Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g16120 Fragaria vesca HOM05D003584 ORTHO05D004148 2.5e-42 174.9 80 100.0
FvH4_5g23300 Fragaria vesca HOM05D003584 ORTHO05D004148 3.4e-23 111.3 73 74.0
FAN18G0612 Fragaria x ananassa HOM05D003584 ORTHO05D004148 3.4e-23 111.3 73 74.0
FAN18G4458 Fragaria x ananassa HOM05D003584 ORTHO05D004148 3.4e-23 111.3 73 74.0
FAN04G2190 Fragaria x ananassa HOM05D003584 ORTHO05D004148 4.5e-23 110.9 73 74.0
FAN08G3577 Fragaria x ananassa HOM05D003584 ORTHO05D004148 1.0e-22 109.8 73 72.6
FAN13G0019 Fragaria x ananassa HOM05D003584 ORTHO05D004148 1.0e-22 109.8 73 72.6
RcHm_v2.0_Chr7g0212251 Rosa chinensis HOM05D003584 ORTHO05D004148 3.0e-19 98.2 57 77.2
QL12p001817 Quercus lobata HOM05D003584 ORTHO05D004148 7.4e-18 93.6 57 71.9
MD09G1247700 Malus domestica HOM05D003584 ORTHO05D004148 9.7e-18 93.2 50 84.0
PGR042G1012 Punica granatum HOM05D003584 ORTHO05D004148 9.7e-18 93.2 50 80.0
DCAR_004572 Daucus carota HOM05D003584 ORTHO05D004148 1.7e-17 92.4 57 70.2
Prupe.5G026300 Prunus persica HOM05D003584 ORTHO05D004148 1.7e-17 92.4 50 82.0
Haze_08130 Corylus avellana HOM05D003584 ORTHO05D004148 2.2e-17 92.0 57 70.2
Solyc08g076140.3 Solanum lycopersicum HOM05D003584 ORTHO05D004148 2.2e-17 92.0 57 66.7
Sopen08g024780 Solanum pennellii HOM05D003584 ORTHO05D004148 2.2e-17 92.0 57 66.7
PGSC0003DMG400009321 Solanum tuberosum HOM05D003584 ORTHO05D004148 2.2e-17 92.0 57 66.7
vmacro00245 Vaccinium macrocarpon HOM05D003584 ORTHO05D004148 2.2e-17 92.0 57 66.7
Ciclev10000923m.g Citrus clementina HOM05D003584 ORTHO05D004148 2.8e-17 91.7 57 66.7
Manes.08G071412 Manihot esculenta HOM05D003584 ORTHO05D004148 3.7e-17 91.3 50 78.0
Rhsim11G0029400 Rhododendron simsii HOM05D003584 ORTHO05D004148 3.7e-17 91.3 50 76.0
CiPaw.11G099800 Carya illinoinensis HOM05D003584 ORTHO05D004148 4.8e-17 90.9 57 70.2
Potri.003G098100 Populus trichocarpa HOM05D003584 ORTHO05D004148 4.8e-17 90.9 59 66.1
MELO3C003445.2 Cucumis melo HOM05D003584 ORTHO05D004148 8.2e-17 90.1 57 64.9
HanXRQChr03g0082001 Helianthus annuus HOM05D003584 ORTHO05D004148 8.2e-17 90.1 57 64.9
DCAR_004587 Daucus carota HOM05D003584 ORTHO05D004148 1.1e-16 89.7 57 68.4
Lj8C319G15 Lonicera japonica HOM05D003584 ORTHO05D004148 1.1e-16 89.7 57 66.7
SGA_v2.0_scaffold111G31387 Striga asiatica HOM05D003584 ORTHO05D004148 1.1e-16 89.7 57 66.7
Atru.chr6.1539 Acer truncatum HOM05D003584 ORTHO05D004148 1.8e-16 89.0 57 64.9
Cpa.g.sc16.4 Carica papaya HOM05D003584 ORTHO05D004148 1.8e-16 89.0 57 64.9
MSTRG.1794 Avicennia marina HOM05D003584 ORTHO05D004148 2.4e-16 88.6 57 64.9
CsaV3_3G048780 Cucumis sativus L. HOM05D003584 ORTHO05D004148 2.4e-16 88.6 57 63.2
Sed0004953 Sechium edule HOM05D003584 ORTHO05D004148 2.4e-16 88.6 59 62.7
CSS0011945 Camellia sinensis var. sinensis HOM05D003584 ORTHO05D004148 3.1e-16 88.2 57 63.2
Medtr3g091190 Medicago truncatula HOM05D003584 ORTHO05D004148 3.1e-16 88.2 52 71.2
TPR.G17292 Trifolium pratense HOM05D003584 ORTHO05D004148 3.1e-16 88.2 59 62.7
TWI81G0829 Tripterygium wilfordii HOM05D003584 ORTHO05D004148 3.1e-16 88.2 57 64.9
CSS0018892 Camellia sinensis var. sinensis HOM05D003584 ORTHO05D004148 4.1e-16 87.8 50 72.0
CAN.G773.27 Capsicum annuum HOM05D003584 ORTHO05D004148 4.1e-16 87.8 50 72.0
Peaxi162Scf00052g00324 Petunia axillaris HOM05D003584 ORTHO05D004148 4.1e-16 87.8 50 72.0
Psat5g079040 Pisum sativum HOM05D003584 ORTHO05D004148 4.1e-16 87.8 59 61.0
unitig_748.g7408 Utricularia gibba HOM05D003584 ORTHO05D004148 4.1e-16 87.8 50 72.0
Atru.chr7.1538 Acer truncatum HOM05D003584 ORTHO05D004148 5.3e-16 87.4 57 64.9
Ca_16694_v3 Cicer arietinum L. HOM05D003584 ORTHO05D004148 5.3e-16 87.4 59 61.0
Duzib205G2005 Durio zibethinus HOM05D003584 ORTHO05D004148 5.3e-16 87.4 50 74.0
THA.LOC104798509 Tarenaya hassleriana HOM05D003584 ORTHO05D004148 5.3e-16 87.4 57 63.2
Nn1g01892 Nelumbo nucifera HOM05D003584 ORTHO05D004148 7.0e-16 87.0 57 63.2
Sabra03G0066500 Salix brachista HOM05D003584 ORTHO05D004148 9.1e-16 86.7 57 66.7
A08p09410 Brassica napus HOM05D003584 ORTHO05D004148 1.2e-15 86.3 57 64.9
ClCG09G011560 Citrullus lanatus HOM05D003584 ORTHO05D004148 1.2e-15 86.3 57 61.4
Nitab4.5_0028488g0010 Nicotiana tabacum HOM05D003584 ORTHO05D004148 1.2e-15 86.3 57 61.4
TAR375G1157 Trochodendron aralioides HOM05D003584 ORTHO05D004148 1.2e-15 86.3 50 72.0
Potri.001G135500 Populus trichocarpa HOM05D003584 ORTHO05D004148 1.6e-15 85.9 57 66.7
AUR62007367 Chenopodium quinoa HOM05D003584 ORTHO05D004148 2.0e-15 85.5 50 72.0
Duzib084G0829 Durio zibethinus HOM05D003584 ORTHO05D004148 2.0e-15 85.5 50 70.0
Gohir.D12G207800 Gossypium hirsutum HOM05D003584 ORTHO05D004148 2.0e-15 85.5 50 70.0
Gorai.008G223300 Gossypium raimondii HOM05D003584 ORTHO05D004148 2.0e-15 85.5 50 70.0
Thecc.03G311600 Theobroma cacao HOM05D003584 ORTHO05D004148 2.0e-15 85.5 50 70.0
CAN.G474.24 Capsicum annuum HOM05D003584 ORTHO05D004148 2.6e-15 85.1 50 68.0
Lj1g0024878 Lotus japonicus HOM05D003584 ORTHO05D004148 2.6e-15 85.1 57 61.4
Peaxi162Scf00185g01121 Petunia axillaris HOM05D003584 ORTHO05D004148 2.6e-15 85.1 57 59.6
TAR636G2924 Trochodendron aralioides HOM05D003584 ORTHO05D004148 2.6e-15 85.1 57 61.4
BcaB04g18004 Brassica carinata HOM05D003584 ORTHO05D004148 3.5e-15 84.7 57 63.2
CDE03G0071 Ceratophyllum demersum HOM05D003584 ORTHO05D004148 3.5e-15 84.7 57 59.6
TWI60G0249 Tripterygium wilfordii HOM05D003584 ORTHO05D004148 3.5e-15 84.7 57 63.2
GSVIVG01013024001 Vitis vinifera HOM05D003584 ORTHO05D004148 3.5e-15 84.7 57 63.2
AL1G46000 Arabidopsis lyrata HOM05D003584 ORTHO05D004148 4.5e-15 84.3 57 61.4
Eucgr.E01312 Eucalyptus grandis HOM05D003584 ORTHO05D004148 4.5e-15 84.3 57 61.4
Nitab4.5_0011549g0010 Nicotiana tabacum HOM05D003584 ORTHO05D004148 4.5e-15 84.3 50 72.0
Phvul.009G055300 Phaseolus vulgaris HOM05D003584 ORTHO05D004148 4.5e-15 84.3 52 71.2
COL.COLO4_16918 Corchorus olitorius HOM05D003584 ORTHO05D004148 5.9e-15 84.0 50 68.0
DCAR_004571 Daucus carota HOM05D003584 ORTHO05D004148 5.9e-15 84.0 53 69.8
VMungo1309G1861 Vigna mungo HOM05D003584 ORTHO05D004148 5.9e-15 84.0 52 69.2
Carub.0001s3023 Capsella rubella HOM05D003584 ORTHO05D004148 7.7e-15 83.6 57 61.4
Sp1g27630 Schrenkiella parvula HOM05D003584 ORTHO05D004148 7.7e-15 83.6 57 61.4
Sc07g0008560 Simmondsia chinensis HOM05D003584 ORTHO05D004148 7.7e-15 83.6 50 72.0
Aa31LG2G14140 Aethionema arabicum HOM05D003584 ORTHO05D004148 1.0e-14 83.2 57 61.4
AT1G31910 Arabidopsis thaliana HOM05D003584 ORTHO05D004148 1.0e-14 83.2 57 59.6
CARHR031250 Cardamine hirsuta HOM05D003584 ORTHO05D004148 1.0e-14 83.2 50 70.0
ECA240G0026 Erigeron canadensis HOM05D003584 ORTHO05D004148 1.0e-14 83.2 58 56.9
Solyc06g066310.3 Solanum lycopersicum HOM05D003584 ORTHO05D004148 1.0e-14 83.2 57 59.6
AUR62018622 Chenopodium quinoa HOM05D003584 ORTHO05D004148 1.3e-14 82.8 50 70.0
Migut.A00606 Erythranthe guttata HOM05D003584 ORTHO05D004148 1.3e-14 82.8 57 59.6
Gohir.A12G205400 Gossypium hirsutum HOM05D003584 ORTHO05D004148 1.3e-14 82.8 50 68.0
BcaC07g37640 Brassica carinata HOM05D003584 ORTHO05D004148 2.2e-14 82.0 57 61.4
Cc08_g03790 Coffea canephora HOM05D003584 ORTHO05D004148 2.2e-14 82.0 45 73.3
Cc08_g04670 Coffea canephora HOM05D003584 ORTHO05D004148 2.2e-14 82.0 45 73.3
Ah.12g055580 Amaranthus hybridus HOM05D003584 ORTHO05D004148 2.9e-14 81.6 50 66.0
Aqoxy2G01071 Aquilegia oxysepala HOM05D003584 ORTHO05D004148 2.9e-14 81.6 50 70.0
Hund11168 Selenicereus undatus HOM05D003584 ORTHO05D004148 2.9e-14 81.6 50 68.0
HPP92_020889 Vanilla planifolia HOM05D003584 ORTHO05D004148 2.9e-14 81.6 57 61.4
MD17G1240600 Malus domestica HOM05D003584 ORTHO05D004148 3.8e-14 81.3 50 78.0
Sopen06g021710 Solanum pennellii HOM05D003584 ORTHO05D004148 3.8e-14 81.3 57 57.9
Migut.E01323 Erythranthe guttata HOM05D003584 ORTHO05D004148 5.0e-14 80.9 57 61.4
Mapoly0108s0066 Marchantia polymorpha HOM05D003584 ORTHO05D004148 6.5e-14 80.5 57 54.4
SalBow8G3982 Salvia bowleyana HOM05D003584 ORTHO05D004148 6.5e-14 80.5 58 60.3
Glyma.06G127200 Glycine max HOM05D003584 ORTHO05D004148 8.5e-14 80.1 47 70.2
Oeu023587.1 Olea europaea HOM05D003584 ORTHO05D004148 8.5e-14 80.1 45 68.9
BraA08t32940Z Brassica rapa HOM05D003584 ORTHO05D004148 1.1e-13 79.7 45 73.3
Lsat_1_v5_gn_6_73200 Lactuca sativa HOM05D003584 ORTHO05D004148 1.1e-13 79.7 57 57.9
Oeu031077.4 Olea europaea HOM05D003584 ORTHO05D004148 1.1e-13 79.7 45 68.9
ATR0796G169 Amborella trichopoda HOM05D003584 ORTHO05D004148 1.9e-13 79.0 70 52.9
arahy.Tifrunner.gnm1.ann1.A68QNY Arachis hypogaea HOM05D003584 ORTHO05D004148 2.5e-13 78.6 53 64.2
CANSAT21G2152 Cannabis sativa HOM05D003584 ORTHO05D004148 2.5e-13 78.6 57 61.4
Glyma.04G237000 Glycine max HOM05D003584 ORTHO05D004148 3.2e-13 78.2 46 73.9
Lalb_Chr11g0066741 Lupinus albus HOM05D003584 ORTHO05D004148 4.2e-13 77.8 50 66.0
Os03g0253100 Oryza sativa ssp. japonica HOM05D003584 ORTHO05D004148 5.5e-13 77.4 50 66.0
Dinv29018 Davidia involucrata HOM05D003584 ORTHO05D004148 7.2e-13 77.0 45 71.1
PSO017G0107 Papaver somniferum HOM05D003584 ORTHO05D004148 1.2e-12 76.3 50 66.0
PSO170G5482 Papaver somniferum HOM05D003584 ORTHO05D004148 1.6e-12 75.9 50 66.0
BolC8t48013H Brassica oleracea HOM05D003584 ORTHO05D004148 2.1e-12 75.5 45 68.9
Zm00001eb010900 Zea mays HOM05D003584 ORTHO05D004148 2.1e-12 75.5 50 62.0
Pp3c6_2460 Physcomitrium patens HOM05D003584 ORTHO05D004148 3.6e-12 74.7 56 48.2
Actinidia14775 Actinidia chinensis HOM05D003584 ORTHO05D004148 4.7e-12 74.3 53 60.4
Actinidia18138 Actinidia chinensis HOM05D003584 ORTHO05D004148 4.7e-12 74.3 53 60.4
Dinv06917 Davidia involucrata HOM05D003584 ORTHO05D004148 4.7e-12 74.3 44 70.5
Thhalv10007477m.g Eutrema salsugineum HOM05D003584 ORTHO05D004148 6.1e-12 73.9 53 60.4
Nitab4.5_0002429g0030 Nicotiana tabacum HOM05D003584 ORTHO05D008233 1.4e-11 72.8 41 70.7
EL10Ac5g11993 Beta vulgaris HOM05D003584 ORTHO05D004148 3.0e-11 71.6 46 67.4
AagrBONN_evm.TU.Sc2ySwM_368.333 Anthoceros agrestis HOM05D003584 ORTHO05D004148 1.1e-10 69.7 50 56.0
ClCG10G001230 Citrullus lanatus HOM05D003584 ORTHO05D004148 2.0e-10 68.9 53 60.4
Nitab4.5_0002897g0020 Nicotiana tabacum HOM05D003584 ORTHO05D004148 2.0e-10 68.9 50 58.0
Lsat_1_v5_gn_0_9341 Lactuca sativa HOM05D003584 ORTHO05D004148 5.7e-10 67.4 56 55.4
Rhsim07G0134000 Rhododendron simsii HOM05D003584 ORTHO05D004148 9.7e-10 66.6 53 54.7
HanXRQChr06g0175511 Helianthus annuus HOM05D003584 ORTHO05D004148 6.3e-09 63.9 51 51.0
vmacro14207 Vaccinium macrocarpon HOM05D003584 ORTHO05D004148 8.2e-09 63.5 58 50.0
vmacro22392 Vaccinium macrocarpon HOM05D003584 ORTHO05D004148 9.1e-08 60.1 37 70.3
SMO351G0538 Selaginella moellendorffii HOM05D003584 ORTHO05D004148 2.0e-07 58.9 52 53.8
ECA246G3990 Erigeron canadensis HOM05D003584 ORTHO05D004148 2.7e-07 58.5 44 56.8
MBI16_g31266_MAGBIO Magnolia biondii HOM05D003584 ORTHO05D004148 4.5e-07 57.8 36 61.1
CBR_g54890 Chara braunii HOM05D001740 ORTHO05D001468 2.9e-06 55.1 39 66.7


User provided reference genes

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