirsutum HOM05D006388 ORTHO05D008026 9.5e-54 215.3 284 48.2
Pp3c1_7520 Physcomitrium patens HOM05D006388 ORTHO05D008026 7.6e-51 205.7 501 31.1
SMO169G0166 Selaginella moellendorffii HOM05D006388 ORTHO05D008026 4.9e-50 203.0 468 32.7
Duzib128G1156 Durio zibethinus HOM05D006388 ORTHO05D008026 1.7e-47 194.5 247 49.4
CSS0002556 Camellia sinensis var. sinensis HOM05D006388 ORTHO05D008026 7.3e-46 189.1 124 77.4
AUR62038569 Chenopodium quinoa HOM05D006388 ORTHO05D008026 8.1e-45 185.7 266 41.0
ClCG00G000360 Citrullus lanatus HOM05D006388 ORTHO05D008026 4.0e-44 183.3 124 75.0
CBR_g36351 Chara braunii HOM05D006388 ORTHO05D008026 1.1e-33 148.7 171 43.9
TPR.G16379 Trifolium pratense HOM05D006388 ORTHO05D008026 8.1e-29 132.5 113 62.8
Glyma.09G161751 Glycine max HOM05D006388 ORTHO05D008026 3.2e-25 120.6 111 54.1
vmacro17752 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 1.2e-24 118.6 70 82.9
TPR.G31360 Trifolium pratense HOM05D006388 ORTHO05D008026 5.1e-23 113.2 70 80.0
TPR.G46 Trifolium pratense HOM05D006388 ORTHO05D008026 1.0e-15 89.0 132 43.9
PGR044G2638 Punica granatum HOM05D006388 ORTHO05D008026 1.5e-14 85.1 96 51.0
Actinidia34679 Actinidia chinensis HOM05D006388 ORTHO05D008026 2.5e-14 84.3 48 85.4
Hma1.2p1_0800F.1_g220210 Hydrangea macrophylla HOM05D006388 ORTHO05D008026 2.0e-11 74.7 54 72.2
MapolyY_B0043 Marchantia polymorpha HOM05D006388 ORTHO05D008026 3.8e-10 70.5 155 33.5
Cre02.g083400 Chlamydomonas reinhardtii HOM05D006388 ORTHO05D008026 2.5e-09 67.8 171 32.2
Zm00001eb050690 Zea mays HOM05D006388 ORTHO05D008026 1.2e-08 65.5 48 62.5
Zm00001eb135490 Zea mays HOM05D006388 ORTHO05D008026 3.5e-08 63.9 205 26.3


User provided reference genes

Program Settings