Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g17480 Fragaria vesca HOM05D007021 ORTHO05D008916 9.6e-113 410.2 215 100.0
FAN18G1853 Fragaria x ananassa HOM05D007021 ORTHO05D008916 9.6e-113 410.2 215 100.0
FAN04G2374 Fragaria x ananassa HOM05D007021 ORTHO05D008916 4.8e-112 407.9 215 99.1
FAN08G1321 Fragaria x ananassa HOM05D007021 ORTHO05D008916 1.5e-110 402.9 215 98.6
RcHm_v2.0_Chr7g0178211 Rosa chinensis HOM05D007021 ORTHO05D008916 1.1e-95 353.6 216 88.9
Prupe.5G234700 Prunus persica HOM05D007021 ORTHO05D008916 5.7e-81 304.7 215 77.7
QL10p030610 Quercus lobata HOM05D007021 ORTHO05D008916 5.7e-73 278.1 216 72.2
MD06G1228200 Malus domestica HOM05D007021 ORTHO05D008916 2.5e-68 262.7 181 79.6
CiPaw.16G096000 Carya illinoinensis HOM05D007021 ORTHO05D008916 7.2e-68 261.2 217 68.2
GSVIVG01008459001 Vitis vinifera HOM05D007021 ORTHO05D008916 1.6e-67 260.0 217 69.1
FAN13G1201 Fragaria x ananassa HOM05D007021 ORTHO05D008916 3.6e-67 258.8 140 99.3
Dinv18013 Davidia involucrata HOM05D007021 ORTHO05D008916 4.9e-64 248.4 208 68.3
Atru.chr9.1670 Acer truncatum HOM05D007021 ORTHO05D008916 4.1e-63 245.4 208 68.8
Hma1.2p1_0163F.1_g073000 Hydrangea macrophylla HOM05D007021 ORTHO05D008916 2.8e-59 232.6 212 64.2
Potri.015G036500 Populus trichocarpa HOM05D007021 ORTHO05D008916 3.6e-59 232.3 217 65.0
Cfa019639 Carpinus fangiana HOM05D007021 ORTHO05D008916 3.0e-58 229.2 183 69.9
CSS0017706 Camellia sinensis var. sinensis HOM05D007021 ORTHO05D008916 5.2e-58 228.4 208 64.4
Sabra15G0029900 Salix brachista HOM05D007021 ORTHO05D008916 1.2e-57 227.3 217 65.0
Cpa.g.sc3.381 Carica papaya HOM05D007021 ORTHO05D008916 5.7e-57 224.9 247 57.1
TWI81G0868 Tripterygium wilfordii HOM05D007021 ORTHO05D008916 1.3e-56 223.8 221 62.0
Gorai.006G191500 Gossypium raimondii HOM05D007021 ORTHO05D008916 8.3e-56 221.1 201 65.2
CANSAT80G0297 Cannabis sativa HOM05D007021 ORTHO05D008916 5.4e-55 218.4 201 65.7
CANSAT80G1746 Cannabis sativa HOM05D007021 ORTHO05D008916 1.6e-54 216.9 201 65.2
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 1.7e-53 213.4 216 59.3
Lalb_Chr05g0221591 Lupinus albus HOM05D007021 ORTHO05D008916 1.7e-53 213.4 202 62.4
Thecc.03G058600 Theobroma cacao HOM05D007021 ORTHO05D008916 1.1e-52 210.7 200 64.0
Sed0001257 Sechium edule HOM05D007021 ORTHO05D008916 1.5e-52 210.3 204 58.8
Ciclev10009503m.g Citrus clementina HOM05D007021 ORTHO05D008916 2.5e-52 209.5 213 59.6
Glyma.05G246900 Glycine max HOM05D007021 ORTHO05D008916 2.5e-52 209.5 209 61.2
Gohir.A09G174900 Gossypium hirsutum HOM05D007021 ORTHO05D008916 2.5e-52 209.5 201 63.2
Glyma.08G055300 Glycine max HOM05D007021 ORTHO05D008916 2.8e-51 206.1 208 59.1
ClCG06G014200 Citrullus lanatus HOM05D007021 ORTHO05D008916 1.4e-50 203.8 213 55.4
HanXRQChr15g0486591 Helianthus annuus HOM05D007021 ORTHO05D008916 2.3e-50 203.0 184 65.2
Aqoxy1G00082 Aquilegia oxysepala HOM05D007021 ORTHO05D008916 3.1e-50 202.6 149 77.2
TAR623G0728 Trochodendron aralioides HOM05D007021 ORTHO05D008916 4.0e-50 202.2 174 66.1
Gohir.D09G170185 Gossypium hirsutum HOM05D007021 ORTHO05D008916 1.5e-49 200.3 167 70.1
Manes.06G004800 Manihot esculenta HOM05D007021 ORTHO05D008916 1.5e-49 200.3 217 57.1
PGR044G2095 Punica granatum HOM05D007021 ORTHO05D008916 1.5e-49 200.3 219 58.4
MELO3C017374.2 Cucumis melo HOM05D007021 ORTHO05D008916 2.6e-49 199.5 208 54.3
CsaV3_1G004470 Cucumis sativus L. HOM05D007021 ORTHO05D008916 2.6e-49 199.5 217 54.4
Migut.I00268 Erythranthe guttata HOM05D007021 ORTHO05D008916 4.4e-49 198.7 222 54.1
COL.COLO4_28897 Corchorus olitorius HOM05D007021 ORTHO05D008916 1.3e-48 197.2 167 70.7
Eucgr.K02276 Eucalyptus grandis HOM05D007021 ORTHO05D008916 1.3e-48 197.2 207 59.9
Nn7g37125 Nelumbo nucifera HOM05D007021 ORTHO05D008916 1.7e-48 196.8 145 73.8
VMungo0251G3404 Vigna mungo HOM05D007021 ORTHO05D008916 1.7e-48 196.8 208 56.2
PSO339G6055 Papaver somniferum HOM05D007021 ORTHO05D008916 3.7e-48 195.7 138 75.4
MSTRG.11303 Avicennia marina HOM05D007021 ORTHO05D008916 6.4e-48 194.9 220 55.0
Lsat_1_v5_gn_8_115881 Lactuca sativa HOM05D007021 ORTHO05D008916 6.4e-48 194.9 186 60.8
Gorai.003G035100 Gossypium raimondii HOM05D007021 ORTHO05D008916 1.9e-47 193.4 167 68.3
Sp3g16050 Schrenkiella parvula HOM05D007021 ORTHO05D008916 3.2e-47 192.6 211 56.9
Solyc05g006440.4 Solanum lycopersicum HOM05D007021 ORTHO05D008916 5.4e-47 191.8 207 60.4
Gohir.D03G033500 Gossypium hirsutum HOM05D007021 ORTHO05D008916 7.0e-47 191.4 167 67.1
Lj9A418T22 Lonicera japonica HOM05D007021 ORTHO05D008916 9.2e-47 191.0 181 63.0
Phvul.002G331000 Phaseolus vulgaris HOM05D007021 ORTHO05D008916 1.6e-46 190.3 208 52.4
Thhalv10021570m.g Eutrema salsugineum HOM05D007021 ORTHO05D008916 2.7e-46 189.5 209 57.9
Gohir.D08G085600 Gossypium hirsutum HOM05D007021 ORTHO05D008916 4.6e-46 188.7 167 66.5
Sopen05g002370 Solanum pennellii HOM05D007021 ORTHO05D008916 1.3e-45 187.2 206 58.7
Rhsim12G0138000 Rhododendron simsii HOM05D007021 ORTHO05D008916 5.0e-45 185.3 195 59.5
PGSC0003DMG400022612 Solanum tuberosum HOM05D007021 ORTHO05D008916 5.0e-45 185.3 219 57.1
HPP92_019433 Vanilla planifolia HOM05D007021 ORTHO05D008916 1.1e-44 184.1 142 69.0
CARHR093260 Cardamine hirsuta HOM05D007021 ORTHO05D008916 1.9e-44 183.3 209 54.5
Sc04g0004860 Simmondsia chinensis HOM05D007021 ORTHO05D008916 1.9e-44 183.3 135 71.9
BcaB06g25855 Brassica carinata HOM05D007021 ORTHO05D008916 2.5e-44 183.0 165 64.2
Psat7g001280 Pisum sativum HOM05D007021 ORTHO05D008916 4.3e-44 182.2 139 73.4
Gorai.004G090100 Gossypium raimondii HOM05D007021 ORTHO05D008916 5.6e-44 181.8 128 77.3
Nitab4.5_0002312g0020 Nicotiana tabacum HOM05D007021 ORTHO05D008916 7.3e-44 181.4 144 72.2
Nitab4.5_0004119g0020 Nicotiana tabacum HOM05D007021 ORTHO05D008916 7.3e-44 181.4 144 72.2
C05p48360 Brassica napus HOM05D007021 ORTHO05D008916 1.2e-43 180.6 128 75.8
Aa31LG8G4800 Aethionema arabicum HOM05D007021 ORTHO05D008916 1.6e-43 180.3 127 75.6
BcaC05g28735 Brassica carinata HOM05D007021 ORTHO05D008916 1.6e-43 180.3 109 82.6
A05p31870 Brassica napus HOM05D007021 ORTHO05D008916 1.6e-43 180.3 109 82.6
BolC5t33573H Brassica oleracea HOM05D007021 ORTHO05D008916 1.6e-43 180.3 109 82.6
BraA05t22019Z Brassica rapa HOM05D007021 ORTHO05D008916 1.6e-43 180.3 109 82.6
CAN.G159.4 Capsicum annuum HOM05D007021 ORTHO05D008916 1.6e-43 180.3 238 53.4
THA.LOC104821829 Tarenaya hassleriana HOM05D007021 ORTHO05D008916 1.6e-43 180.3 123 74.8
TPR.G1394 Trifolium pratense HOM05D007021 ORTHO05D008916 2.1e-43 179.9 221 51.6
arahy.Tifrunner.gnm1.ann1.2FQ1SS Arachis hypogaea HOM05D007021 ORTHO05D008916 3.6e-43 179.1 115 80.0
ECA232G1431 Erigeron canadensis HOM05D000006 ORTHO05D000091 3.6e-43 179.1 116 80.2
Lj4g0002555 Lotus japonicus HOM05D007021 ORTHO05D008916 3.6e-43 179.1 117 78.6
Cc04_g06110 Coffea canephora HOM05D007021 ORTHO05D008916 8.1e-43 177.9 105 86.7
arahy.Tifrunner.gnm1.ann1.I2I16V Arachis hypogaea HOM05D007021 ORTHO05D008916 1.1e-42 177.6 134 72.4
PSO384G2008 Papaver somniferum HOM05D007021 ORTHO05D008916 1.1e-42 177.6 130 74.6
unitig_899.g15339 Utricularia gibba HOM05D007021 ORTHO05D008916 1.8e-42 176.8 132 70.5
AL3G31100 Arabidopsis lyrata HOM05D007021 ORTHO05D008916 4.0e-42 175.6 105 83.8
AT3G17930 Arabidopsis thaliana HOM05D007021 ORTHO05D008916 4.0e-42 175.6 105 83.8
Carub.0003s1766 Capsella rubella HOM05D007021 ORTHO05D008916 6.8e-42 174.9 105 82.9
MBI13_g41749_MAGBIO Magnolia biondii HOM05D007021 ORTHO05D008916 6.8e-42 174.9 105 81.9
Medtr8g107430 Medicago truncatula HOM05D007021 ORTHO05D008916 1.5e-41 173.7 104 85.6
Oeu046158.1 Olea europaea HOM05D007021 ORTHO05D008916 1.5e-41 173.7 105 82.9
Hund08707 Selenicereus undatus HOM05D007021 ORTHO05D008916 1.5e-41 173.7 171 58.5
ATR1096G089 Amborella trichopoda HOM05D007021 ORTHO05D008916 2.0e-41 173.3 137 67.9
Gohir.1Z049463 Gossypium hirsutum HOM05D007021 ORTHO05D008916 2.0e-41 173.3 201 56.7
Haze_18883 Corylus avellana HOM05D007021 ORTHO05D008916 1.7e-40 170.2 138 67.4
CDE04G1339 Ceratophyllum demersum HOM05D000015 ORTHO05D002445 3.7e-40 169.1 164 59.8
Os01g0805200 Oryza sativa ssp. japonica HOM05D007021 ORTHO05D008916 3.7e-40 169.1 110 76.4
Zm00001eb150510 Zea mays HOM05D007021 ORTHO05D008916 4.9e-40 168.7 128 69.5
EL10Ac8g19152 Beta vulgaris HOM05D007021 ORTHO05D008916 1.1e-39 167.5 164 59.1
SEGI_41594 Sequoiadendron giganteum HOM05D007021 ORTHO05D008916 5.4e-39 165.2 146 62.3
Duzib068G0088 Durio zibethinus HOM05D007021 ORTHO05D008916 3.5e-38 162.5 206 52.4
Pp3c5_23310 Physcomitrium patens HOM05D007021 ORTHO05D008916 3.5e-38 162.5 134 65.7
Mapoly0023s0040 Marchantia polymorpha HOM05D007021 ORTHO05D008916 1.1e-34 151.0 204 46.1
AagrBONN_evm.TU.Sc2ySwM_117.710 Anthoceros agrestis HOM05D007021 ORTHO05D008916 1.4e-34 150.6 131 58.8
AagrBONN_evm.TU.Sc2ySwM_340.579 Anthoceros agrestis HOM05D007021 ORTHO05D008916 1.4e-34 150.6 131 58.8
SMO353G0175 Selaginella moellendorffii HOM05D007021 ORTHO05D008916 6.8e-34 148.3 119 63.9
CDE07G1635 Ceratophyllum demersum HOM05D007021 ORTHO05D008916 2.9e-32 142.9 101 69.3
DCAR_014390 Daucus carota HOM05D007021 ORTHO05D008916 1.9e-31 140.2 86 86.0
CBR_g48186 Chara braunii HOM05D007021 ORTHO05D008916 2.1e-30 136.7 105 61.9
Peaxi162Scf00828g00016 Petunia axillaris HOM05D007021 ORTHO05D008916 4.6e-30 135.6 86 84.9
Cre01.g000850 Chlamydomonas reinhardtii HOM05D007021 ORTHO05D008916 5.6e-28 128.6 115 56.5
AUR62025165 Chenopodium quinoa HOM05D007021 ORTHO05D008916 7.3e-28 128.3 76 82.9
AUR62029014 Chenopodium quinoa HOM05D007021 ORTHO05D008916 7.3e-28 128.3 76 82.9
MD14G1237400 Malus domestica HOM05D007021 ORTHO05D008916 2.0e-25 120.2 184 42.9
Oeu010907.1 Olea europaea HOM05D007021 ORTHO05D008916 7.3e-20 101.7 112 55.4
MCO16G182 Micromonas commoda HOM05D007021 ORTHO05D008916 5.3e-18 95.5 116 44.8
PRCOL_00000692 Prasinoderma coloniale HOM05D007021 ORTHO05D008916 9.9e-17 91.3 102 48.0


User provided reference genes

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