Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g17100 Fragaria vesca HOM05D005102 ORTHO05D006090 4.4e-153 544.7 290 100.0
FAN18G4219 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.3e-152 543.1 290 99.7
FAN08G3625 Fragaria x ananassa HOM05D005102 ORTHO05D006090 2.7e-150 535.4 290 98.3
FAN04G2658 Fragaria x ananassa HOM05D005102 ORTHO05D006090 7.8e-150 533.9 290 97.9
FAN13G1436 Fragaria x ananassa HOM05D005102 ORTHO05D006090 7.3e-148 527.3 290 96.9
RcHm_v2.0_Chr7g0178711 Rosa chinensis HOM05D005102 ORTHO05D006090 1.4e-130 469.9 299 84.9
Prupe.5G230500 Prunus persica HOM05D005102 ORTHO05D006090 1.3e-125 453.4 297 83.5
MD06G1229400 Malus domestica HOM05D005102 ORTHO05D006090 3.7e-115 418.7 295 77.6
Manes.03G102500 Manihot esculenta HOM05D005102 ORTHO05D006090 1.3e-109 400.2 297 75.4
Duzib052G0859 Durio zibethinus HOM05D005102 ORTHO05D006090 3.9e-109 398.7 294 74.8
Thecc.04G266700 Theobroma cacao HOM05D005102 ORTHO05D006090 1.1e-108 397.1 294 75.2
CiPaw.01G176900 Carya illinoinensis HOM05D005102 ORTHO05D006090 1.9e-108 396.4 294 74.8
COL.COLO4_15983 Corchorus olitorius HOM05D005102 ORTHO05D006090 2.5e-108 396.0 294 73.5
QL08p018871 Quercus lobata HOM05D005102 ORTHO05D006090 3.3e-108 395.6 293 75.1
Cfa014795 Carpinus fangiana HOM05D005102 ORTHO05D006090 4.3e-108 395.2 291 74.9
QL06p021548 Quercus lobata HOM05D005102 ORTHO05D006090 5.7e-108 394.8 291 75.6
Haze_11479 Corylus avellana HOM05D005102 ORTHO05D006090 8.2e-107 391.0 291 73.9
Ciclev10005541m.g Citrus clementina HOM05D005102 ORTHO05D006090 1.2e-105 387.1 295 73.6
CANSAT78G2207 Cannabis sativa HOM05D005102 ORTHO05D006090 2.9e-104 382.5 298 72.5
Gorai.005G054400 Gossypium raimondii HOM05D005102 ORTHO05D006090 8.5e-104 380.9 294 71.4
Gohir.A02G043600 Gossypium hirsutum HOM05D005102 ORTHO05D006090 9.3e-103 377.5 294 70.7
TWI09G0526 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 4.6e-102 375.2 293 71.3
Actinidia37761 Actinidia chinensis HOM05D005102 ORTHO05D006090 5.1e-101 371.7 297 69.0
Dinv27121 Davidia involucrata HOM05D005102 ORTHO05D006090 1.9e-100 369.8 287 71.4
Atru.chr12.1207 Acer truncatum HOM05D005102 ORTHO05D006090 2.2e-99 366.3 300 70.0
THA.LOC104808740 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 2.2e-99 366.3 297 69.4
Glyma.15G125200 Glycine max HOM05D005102 ORTHO05D006090 4.8e-99 365.2 293 70.0
Nn3g19843 Nelumbo nucifera HOM05D005102 ORTHO05D006090 8.2e-99 364.4 294 70.1
Lj3g0001784 Lotus japonicus HOM05D005102 ORTHO05D006090 3.1e-98 362.5 293 70.0
Glyma.09G019100 Glycine max HOM05D005102 ORTHO05D006090 4.1e-98 362.1 294 70.7
Psat7g046400 Pisum sativum HOM05D005102 ORTHO05D006090 4.1e-98 362.1 294 69.4
Lj6g0009036 Lotus japonicus HOM05D005102 ORTHO05D006090 5.3e-98 361.7 293 69.6
Potri.010G064900 Populus trichocarpa HOM05D005102 ORTHO05D006090 1.2e-97 360.5 301 67.8
Phvul.006G133300 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 1.5e-97 360.1 293 69.6
Ca_11361_v3 Cicer arietinum L. HOM05D005102 ORTHO05D006090 5.9e-97 358.2 294 68.4
Psat1g170520 Pisum sativum HOM05D005102 ORTHO05D006090 6.5e-96 354.8 295 68.8
CSS0019941 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 1.4e-95 353.6 298 67.4
Aqoxy5G00133 Aquilegia oxysepala HOM05D005102 ORTHO05D006090 1.9e-95 353.2 280 70.0
CSS0043447 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 4.2e-95 352.1 298 67.4
Eucgr.K00416 Eucalyptus grandis HOM05D005102 ORTHO05D006090 5.5e-95 351.7 253 76.7
TPR.G17506 Trifolium pratense HOM05D005102 ORTHO05D006090 9.4e-95 350.9 295 68.1
Nitab4.5_0001041g0140 Nicotiana tabacum HOM05D005102 ORTHO05D006090 3.6e-94 349.0 294 67.3
TAR365G0288 Trochodendron aralioides HOM05D005102 ORTHO05D006090 4.6e-94 348.6 295 66.1
GSVIVG01027934001 Vitis vinifera HOM05D005102 ORTHO05D006090 1.4e-93 347.1 291 66.0
THA.LOC104810405 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 2.6e-92 342.8 268 72.0
VMungo0540G0767 Vigna mungo HOM05D005102 ORTHO05D006090 3.3e-92 342.4 268 70.1
Migut.G00562 Erythranthe guttata HOM05D005102 ORTHO05D006090 4.4e-92 342.0 296 65.2
Medtr2g028660 Medicago truncatula HOM05D005102 ORTHO05D006090 5.7e-92 341.7 311 64.0
DCAR_030764 Daucus carota HOM05D005102 ORTHO05D006090 9.7e-92 340.9 296 66.2
EL10Ac3g06678 Beta vulgaris HOM05D005102 ORTHO05D006090 1.3e-91 340.5 295 66.1
arahy.Tifrunner.gnm1.ann1.Z186RR Arachis hypogaea HOM05D005102 ORTHO05D006090 1.7e-91 340.1 325 62.2
Cc03_g06480 Coffea canephora HOM05D005102 ORTHO05D006090 2.8e-91 339.3 304 65.1
Ah.10g026170 Amaranthus hybridus HOM05D005102 ORTHO05D006090 8.2e-91 337.8 295 65.1
AL3G39760 Arabidopsis lyrata HOM05D005102 ORTHO05D006090 5.3e-90 335.1 295 65.1
Sabra10G0042100 Salix brachista HOM05D005102 ORTHO05D006090 5.3e-90 335.1 307 63.8
Aa31LG8G11040 Aethionema arabicum HOM05D005102 ORTHO05D006090 9.1e-90 334.3 296 62.8
HanXRQChr01g0011201 Helianthus annuus HOM05D005102 ORTHO05D006090 2.6e-89 332.8 291 65.6
BcaB06g26613 Brassica carinata HOM05D005102 ORTHO05D006090 3.4e-89 332.4 294 64.3
BcaC06g35682 Brassica carinata HOM05D005102 ORTHO05D006090 5.9e-89 331.6 294 63.9
C07p12060 Brassica napus HOM05D005102 ORTHO05D006090 5.9e-89 331.6 294 63.9
BraA07t28587Z Brassica rapa HOM05D005102 ORTHO05D006090 5.9e-89 331.6 294 63.9
A07p08000 Brassica napus HOM05D005102 ORTHO05D006090 1.7e-88 330.1 294 63.9
BolC7t41674H Brassica oleracea HOM05D005102 ORTHO05D006090 1.7e-88 330.1 294 63.6
Thhalv10002630m.g Eutrema salsugineum HOM05D005102 ORTHO05D006090 2.9e-88 329.3 293 63.5
Sc13g0003090 Simmondsia chinensis HOM05D005102 ORTHO05D006090 1.1e-87 327.4 292 63.7
AT3G24315 Arabidopsis thaliana HOM05D005102 ORTHO05D006090 1.4e-87 327.0 298 63.4
Carub.0003s2465 Capsella rubella HOM05D005102 ORTHO05D006090 1.4e-87 327.0 295 63.7
Nitab4.5_0005154g0050 Nicotiana tabacum HOM05D005102 ORTHO05D006090 2.5e-87 326.2 329 59.3
Sp3g22120 Schrenkiella parvula HOM05D005102 ORTHO05D006090 5.5e-87 325.1 296 61.8
PSO170G5569 Papaver somniferum HOM05D005102 ORTHO05D006090 2.7e-86 322.8 293 63.1
Sopen09g033820 Solanum pennellii HOM05D005102 ORTHO05D006090 3.6e-86 322.4 297 64.3
CARHR100410 Cardamine hirsuta HOM05D005102 ORTHO05D006090 7.9e-86 321.2 304 60.9
Rhsim01G0226300 Rhododendron simsii HOM05D005102 ORTHO05D006090 7.9e-86 321.2 320 59.7
C03p53630 Brassica napus HOM05D005102 ORTHO05D006090 2.3e-85 319.7 291 62.5
MSTRG.9850 Avicennia marina HOM05D005102 ORTHO05D006090 3.0e-85 319.3 302 61.3
PSO302G0040 Papaver somniferum HOM05D005102 ORTHO05D006090 3.0e-85 319.3 293 62.5
BcaC01g03326 Brassica carinata HOM05D005102 ORTHO05D006090 3.9e-85 318.9 291 62.5
AUR62018036 Chenopodium quinoa HOM05D005102 ORTHO05D006090 5.2e-85 318.5 293 62.8
Solyc09g090860.4 Solanum lycopersicum HOM05D005102 ORTHO05D006090 8.8e-85 317.8 296 63.9
CAN.G812.17 Capsicum annuum HOM05D005102 ORTHO05D006090 2.0e-84 316.6 294 63.6
Lj6A637G59 Lonicera japonica HOM05D005102 ORTHO05D006090 4.4e-84 315.5 359 54.3
Lsat_1_v5_gn_1_75501 Lactuca sativa HOM05D005102 ORTHO05D006090 5.7e-84 315.1 273 65.6
PSO832G1873 Papaver somniferum HOM05D005102 ORTHO05D006090 5.7e-84 315.1 294 63.9
ATR0787G185 Amborella trichopoda HOM05D005102 ORTHO05D006090 2.8e-83 312.8 263 64.6
BolC3t17623H Brassica oleracea HOM05D005102 ORTHO05D006090 2.4e-82 309.7 299 60.5
Oeu047122.2 Olea europaea HOM05D005102 ORTHO05D006090 3.1e-82 309.3 386 50.8
Sed0020820 Sechium edule HOM05D005102 ORTHO05D006090 1.6e-81 307.0 292 59.2
Gohir.D02G049200 Gossypium hirsutum HOM05D005102 ORTHO05D006090 2.6e-81 306.2 228 73.7
Lalb_Chr06g0169571 Lupinus albus HOM05D005102 ORTHO05D006090 3.5e-81 305.8 295 61.0
ClCG06G002570 Citrullus lanatus HOM05D005102 ORTHO05D006090 1.0e-80 304.3 286 59.4
HPP92_021768 Vanilla planifolia HOM05D005102 ORTHO05D006090 1.3e-80 303.9 298 61.1
PSO764G0108 Papaver somniferum HOM05D005102 ORTHO05D006090 2.2e-80 303.1 295 61.7
Zm00001eb238020 Zea mays HOM05D005102 ORTHO05D006090 1.1e-79 300.8 279 62.7
A03p43600 Brassica napus HOM05D005102 ORTHO05D006090 1.5e-79 300.4 289 61.2
CDE09G0962 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 1.9e-79 300.1 254 64.2
Os02g0658900 Oryza sativa ssp. japonica HOM05D005102 ORTHO05D006090 7.2e-79 298.1 256 65.6
AUR62015240 Chenopodium quinoa HOM05D005102 ORTHO05D006090 1.0e-77 294.3 292 59.2
PGSC0003DMG400001501 Solanum tuberosum HOM05D005102 ORTHO05D006090 2.3e-77 293.1 388 50.3
Hund22254 Selenicereus undatus HOM05D005102 ORTHO05D006090 3.3e-76 289.3 372 51.3
CDE02G3615 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 7.5e-76 288.1 250 63.2
SGA_v2.0_scaffold127G34013 Striga asiatica HOM05D005102 ORTHO05D006090 4.1e-74 282.3 300 58.3
SGA_v2.0_scaffold454G51888 Striga asiatica HOM05D005102 ORTHO05D006090 2.5e-71 273.1 298 57.0
MELO3C022272.2 Cucumis melo HOM05D005102 ORTHO05D006090 4.2e-71 272.3 297 55.9
CsaV3_6G008560 Cucumis sativus L. HOM05D005102 ORTHO05D006090 6.1e-70 268.5 237 63.7
SGA_v2.0_scaffold193G40717 Striga asiatica HOM05D005102 ORTHO05D006090 6.1e-70 268.5 219 67.6
vmacro04848 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 6.3e-67 258.5 198 74.2
TWI63G1490 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 3.8e-64 249.2 212 67.9
BraA03t13497Z Brassica rapa HOM05D005102 ORTHO05D006090 5.0e-64 248.8 288 54.5
Cpa.g.sc59.14 Carica papaya HOM05D005102 ORTHO05D006090 6.5e-64 248.4 183 76.0
SEGI_01035 Sequoiadendron giganteum HOM05D005102 ORTHO05D006090 6.5e-64 248.4 248 56.5
vmacro20979 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 6.6e-56 221.9 305 51.8
Peaxi162Scf00531g00334 Petunia axillaris HOM05D005102 ORTHO05D006090 7.3e-55 218.4 174 69.0
SalBow2G1408 Salvia bowleyana HOM05D005102 ORTHO05D006090 2.4e-50 203.4 183 63.4
Mapoly0019s0137 Marchantia polymorpha HOM05D005102 ORTHO05D006090 4.6e-49 199.1 233 48.5
ECA247G3419 Erigeron canadensis HOM05D005102 ORTHO05D006090 1.3e-48 197.6 183 65.6
AagrBONN_evm.TU.Sc2ySwM_228.1541 Anthoceros agrestis HOM05D005102 ORTHO05D006090 2.3e-48 196.8 231 46.8
AagrBONN_evm.TU.Sc2ySwM_368.1701 Anthoceros agrestis HOM05D005102 ORTHO05D006090 3.0e-48 196.4 236 45.8
SHI00826 Sapria himalayana HOM05D005102 ORTHO05D006090 5.0e-48 195.7 277 47.3
Nitab4.5_0002613g0070 Nicotiana tabacum HOM05D005102 ORTHO05D006090 1.6e-41 174.1 140 71.4
SMO364G0891 Selaginella moellendorffii HOM05D005102 ORTHO05D006090 6.0e-41 172.2 218 44.0
Pp3c27_3370 Physcomitrium patens HOM05D005102 ORTHO05D006090 1.0e-40 171.4 235 42.1
Zm00001eb048840 Zea mays HOM05D005102 ORTHO05D006090 1.5e-36 157.5 162 57.4
Phvul.006G132800 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 2.9e-35 153.3 179 54.7
Eucgr.G00566 Eucalyptus grandis HOM05D005102 ORTHO05D006090 1.4e-34 151.0 120 70.8
arahy.Tifrunner.gnm1.ann1.4HQ694 Arachis hypogaea HOM05D005102 ORTHO05D006090 1.3e-32 144.4 119 68.1
CBR_g37523 Chara braunii HOM05D005102 ORTHO05D006090 1.7e-32 144.1 230 40.9
Peaxi162Scf00531g00327 Petunia axillaris HOM05D000868 ORTHO05D000711 3.9e-32 142.9 123 65.0
Pp3c16_3280 Physcomitrium patens HOM05D005102 ORTHO05D006090 3.6e-30 136.3 223 39.0
Dinv30772 Davidia involucrata HOM05D005102 ORTHO05D006090 7.6e-28 128.6 80 90.0
unitig_748.g8293 Utricularia gibba HOM05D005102 ORTHO05D006090 1.2e-25 121.3 130 53.1
Zm00001eb188010 Zea mays HOM05D005102 ORTHO05D006090 5.1e-24 115.9 118 55.9
Zm00001eb144710 Zea mays HOM05D005102 ORTHO05D006090 6.6e-24 115.5 174 44.8
CiPaw.02G105900 Carya illinoinensis HOM05D005102 ORTHO05D006090 8.9e-21 105.1 98 60.2
Zm00001eb021120 Zea mays HOM05D005102 ORTHO05D006090 1.9e-18 97.4 105 54.3
Zm00001eb156410 Zea mays HOM05D005102 ORTHO05D006090 5.4e-18 95.9 105 53.3
Zm00001eb291560 Zea mays HOM05D005102 ORTHO05D006090 2.7e-17 93.6 105 53.3
Zm00001eb324110 Zea mays HOM05D005102 ORTHO05D006090 1.2e-12 78.2 67 61.2
Zm00001eb049220 Zea mays HOM05D005102 ORTHO05D006090 1.3e-08 64.7 51 64.7
Zm00001eb318660 Zea mays HOM05D005102 ORTHO05D006090 1.3e-08 64.7 51 64.7
Zm00001eb402860 Zea mays HOM05D005102 ORTHO05D006090 1.3e-08 64.7 51 64.7
Zm00001eb423240 Zea mays HOM05D005102 ORTHO05D006090 1.3e-08 64.7 51 64.7
FAN12G0942 Fragaria x ananassa HOM05D018336 ORTHO05D006090 6.7e-08 62.4 31 90.3
Cre02.g090650 Chlamydomonas reinhardtii HOM05D005102 ORTHO05D006090 1.6e-06 57.8 231 22.1
PRCOL_00001816 Prasinoderma coloniale HOM05D005102 ORTHO05D006090 3.7e-06 56.6 161 32.3


User provided reference genes

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