Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g15910 Fragaria vesca HOM05D006327 ORTHO05D007952 2.4e-185 652.1 356 100.0
FAN18G0307 Fragaria x ananassa HOM05D006327 ORTHO05D007952 7.5e-179 630.6 356 94.9
FAN04G1419 Fragaria x ananassa HOM05D006327 ORTHO05D007952 1.4e-177 626.3 356 94.1
FAN13G1795 Fragaria x ananassa HOM05D006327 ORTHO05D007952 7.8e-176 620.5 356 93.0
FAN08G2893 Fragaria x ananassa HOM05D006327 ORTHO05D007952 1.6e-173 612.8 356 93.3
RcHm_v2.0_Chr7g0180141 Rosa chinensis HOM05D006327 ORTHO05D007952 2.3e-159 565.8 358 85.2
Prupe.5G183400 Prunus persica HOM05D006327 ORTHO05D007952 2.2e-122 443.0 367 69.5
MD06G1184600 Malus domestica HOM05D006327 ORTHO05D007952 1.9e-121 439.9 367 69.8
MD14G1190500 Malus domestica HOM05D006327 ORTHO05D007952 8.8e-111 404.4 369 65.3
Cfa019028 Carpinus fangiana HOM05D006327 ORTHO05D007952 9.4e-97 357.8 362 59.9
Haze_07403 Corylus avellana HOM05D006327 ORTHO05D007952 1.0e-95 354.4 363 62.3
Thecc.K0000500 Theobroma cacao HOM05D006327 ORTHO05D007952 3.7e-93 345.9 361 59.8
Actinidia34971 Actinidia chinensis HOM05D006327 ORTHO05D007952 2.2e-90 336.7 374 59.6
Manes.14G072700 Manihot esculenta HOM05D006327 ORTHO05D007952 3.8e-90 335.9 372 55.6
GSVIVG01008091001 Vitis vinifera HOM05D006327 ORTHO05D007952 8.5e-90 334.7 370 56.8
QL10p014464 Quercus lobata HOM05D006327 ORTHO05D007952 1.6e-88 330.5 367 56.7
Gohir.A13G087700 Gossypium hirsutum HOM05D006327 ORTHO05D007952 6.1e-88 328.6 365 55.9
Ciclev10020740m.g Citrus clementina HOM05D006327 ORTHO05D007952 1.0e-87 327.8 368 54.6
Duzib205G1023 Durio zibethinus HOM05D006327 ORTHO05D007952 3.0e-87 326.2 362 58.3
Gohir.D13G092100 Gossypium hirsutum HOM05D006327 ORTHO05D007952 4.0e-87 325.9 360 55.8
Gorai.010G139000 Gossypium raimondii HOM05D006327 ORTHO05D007952 4.4e-86 322.4 360 55.6
CSS0041426 Camellia sinensis var. sinensis HOM05D006327 ORTHO05D007952 1.3e-85 320.9 367 53.7
COL.COLO4_21256 Corchorus olitorius HOM05D006327 ORTHO05D007952 1.7e-85 320.5 381 56.2
Hma1.2p1_0572F.1_g181140 Hydrangea macrophylla HOM05D006327 ORTHO05D007952 2.0e-83 313.5 362 56.9
Potri.012G072600 Populus trichocarpa HOM05D006327 ORTHO05D007952 1.7e-82 310.5 364 55.2
TAR629G2492 Trochodendron aralioides HOM05D006327 ORTHO05D007952 8.0e-80 301.6 396 53.3
EL10Ac5g10880 Beta vulgaris HOM05D006327 ORTHO05D007952 1.4e-79 300.8 381 53.0
ClCG06G016530 Citrullus lanatus HOM05D006327 ORTHO05D007952 1.8e-79 300.4 375 53.9
vmacro16576 Vaccinium macrocarpon HOM05D006327 ORTHO05D007952 3.0e-79 299.7 361 56.2
AUR62008321 Chenopodium quinoa HOM05D006327 ORTHO05D007952 8.8e-79 298.1 357 55.5
Lalb_Chr11g0071521 Lupinus albus HOM05D006327 ORTHO05D007952 8.8e-79 298.1 364 53.3
VMungo1309G2881 Vigna mungo HOM05D006327 ORTHO05D007952 5.7e-78 295.4 358 52.8
Sed0003639 Sechium edule HOM05D006327 ORTHO05D007952 7.5e-78 295.0 365 54.8
Hund09383 Selenicereus undatus HOM05D006327 ORTHO05D007952 3.7e-77 292.7 360 53.6
Phvul.009G183700 Phaseolus vulgaris HOM05D006327 ORTHO05D007952 4.9e-77 292.4 367 52.3
arahy.Tifrunner.gnm1.ann1.RDR8CP Arachis hypogaea HOM05D006327 ORTHO05D007952 6.3e-77 292.0 365 52.9
CsaV3_1G001980 Cucumis sativus L. HOM05D006327 ORTHO05D007952 6.3e-77 292.0 370 51.9
arahy.Tifrunner.gnm1.ann1.Y9A7HY Arachis hypogaea HOM05D006327 ORTHO05D007952 1.1e-76 291.2 364 56.0
Lj9A456G27 Lonicera japonica HOM05D006327 ORTHO05D007952 4.1e-76 289.3 382 53.1
Glyma.06G188300 Glycine max HOM05D006327 ORTHO05D007952 1.0e-74 284.6 362 53.6
Glyma.04G176800 Glycine max HOM05D006327 ORTHO05D007952 1.9e-73 280.4 362 53.6
Medtr0168s0110 Medicago truncatula HOM05D006327 ORTHO05D007952 5.6e-73 278.9 360 54.2
Nn4g22987 Nelumbo nucifera HOM05D006327 ORTHO05D007952 9.5e-73 278.1 398 46.5
MELO3C017142.2 Cucumis melo HOM05D006327 ORTHO05D007952 2.1e-72 276.9 431 45.5
DCAR_021548 Daucus carota HOM05D006327 ORTHO05D007952 2.1e-72 276.9 356 50.6
Lj1g0017631 Lotus japonicus HOM05D006327 ORTHO05D007952 2.8e-72 276.6 367 55.9
CANSAT80G2449 Cannabis sativa HOM05D006327 ORTHO05D007952 4.7e-72 275.8 458 47.4
Eucgr.B00389 Eucalyptus grandis HOM05D006327 ORTHO05D007952 5.2e-71 272.3 369 51.5
TWI81G1080 Tripterygium wilfordii HOM05D006327 ORTHO05D007952 6.8e-71 271.9 358 52.2
TPR.G11929 Trifolium pratense HOM05D006327 ORTHO05D007952 4.4e-70 269.2 359 52.9
DCAR_016525 Daucus carota HOM05D006327 ORTHO05D007952 4.9e-69 265.8 361 52.1
Nitab4.5_0000003g0110 Nicotiana tabacum HOM05D006327 ORTHO05D007952 5.0e-66 255.8 360 50.8
AUR62021775 Chenopodium quinoa HOM05D006327 ORTHO05D007952 8.6e-66 255.0 361 50.7
Ah.02g112960 Amaranthus hybridus HOM05D006327 ORTHO05D007952 1.5e-65 254.2 363 48.8
Nitab4.5_0000758g0030 Nicotiana tabacum HOM05D006327 ORTHO05D007952 3.3e-65 253.1 360 51.4
Sabra12G0051800 Salix brachista HOM05D006327 ORTHO05D007952 3.1e-63 246.5 294 51.7
Migut.I00102 Erythranthe guttata HOM05D006327 ORTHO05D007952 4.0e-63 246.1 369 47.2
Lsat_1_v5_gn_5_17580 Lactuca sativa HOM05D006327 ORTHO05D007952 2.6e-62 243.4 378 47.4
Peaxi162Scf00689g00562 Petunia axillaris HOM05D006327 ORTHO05D007952 3.7e-61 239.6 358 48.3
CiPaw.12G020800 Carya illinoinensis HOM05D006327 ORTHO05D007952 4.9e-61 239.2 290 54.8
Cc04_g16010 Coffea canephora HOM05D006327 ORTHO05D007952 4.9e-61 239.2 406 43.6
Aqoxy3G03193 Aquilegia oxysepala HOM05D006327 ORTHO05D007952 4.6e-59 232.6 421 43.2
PGSC0003DMG400033064 Solanum tuberosum HOM05D006327 ORTHO05D007952 2.3e-58 230.3 353 46.5
PGR083G2875 Punica granatum HOM05D006327 ORTHO05D007952 2.5e-57 226.9 311 51.1
HanXRQChr02g0045371 Helianthus annuus HOM05D006327 ORTHO05D007952 5.6e-57 225.7 364 46.2
Solyc06g071170.4 Solanum lycopersicum HOM05D006327 ORTHO05D007952 2.1e-56 223.8 356 46.3
Sopen06g027480 Solanum pennellii HOM05D006327 ORTHO05D007952 6.2e-56 222.2 355 45.9
THA.LOC104818247 Tarenaya hassleriana HOM05D006327 ORTHO05D007952 2.2e-53 213.8 361 44.9
Rhsim12G0160300 Rhododendron simsii HOM05D006327 ORTHO05D007952 2.4e-52 210.3 330 44.8
AT3G47850 Arabidopsis thaliana HOM05D006327 ORTHO05D007952 1.6e-51 207.6 367 44.7
Sp5g14110 Schrenkiella parvula HOM05D006327 ORTHO05D007952 6.6e-50 202.2 370 43.5
BcaC01g01770 Brassica carinata HOM05D006327 ORTHO05D007952 1.5e-49 201.1 370 42.4
C03p72080 Brassica napus HOM05D006327 ORTHO05D007952 1.5e-49 201.1 367 43.1
BolC3t19506H Brassica oleracea HOM05D006327 ORTHO05D007952 1.5e-49 201.1 370 42.4
AL5G27170 Arabidopsis lyrata HOM05D006327 ORTHO05D007952 2.5e-49 200.3 368 43.8
Carub.0005s1399 Capsella rubella HOM05D006327 ORTHO05D007952 5.6e-49 199.1 368 44.0
SGA_v2.0_scaffold56G20076 Striga asiatica HOM05D006327 ORTHO05D007952 5.6e-49 199.1 392 40.6
ECA247G1897 Erigeron canadensis HOM05D006327 ORTHO05D007881 1.4e-47 194.5 344 42.2
BcaB01g00870 Brassica carinata HOM05D006327 ORTHO05D007952 1.8e-47 194.1 377 42.7
Sed0027580 Sechium edule HOM05D006327 ORTHO05D007952 5.8e-46 189.1 287 46.3
A06p19780 Brassica napus HOM05D006327 ORTHO05D007952 1.3e-45 188.0 377 41.1
BraA06t25057Z Brassica rapa HOM05D006327 ORTHO05D007952 1.3e-45 188.0 377 41.1
PSO832G2780 Papaver somniferum HOM05D006327 ORTHO05D007952 2.9e-45 186.8 401 39.2
Hund02693 Selenicereus undatus HOM05D006327 ORTHO05D007952 2.9e-45 186.8 356 42.4
PSO591G0157 Papaver somniferum HOM05D006327 ORTHO05D007952 6.4e-45 185.7 405 39.0
BolC1t03192H Brassica oleracea HOM05D006327 ORTHO05D007952 1.1e-41 174.9 362 40.9
CDE06G0071 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 5.6e-41 172.6 368 38.3
CARHR156550 Cardamine hirsuta HOM05D006327 ORTHO05D007952 9.6e-41 171.8 380 41.1
Psat5g181760 Pisum sativum HOM05D006327 ORTHO05D007952 1.2e-40 171.4 298 43.6
Sc12g0005950 Simmondsia chinensis HOM05D006327 ORTHO05D007952 1.1e-39 168.3 376 38.0
Thhalv10010485m.g Eutrema salsugineum HOM05D006327 ORTHO05D007952 1.5e-33 147.9 300 41.7
Atru.chr9.2360 Acer truncatum HOM05D006327 ORTHO05D007952 4.3e-33 146.4 175 54.3
SGA_v2.0_scaffold25G10883 Striga asiatica HOM05D006327 ORTHO05D007952 2.4e-31 140.6 360 37.8
HPP92_015937 Vanilla planifolia HOM05D006327 ORTHO05D007952 3.4e-30 136.7 356 37.1
Aa31LG4G16510 Aethionema arabicum HOM05D006327 ORTHO05D007952 4.5e-30 136.3 399 34.6
BcaB05g23082 Brassica carinata HOM05D006327 ORTHO05D007952 9.9e-30 135.2 339 37.8
unitig_61.g26481 Utricularia gibba HOM05D006327 ORTHO05D007952 1.7e-29 134.4 358 33.2
HPP92_015918 Vanilla planifolia HOM05D006327 ORTHO05D007952 4.9e-29 132.9 362 35.6
Dinv19897 Davidia involucrata HOM05D006327 ORTHO05D007952 2.1e-27 127.5 356 34.8
Os05g0220900 Oryza sativa ssp. japonica HOM05D006327 ORTHO05D007952 2.3e-26 124.0 356 34.3
Zm00001eb053670 Zea mays HOM05D006327 ORTHO05D007952 3.9e-26 123.2 363 34.2
CDE08G0244 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 5.1e-26 122.9 198 43.9
Actinidia19065 Actinidia chinensis HOM05D006327 ORTHO05D007952 1.9e-25 120.9 311 36.0
SEGI_36963 Sequoiadendron giganteum HOM05D006327 ORTHO05D007952 1.4e-20 104.8 379 32.2
ATR0665G137 Amborella trichopoda HOM05D006327 ORTHO05D007952 7.4e-17 92.4 125 44.8
Cpa.g.c28309.3 Carica papaya HOM05D006327 ORTHO05D007952 3.1e-15 87.0 49 85.7
Cpa.g.sc939.1 Carica papaya HOM05D006327 ORTHO05D007952 1.2e-14 85.1 68 70.6
Nn5g29700 Nelumbo nucifera HOM05D006327 ORTHO05D007952 4.5e-14 83.2 46 84.8
Nn5g29803 Nelumbo nucifera HOM05D006327 ORTHO05D007952 4.5e-14 83.2 46 84.8
Nn4g25043 Nelumbo nucifera HOM05D006327 ORTHO05D007952 5.8e-14 82.8 46 84.8
Sc12g0005960 Simmondsia chinensis HOM05D006327 ORTHO05D007952 7.6e-14 82.4 45 84.4
Nn5g29485 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.3e-13 81.6 46 82.6
Nn2g11504 Nelumbo nucifera HOM05D006327 ORTHO05D007952 3.8e-13 80.1 45 82.2
Nn2g11507 Nelumbo nucifera HOM05D006327 ORTHO05D007952 3.8e-13 80.1 45 82.2
Nn1g09464 Nelumbo nucifera HOM05D006327 ORTHO05D007952 8.4e-13 79.0 46 82.6
Nn6g34101 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.4e-12 78.2 46 80.4
Nn1g07420 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.9e-12 77.8 46 80.4
SMO361G0693 Selaginella moellendorffii HOM05D006327 ORTHO05D007952 6.0e-11 72.8 201 31.3
ATR0665G641 Amborella trichopoda HOM05D006327 ORTHO05D007952 2.3e-10 70.9 45 71.1
SMO361G0449 Selaginella moellendorffii HOM05D063101 ORTHO05D007952 1.9e-09 67.8 203 36.0
MSTRG.11411 Avicennia marina HOM05D006327 ORTHO05D007952 4.3e-09 66.6 86 40.7
Oeu035426.1 Olea europaea HOM05D006327 ORTHO05D007952 1.1e-07 62.0 168 33.9
BcaNung06177 Brassica carinata HOM05D006327 ORTHO05D007952 4.5e-06 56.6 67 52.2


User provided reference genes

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