Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g15741 Fragaria vesca HOM05D003570 ORTHO05D004207 5.9e-77 290.8 148 100.0
FAN18G0384 Fragaria x ananassa HOM05D003570 ORTHO05D004207 3.9e-65 251.5 131 97.7
FAN08G0154 Fragaria x ananassa HOM05D003570 ORTHO05D004207 8.3e-47 190.7 129 79.1
FvH4_4g25360 Fragaria vesca HOM05D003570 ORTHO05D004207 3.3e-35 152.1 171 57.9
FAN12G2286 Fragaria x ananassa HOM05D003570 ORTHO05D004207 3.3e-35 152.1 171 57.9
FAN07G1326 Fragaria x ananassa HOM05D003570 ORTHO05D004207 2.1e-34 149.4 171 56.7
RcHm_v2.0_Chr4g0432651 Rosa chinensis HOM05D003570 ORTHO05D004207 4.7e-34 148.3 171 56.1
FAN17G0862 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.4e-33 146.7 171 55.6
FAN22G0389 Fragaria x ananassa HOM05D003570 ORTHO05D004207 4.0e-33 145.2 171 55.6
FAN13G1935 Fragaria x ananassa HOM05D003570 ORTHO05D004207 5.0e-28 128.3 72 94.4
Prupe.1G241900 Prunus persica HOM05D003570 ORTHO05D004207 4.1e-22 108.6 170 48.2
Haze_12279 Corylus avellana HOM05D003570 ORTHO05D004207 9.9e-16 87.4 168 40.5
CANSAT11G1164 Cannabis sativa HOM05D003570 ORTHO05D004207 2.2e-15 86.3 170 38.2
Duzib248G0757 Durio zibethinus HOM05D003570 ORTHO05D004207 2.2e-15 86.3 170 40.6
Gohir.A04G137200 Gossypium hirsutum HOM05D003570 ORTHO05D004207 2.2e-15 86.3 152 40.1
COL.COLO4_23499 Corchorus olitorius HOM05D003570 ORTHO05D004207 3.7e-15 85.5 148 41.2
Gohir.D04G180400 Gossypium hirsutum HOM05D003570 ORTHO05D004207 1.9e-14 83.2 151 39.7
THA.LOC104805269 Tarenaya hassleriana HOM05D003570 ORTHO05D004207 9.2e-14 80.9 169 34.9
TAR622G0746 Trochodendron aralioides HOM05D003570 ORTHO05D004207 1.6e-13 80.1 166 37.3
CiPaw.06G064800 Carya illinoinensis HOM05D003570 ORTHO05D004207 2.1e-13 79.7 166 38.6
Rhsim12G0107900 Rhododendron simsii HOM05D003570 ORTHO05D004207 2.1e-13 79.7 162 36.4
Potri.008G183500 Populus trichocarpa HOM05D003570 ORTHO05D004207 2.7e-13 79.3 164 36.0
GSVIVG01000572001 Vitis vinifera HOM05D003570 ORTHO05D004207 2.7e-13 79.3 166 38.0
QL03p056574 Quercus lobata HOM05D003570 ORTHO05D004207 3.5e-13 79.0 141 39.7
Dinv11043 Davidia involucrata HOM05D003570 ORTHO05D004207 4.6e-13 78.6 169 38.5
Gorai.012G173500 Gossypium raimondii HOM05D003570 ORTHO05D004207 4.6e-13 78.6 152 39.5
MD13G1104500 Malus domestica HOM05D003570 ORTHO05D004207 4.6e-13 78.6 86 58.1
TPR.G35967 Trifolium pratense HOM05D003570 ORTHO05D004207 6.0e-13 78.2 175 32.0
Glyma.11G244100 Glycine max HOM05D003570 ORTHO05D004207 7.8e-13 77.8 172 38.4
Phvul.001G256000 Phaseolus vulgaris HOM05D003570 ORTHO05D004207 7.8e-13 77.8 152 38.2
Thecc.02G265200 Theobroma cacao HOM05D003570 ORTHO05D004207 7.8e-13 77.8 150 35.3
VMungo1383G2895 Vigna mungo HOM05D003570 ORTHO05D004207 7.8e-13 77.8 152 38.2
Eucgr.B03244 Eucalyptus grandis HOM05D003570 ORTHO05D004207 1.7e-12 76.6 164 36.6
PGR102G1250 Punica granatum HOM05D003570 ORTHO05D004207 3.0e-12 75.9 160 36.9
Lj6g0027950 Lotus japonicus HOM05D003570 ORTHO05D004207 6.6e-12 74.7 167 36.5
Psat5g092360 Pisum sativum HOM05D003570 ORTHO05D004207 6.6e-12 74.7 168 34.5
CiPaw.02G032100 Carya illinoinensis HOM05D003570 ORTHO05D004207 1.1e-11 73.9 136 39.0
arahy.Tifrunner.gnm1.ann1.8897EQ Arachis hypogaea HOM05D003570 ORTHO05D004207 1.5e-11 73.6 145 35.2
Cpa.g.sc13.88 Carica papaya HOM05D003570 ORTHO05D004207 1.5e-11 73.6 169 34.9
MBI04_g13681_MAGBIO Magnolia biondii HOM05D003570 ORTHO05D004207 1.5e-11 73.6 139 39.6
Ciclev10030923m.g Citrus clementina HOM05D003570 ORTHO05D004207 1.9e-11 73.2 168 35.1
CAN.G1572.8 Capsicum annuum HOM05D003570 ORTHO05D004207 2.5e-11 72.8 147 36.1
AL1G24790 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 3.3e-11 72.4 145 31.7
Ca_25131_v3 Cicer arietinum L. HOM05D001269 ORTHO05D001083 3.3e-11 72.4 151 35.8
Medtr3g086460 Medicago truncatula HOM05D003570 ORTHO05D004207 3.3e-11 72.4 148 34.5
Nn4g22548 Nelumbo nucifera HOM05D003570 ORTHO05D004207 3.3e-11 72.4 171 38.0
Lj4g0018208 Lotus japonicus HOM05D003570 ORTHO05D004207 4.3e-11 72.0 166 34.3
ClCG05G026050 Citrullus lanatus HOM05D003570 ORTHO05D004207 1.2e-10 70.5 143 37.1
TWI36G1196 Tripterygium wilfordii HOM05D003570 ORTHO05D004207 1.6e-10 70.1 176 30.7
Actinidia37450 Actinidia chinensis HOM05D003570 ORTHO05D004207 4.7e-10 68.6 164 34.1
arahy.Tifrunner.gnm1.ann1.I1BHDP Arachis hypogaea HOM05D003570 ORTHO05D004207 6.2e-10 68.2 147 34.7
CsaV3_5G030790 Cucumis sativus L. HOM05D003570 ORTHO05D004207 6.2e-10 68.2 143 34.3
Thhalv10007079m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 6.2e-10 68.2 152 32.2
vmacro16172 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 1.1e-09 67.4 163 33.1
Manes.13G020900 Manihot esculenta HOM05D003570 ORTHO05D004207 1.4e-09 67.0 162 37.7
AT1G13120 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 1.8e-09 66.6 148 29.7
Sc04g0009680 Simmondsia chinensis HOM05D003570 ORTHO05D004207 1.8e-09 66.6 162 32.7
vmacro16170 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 1.8e-09 66.6 163 31.3
Nitab4.5_0000229g0040 Nicotiana tabacum HOM05D003570 ORTHO05D004207 2.4e-09 66.2 148 32.4
CARHR013490 Cardamine hirsuta HOM05D003570 ORTHO05D004207 3.1e-09 65.9 149 30.2
CSS0031984 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 4.0e-09 65.5 196 31.6
Nitab4.5_0002373g0110 Nicotiana tabacum HOM05D003570 ORTHO05D004207 4.0e-09 65.5 161 31.7
Nitab4.5_0004117g0010 Nicotiana tabacum HOM05D003570 ORTHO05D004207 4.0e-09 65.5 148 32.4
Lsat_1_v5_gn_0_32260 Lactuca sativa HOM05D003570 ORTHO05D004207 5.2e-09 65.1 159 31.4
Peaxi162Scf00128g00550 Petunia axillaris HOM05D003570 ORTHO05D004207 5.2e-09 65.1 148 33.1
QL03p056953 Quercus lobata HOM05D003570 ORTHO05D004207 1.2e-08 63.9 119 34.5
BraA09t41684Z Brassica rapa HOM05D003570 ORTHO05D004207 1.5e-08 63.5 165 32.7
AUR62024231 Chenopodium quinoa HOM05D003570 ORTHO05D004207 4.4e-08 62.0 168 28.6
MELO3C011924.2 Cucumis melo HOM05D003570 ORTHO05D004207 4.4e-08 62.0 156 33.3
C08p46780 Brassica napus HOM05D003570 ORTHO05D004207 5.8e-08 61.6 148 31.8
Oeu038645.2 Olea europaea HOM05D003570 ORTHO05D004207 5.8e-08 61.6 163 31.9
HanXRQChr08g0208421 Helianthus annuus HOM05D003570 ORTHO05D004207 9.9e-08 60.8 146 31.5
Sopen05g008710 Solanum pennellii HOM05D003570 ORTHO05D004207 9.9e-08 60.8 168 30.4
Sed0006332 Sechium edule HOM05D003570 ORTHO05D004207 1.3e-07 60.5 107 43.0
BcaC07g41664 Brassica carinata HOM05D003570 ORTHO05D004207 2.2e-07 59.7 150 31.3
Sp1g11650 Schrenkiella parvula HOM05D003570 ORTHO05D004207 2.2e-07 59.7 151 27.2
Atru.chr11.2174 Acer truncatum HOM05D003570 ORTHO05D004207 3.8e-07 58.9 92 43.5
BolC8t52217H Brassica oleracea HOM05D003570 ORTHO05D004207 4.9e-07 58.5 150 31.3
A09p63350 Brassica napus HOM05D003570 ORTHO05D004207 6.4e-07 58.2 167 29.9
Hma1.2p1_1533F.1_g289350 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 6.4e-07 58.2 130 33.8
Lalb_Chr08g0230861 Lupinus albus HOM05D003570 ORTHO05D004207 8.4e-07 57.8 82 43.9
Nitab4.5_0000229g0020 Nicotiana tabacum HOM05D003570 ORTHO05D004207 1.1e-06 57.4 148 31.8
Migut.K00625 Erythranthe guttata HOM05D003570 ORTHO05D004207 4.2e-06 55.5 172 33.1


User provided reference genes

Program Settings