Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g16500 Fragaria vesca HOM05D005070 ORTHO05D005987 1.1e-44 183.0 96 100.0
FAN04G3047 Fragaria x ananassa HOM05D005070 ORTHO05D005987 1.1e-44 183.0 96 100.0
FAN13G2199 Fragaria x ananassa HOM05D005070 ORTHO05D005987 1.1e-44 183.0 96 100.0
FAN18G1077 Fragaria x ananassa HOM05D005070 ORTHO05D005987 2.5e-44 181.8 96 99.0
FAN08G0574 Fragaria x ananassa HOM05D005070 ORTHO05D005987 1.8e-42 175.6 96 96.9
RcHm_v2.0_Chr7g0179591 Rosa chinensis HOM05D005070 ORTHO05D005987 2.2e-40 168.7 96 91.7
MD14G1185300 Malus domestica HOM05D005070 ORTHO05D005987 1.1e-31 139.8 98 75.5
Prupe.5G178000 Prunus persica HOM05D005070 ORTHO05D005987 2.7e-30 135.2 98 72.4
MD06G1180200 Malus domestica HOM05D005070 ORTHO05D005987 1.3e-29 132.9 97 71.1
Hma1.2p1_1643F.1_g295270 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.3e-29 132.1 96 72.9
Hma1.2p1_2351F.1_g320498 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.3e-29 132.1 96 72.9
CsaV3_1G001750 Cucumis sativus L. HOM05D005070 ORTHO05D005987 1.6e-27 125.9 92 69.6
QL10p013399 Quercus lobata HOM05D005070 ORTHO05D005987 1.6e-27 125.9 98 68.4
Cfa019078 Carpinus fangiana HOM05D005070 ORTHO05D005987 1.4e-26 122.9 98 65.3
Dinv09171 Davidia involucrata HOM05D005070 ORTHO05D005987 4.0e-26 121.3 103 62.1
Dinv20690 Davidia involucrata HOM05D005070 ORTHO05D005987 4.0e-26 121.3 96 66.7
CiPaw.12G023900 Carya illinoinensis HOM05D005070 ORTHO05D005987 5.2e-26 120.9 98 66.3
Manes.06G101800 Manihot esculenta HOM05D005070 ORTHO05D005987 6.8e-26 120.6 94 66.0
Sed0013294 Sechium edule HOM05D005070 ORTHO05D005987 6.8e-26 120.6 95 68.4
GSVIVG01007813001 Vitis vinifera HOM05D005070 ORTHO05D005987 6.8e-26 120.6 98 66.3
TWI32G1183 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 8.9e-26 120.2 97 64.9
Hma1.2p1_0002F.1_g002700 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 1.2e-25 119.8 96 66.7
Thecc.03G005900 Theobroma cacao HOM05D005070 ORTHO05D005987 1.2e-25 119.8 95 67.4
Actinidia19084 Actinidia chinensis HOM05D005070 ORTHO05D005987 1.5e-25 119.4 96 65.6
Potri.015G072100 Populus trichocarpa HOM05D005070 ORTHO05D005987 2.0e-25 119.0 99 64.6
COL.COLO4_04329 Corchorus olitorius HOM05D005070 ORTHO05D005987 3.4e-25 118.2 95 65.3
Thhalv10005150m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 3.4e-25 118.2 98 62.2
Sed0009180 Sechium edule HOM05D005070 ORTHO05D005987 3.4e-25 118.2 96 65.6
CSS0001011 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 4.4e-25 117.9 93 66.7
CANSAT80G1974 Cannabis sativa HOM05D005070 ORTHO05D005987 4.4e-25 117.9 100 63.0
THA.LOC104821444 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 7.5e-25 117.1 92 64.1
TWI34G0241 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 7.5e-25 117.1 99 63.6
Ciclev10024649m.g Citrus clementina HOM05D005070 ORTHO05D005987 9.8e-25 116.7 95 64.2
Solyc06g073360.3 Solanum lycopersicum HOM05D005070 ORTHO05D005987 9.8e-25 116.7 96 62.5
Sopen06g029740 Solanum pennellii HOM05D005070 ORTHO05D005987 9.8e-25 116.7 96 62.5
MSTRG.9667 Avicennia marina HOM05D005070 ORTHO05D005987 1.7e-24 115.9 96 64.6
Potri.012G077101 Populus trichocarpa HOM05D005070 ORTHO05D005987 1.7e-24 115.9 97 63.9
MSTRG.4382 Avicennia marina HOM05D005070 ORTHO05D005987 2.9e-24 115.2 95 63.2
Migut.D01788 Erythranthe guttata HOM05D005070 ORTHO05D005987 2.9e-24 115.2 94 67.0
CANSAT35G0192 Cannabis sativa HOM05D005070 ORTHO05D005987 4.9e-24 114.4 100 61.0
Cc04_g13080 Coffea canephora HOM05D005070 ORTHO05D005987 4.9e-24 114.4 95 62.1
Nn3g16981 Nelumbo nucifera HOM05D005070 ORTHO05D005987 4.9e-24 114.4 97 59.8
MELO3C017115.2 Cucumis melo HOM05D005070 ORTHO05D005987 6.4e-24 114.0 93 67.7
Actinidia33046 Actinidia chinensis HOM05D005070 ORTHO05D005987 8.3e-24 113.6 96 64.6
CSS0038581 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 8.3e-24 113.6 98 61.2
Psat5g113840 Pisum sativum HOM05D005070 ORTHO05D005987 8.3e-24 113.6 95 63.2
Atru.chr9.2417 Acer truncatum HOM05D005070 ORTHO05D005987 1.1e-23 113.2 97 63.9
AT5G62575 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 1.4e-23 112.8 99 59.6
Gohir.D12G277200 Gossypium hirsutum HOM05D005070 ORTHO05D005987 1.4e-23 112.8 97 64.9
Manes.06G101600 Manihot esculenta HOM05D005070 ORTHO05D005987 1.4e-23 112.8 94 61.7
Oeu022174.1 Olea europaea HOM05D005070 ORTHO05D005987 1.4e-23 112.8 95 62.1
Eucgr.B00344 Eucalyptus grandis HOM05D005070 ORTHO05D005987 3.2e-23 111.7 100 65.0
Nitab4.5_0003132g0040 Nicotiana tabacum HOM05D005070 ORTHO05D005987 3.2e-23 111.7 96 60.4
TAR371G1219 Trochodendron aralioides HOM05D005070 ORTHO05D005987 3.2e-23 111.7 97 60.8
AL5G27130 Arabidopsis lyrata HOM05D005070 ORTHO05D005987 4.1e-23 111.3 98 60.2
Gohir.A12G276360 Gossypium hirsutum HOM05D005070 ORTHO05D005987 4.1e-23 111.3 97 63.9
THA.LOC104819433 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 4.1e-23 111.3 89 64.0
Thhalv10010853m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 5.4e-23 110.9 93 62.4
Gorai.008G297700 Gossypium raimondii HOM05D005070 ORTHO05D005987 5.4e-23 110.9 98 64.3
Oeu016348.1 Olea europaea HOM05D005070 ORTHO05D005987 5.4e-23 110.9 94 63.8
Duzib068G0746 Durio zibethinus HOM05D005070 ORTHO05D005987 7.1e-23 110.5 95 63.2
CARHR276360 Cardamine hirsuta HOM05D005070 ORTHO05D005987 9.2e-23 110.2 99 59.6
Ca_16205_v3 Cicer arietinum L. HOM05D000612 ORTHO05D005987 1.2e-22 109.8 98 60.2
Nitab4.5_0005570g0060 Nicotiana tabacum HOM05D005070 ORTHO05D005987 1.2e-22 109.8 92 60.9
arahy.Tifrunner.gnm1.ann1.FI7QKA Arachis hypogaea HOM05D005070 ORTHO05D005987 1.6e-22 109.4 95 60.0
Lalb_Chr23g0273091 Lupinus albus HOM05D005070 ORTHO05D005987 1.6e-22 109.4 95 63.2
Peaxi162Scf00375g00418 Petunia axillaris HOM05D005070 ORTHO05D005987 1.6e-22 109.4 96 58.3
Sc04g0002050 Simmondsia chinensis HOM05D005070 ORTHO05D005987 1.6e-22 109.4 96 63.5
arahy.Tifrunner.gnm1.ann1.LKK6LB Arachis hypogaea HOM05D005070 ORTHO05D005987 2.1e-22 109.0 97 58.8
Sabra12G0055200 Salix brachista HOM05D005070 ORTHO05D005987 2.1e-22 109.0 99 61.6
Duzib205G1171 Durio zibethinus HOM05D005070 ORTHO05D005987 2.7e-22 108.6 96 63.5
Carub.0008s2325 Capsella rubella HOM05D005070 ORTHO05D005987 3.5e-22 108.2 99 58.6
CARHR156530 Cardamine hirsuta HOM05D005070 ORTHO05D005987 3.5e-22 108.2 96 61.5
Phvul.009G181300 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 3.5e-22 108.2 94 61.7
AT3G47833 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 4.6e-22 107.8 93 62.4
Carub.0005s1395 Capsella rubella HOM05D005070 ORTHO05D005987 4.6e-22 107.8 94 61.7
Medtr3g078310 Medicago truncatula HOM05D005070 ORTHO05D005987 4.6e-22 107.8 95 60.0
Nn4g22889 Nelumbo nucifera HOM05D005070 ORTHO05D005987 4.6e-22 107.8 97 56.7
Sp2g25760 Schrenkiella parvula HOM05D005070 ORTHO05D005987 4.6e-22 107.8 99 56.6
TPR.G15088 Trifolium pratense HOM05D005070 ORTHO05D005987 4.6e-22 107.8 97 58.8
TAR629G1223 Trochodendron aralioides HOM05D005070 ORTHO05D005987 7.8e-22 107.1 96 59.4
Aqoxy3G03084 Aquilegia oxysepala HOM05D005070 ORTHO05D005987 1.3e-21 106.3 95 60.0
unitig_0.g791 Utricularia gibba HOM05D005070 ORTHO05D005987 2.3e-21 105.5 92 60.9
Lj1g0020478 Lotus japonicus HOM05D005070 ORTHO05D005987 3.0e-21 105.1 93 58.1
TPR.G17706 Trifolium pratense HOM05D005070 ORTHO05D005987 3.0e-21 105.1 95 58.9
PGR083G2074 Punica granatum HOM05D005070 ORTHO05D005987 5.1e-21 104.4 94 59.6
SGA_v2.0_scaffold7G04113 Striga asiatica HOM05D007129 ORTHO05D008680 5.1e-21 104.4 96 60.4
BcaB01g00872 Brassica carinata HOM05D005070 ORTHO05D005987 5.6e-20 100.9 93 58.1
Hma1.2p1_1643F.1_g295260 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 5.6e-20 100.9 77 70.1
Hma1.2p1_2351F.1_g320497 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 5.6e-20 100.9 77 70.1
Phvul.009G149950 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 7.3e-20 100.5 92 58.7
Aa31LG4G16490 Aethionema arabicum HOM05D007129 ORTHO05D008680 9.5e-20 100.1 91 56.0
Glyma.04G179700 Glycine max HOM05D005070 ORTHO05D005987 9.5e-20 100.1 90 55.6
Glyma.06G185100 Glycine max HOM05D005070 ORTHO05D005987 9.5e-20 100.1 93 59.1
HanXRQChr16g0503551 Helianthus annuus HOM05D005070 ORTHO05D005987 9.5e-20 100.1 95 55.8
Lalb_Chr11g0071141 Lupinus albus HOM05D005070 ORTHO05D005987 9.5e-20 100.1 95 56.8
TAR622G0050 Trochodendron aralioides HOM05D005070 ORTHO05D005987 1.6e-19 99.4 88 60.2
A06p19790 Brassica napus HOM05D005070 ORTHO05D005987 2.1e-19 99.0 93 57.0
BraA06t25059Z Brassica rapa HOM05D005070 ORTHO05D005987 2.1e-19 99.0 93 57.0
Hund09411 Selenicereus undatus HOM05D005070 ORTHO05D005987 2.8e-19 98.6 96 53.1
BcaB02g10688 Brassica carinata HOM05D005070 ORTHO05D005987 4.7e-19 97.8 91 58.2
BolC3t19504H Brassica oleracea HOM05D005070 ORTHO05D005987 4.7e-19 97.8 93 57.0
BcaC01g01772 Brassica carinata HOM05D005070 ORTHO05D005987 6.2e-19 97.4 93 55.9
C03p72060 Brassica napus HOM05D005070 ORTHO05D005987 6.2e-19 97.4 93 55.9
Lsat_1_v5_gn_4_72681 Lactuca sativa HOM05D005070 ORTHO05D005987 8.1e-19 97.1 97 55.7
CDE10G1084 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 1.8e-18 95.9 102 52.9
MBI02_g26995_MAGBIO Magnolia biondii HOM05D005070 ORTHO05D005987 1.5e-17 92.8 76 57.9
HanXRQChr09g0271731 Helianthus annuus HOM05D005070 ORTHO05D005987 2.0e-17 92.4 97 51.5
BcaC01g02293 Brassica carinata HOM05D005070 ORTHO05D005987 3.4e-17 91.7 91 54.9
C03p66960 Brassica napus HOM05D005070 ORTHO05D005987 3.4e-17 91.7 91 54.9
BolC3t18969H Brassica oleracea HOM05D005070 ORTHO05D005987 3.4e-17 91.7 91 54.9
ClCG06G016770 Citrullus lanatus HOM05D005070 ORTHO05D005987 1.7e-16 89.4 71 62.0
ECA232G1832 Erigeron canadensis HOM05D005070 ORTHO05D005987 1.7e-16 89.4 98 54.1
EL10Ac5g10819 Beta vulgaris HOM05D005070 ORTHO05D005987 1.1e-15 86.7 92 50.0
Psat7g153800 Pisum sativum HOM05D005070 ORTHO05D005987 1.1e-15 86.7 77 59.7
CDE10G1207 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 1.4e-15 86.3 84 51.2
ATR1149G117 Amborella trichopoda HOM05D005070 ORTHO05D005987 1.9e-15 85.9 84 53.6
Haze_07448 Corylus avellana HOM05D005070 ORTHO05D005987 4.1e-15 84.7 78 59.0
Psat7g156680 Pisum sativum HOM05D005070 ORTHO05D005987 5.4e-15 84.3 76 59.2
Rhsim12G0162300 Rhododendron simsii HOM05D005070 ORTHO05D005987 5.4e-15 84.3 59 71.2
DCAR_031298 Daucus carota HOM05D005070 ORTHO05D005987 7.1e-15 84.0 93 53.8
DCAR_026116 Daucus carota HOM05D000306 ORTHO05D005987 3.5e-14 81.6 71 59.2
SalBow3G2397 Salvia bowleyana HOM05D005070 ORTHO05D005987 4.6e-14 81.3 75 58.7
arahy.Tifrunner.gnm1.ann1.HW74CG Arachis hypogaea HOM05D005070 ORTHO05D005987 2.5e-12 75.5 108 42.6
arahy.Tifrunner.gnm1.ann1.K5B2QX Arachis hypogaea HOM05D005070 ORTHO05D005987 4.3e-12 74.7 108 41.7
AUR62008276 Chenopodium quinoa HOM05D005070 ORTHO05D005987 7.3e-12 73.9 101 45.5
PGSC0003DMG400027010 Solanum tuberosum HOM05D000366 ORTHO05D001950 9.6e-12 73.6 65 60.0
HPP92_017066 Vanilla planifolia HOM05D005070 ORTHO05D005987 2.1e-11 72.4 90 45.6
PSO832G4075 Papaver somniferum HOM05D005070 ORTHO05D005987 8.1e-11 70.5 87 49.4
BolC8t49547H Brassica oleracea HOM05D000130 ORTHO05D000001 1.4e-10 69.7 75 52.0
Manes.14G069501 Manihot esculenta HOM05D005070 ORTHO05D005987 1.4e-10 69.7 98 46.9
PSO017G3759 Papaver somniferum HOM05D005070 ORTHO05D005987 2.4e-10 68.9 88 47.7
C08p19280 Brassica napus HOM05D000130 ORTHO05D000257 5.2e-10 67.8 85 49.4
PSO063G7000 Papaver somniferum HOM05D005070 ORTHO05D005987 1.5e-09 66.2 87 49.4
SEGI_14877 Sequoiadendron giganteum HOM05D005070 ORTHO05D005987 2.0e-09 65.9 51 54.9
PSO478G4659 Papaver somniferum HOM05D005070 ORTHO05D005987 3.4e-09 65.1 87 44.8
Zm00001eb311750 Zea mays HOM05D005070 ORTHO05D005987 4.4e-09 64.7 57 54.4
arahy.Tifrunner.gnm1.ann1.67M40U Arachis hypogaea HOM05D005070 ORTHO05D005987 1.7e-08 62.8 57 50.9
Mapoly0038s0062 Marchantia polymorpha HOM05D005070 ORTHO05D005987 2.9e-08 62.0 73 47.9
Os09g0382500 Oryza sativa ssp. japonica HOM05D005070 ORTHO05D005987 2.9e-08 62.0 80 47.5
Zm00001eb098990 Zea mays HOM05D005070 ORTHO05D005987 8.4e-08 60.5 58 50.0
HPP92_017347 Vanilla planifolia HOM05D005070 ORTHO05D005987 1.1e-07 60.1 54 55.6
MBI18_g17201_MAGBIO Magnolia biondii HOM05D002807 ORTHO05D005987 7.8e-06 53.9 54 46.3


User provided reference genes

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