Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g15300 Fragaria vesca HOM05D005535 ORTHO05D006753 7.2e-182 640.6 355 100.0
FAN18G1286 Fragaria x ananassa HOM05D005535 ORTHO05D006753 7.0e-177 624.0 357 98.3
FAN13G1299 Fragaria x ananassa HOM05D005535 ORTHO05D006753 7.3e-174 614.0 357 95.8
FAN04G1197 Fragaria x ananassa HOM05D005535 ORTHO05D006753 4.7e-165 584.7 358 92.7
FAN08G2745 Fragaria x ananassa HOM05D005535 ORTHO05D006753 6.8e-164 580.9 358 93.6
RcHm_v2.0_Chr7g0180761 Rosa chinensis HOM05D005535 ORTHO05D006753 2.3e-156 555.8 356 88.5
Prupe.5G188200 Prunus persica HOM05D005535 ORTHO05D006753 8.7e-111 404.4 348 68.4
MD06G1189400 Malus domestica HOM05D005535 ORTHO05D006753 1.3e-98 364.0 343 65.0
MD14G1196400 Malus domestica HOM05D005535 ORTHO05D006753 8.5e-98 361.3 351 64.4
Dinv38677 Davidia involucrata HOM05D005535 ORTHO05D006753 1.9e-89 333.6 358 60.6
QL10p015851 Quercus lobata HOM05D005535 ORTHO05D006753 2.7e-88 329.7 349 61.6
Cfa018977 Carpinus fangiana HOM05D005535 ORTHO05D006753 6.1e-88 328.6 370 60.3
Rhsim08G0158400 Rhododendron simsii HOM05D005535 ORTHO05D006753 1.4e-87 327.4 351 59.8
CANSAT80G1786 Cannabis sativa HOM05D005535 ORTHO05D006753 2.6e-86 323.2 363 56.7
Actinidia37646 Actinidia chinensis HOM05D005535 ORTHO05D006753 2.2e-85 320.1 359 59.9
Haze_07363 Corylus avellana HOM05D005535 ORTHO05D006753 2.2e-85 320.1 370 58.6
CSS0007804 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 1.1e-84 317.8 358 57.8
Actinidia04914 Actinidia chinensis HOM05D005535 ORTHO05D006753 4.1e-84 315.8 342 60.5
Ciclev10020848m.g Citrus clementina HOM05D005535 ORTHO05D006753 1.0e-82 311.2 353 57.2
Manes.06G095400 Manihot esculenta HOM05D005535 ORTHO05D006753 6.5e-82 308.5 354 57.6
GSVIVG01008044001 Vitis vinifera HOM05D005535 ORTHO05D006753 1.1e-81 307.8 363 58.4
Atru.chr9.2302 Acer truncatum HOM05D005535 ORTHO05D006753 1.6e-80 303.9 333 60.4
Lj9A460T58 Lonicera japonica HOM05D005535 ORTHO05D006753 1.8e-79 300.4 360 55.3
Duzib084G1387 Durio zibethinus HOM05D005535 ORTHO05D006753 2.6e-78 296.6 360 56.4
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 2.6e-78 296.6 360 56.1
Rhsim12G0158200 Rhododendron simsii HOM05D005535 ORTHO05D006753 9.7e-78 294.7 354 56.5
CiPaw.12G015700 Carya illinoinensis HOM05D005535 ORTHO05D006753 2.2e-77 293.5 357 56.3
vmacro16564 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 2.2e-77 293.5 352 56.0
Hma1.2p1_0104F.1_g050150 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 1.1e-76 291.2 384 51.6
Actinidia19054 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.4e-76 290.8 354 54.2
Eucgr.B00441 Eucalyptus grandis HOM05D005535 ORTHO05D006753 3.1e-76 289.7 362 53.0
CSS0007998 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 2.0e-75 287.0 345 54.8
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 2.7e-75 286.6 353 55.8
Dinv19929 Davidia involucrata HOM05D005535 ORTHO05D006753 5.9e-75 285.4 298 60.1
PGR083G2381 Punica granatum HOM05D005535 ORTHO05D006753 1.0e-74 284.6 360 53.1
TAR371G0260 Trochodendron aralioides HOM05D005535 ORTHO05D006753 1.5e-73 280.8 345 54.2
Actinidia34981 Actinidia chinensis HOM05D005535 ORTHO05D006753 5.5e-73 278.9 371 51.5
Glyma.04G173200 Glycine max HOM05D005535 ORTHO05D006753 6.1e-72 275.4 373 51.5
Glyma.06G191000 Glycine max HOM05D005535 ORTHO05D006753 1.0e-71 274.6 375 50.9
Duzib205G0302 Durio zibethinus HOM05D005535 ORTHO05D006753 5.2e-71 272.3 360 52.2
TAR629G1161 Trochodendron aralioides HOM05D005535 ORTHO05D006753 5.2e-71 272.3 347 51.9
ClCG06G016340 Citrullus lanatus HOM05D005535 ORTHO05D006753 9.8e-70 268.1 346 54.6
vmacro17524 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 1.1e-68 264.6 368 51.1
TWI60G0583 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 2.4e-68 263.5 363 51.0
Gorai.008G191600 Gossypium raimondii HOM05D005535 ORTHO05D006753 3.1e-68 263.1 373 49.9
Gohir.D12G178800 Gossypium hirsutum HOM05D005535 ORTHO05D006753 4.1e-68 262.7 365 50.7
Nitab4.5_0004785g0010 Nicotiana tabacum HOM05D005535 ORTHO05D006753 5.4e-68 262.3 361 51.5
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 2.0e-67 260.4 363 50.7
MSTRG.11394 Avicennia marina HOM05D005535 ORTHO05D006753 2.7e-67 260.0 354 50.0
Hund09363 Selenicereus undatus HOM05D005535 ORTHO05D006753 2.7e-67 260.0 345 50.4
AUR62021726 Chenopodium quinoa HOM05D005535 ORTHO05D006753 7.7e-67 258.5 366 50.5
Migut.I00138 Erythranthe guttata HOM05D005535 ORTHO05D006753 1.0e-66 258.1 362 51.4
Cc04_g15390 Coffea canephora HOM05D005535 ORTHO05D006753 1.7e-66 257.3 365 49.3
MELO3C017158.2 Cucumis melo HOM05D005535 ORTHO05D006753 2.9e-66 256.5 348 52.9
Nitab4.5_0000785g0140 Nicotiana tabacum HOM05D005535 ORTHO05D006753 5.0e-66 255.8 355 51.0
Sed0009946 Sechium edule HOM05D005535 ORTHO05D006753 5.0e-66 255.8 366 52.2
Oeu006178.3 Olea europaea HOM05D005535 ORTHO05D006753 7.2e-65 251.9 346 49.7
Aqoxy3G00718 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 1.6e-64 250.8 375 49.1
CsaV3_1G002190 Cucumis sativus L. HOM05D005535 ORTHO05D006753 1.6e-64 250.8 352 52.6
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 6.1e-64 248.8 385 47.8
Nitab4.5_0000269g0110 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.4e-63 247.7 343 47.5
Gohir.A12G175600 Gossypium hirsutum HOM05D005535 ORTHO05D006753 5.2e-63 245.7 365 49.0
COL.COLO4_14041 Corchorus olitorius HOM05D005535 ORTHO05D006753 1.2e-62 244.6 354 50.6
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 1.2e-62 244.6 398 47.5
arahy.Tifrunner.gnm1.ann1.WGP01G Arachis hypogaea HOM05D005535 ORTHO05D006753 2.6e-62 243.4 371 49.3
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 4.4e-62 242.7 363 48.2
Lalb_Chr13g0303381 Lupinus albus HOM05D005535 ORTHO05D006753 7.5e-62 241.9 359 48.2
Nitab4.5_0004931g0020 Nicotiana tabacum HOM05D005535 ORTHO05D006753 7.5e-62 241.9 361 46.3
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 7.5e-62 241.9 357 48.5
Solyc06g070970.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 9.8e-62 241.5 357 48.5
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 1.3e-61 241.1 357 48.2
Sopen06g027240 Solanum pennellii HOM05D005535 ORTHO05D006753 1.7e-61 240.7 357 48.2
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 3.7e-61 239.6 331 49.2
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 8.3e-61 238.4 371 49.6
Phvul.009G189600 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 1.1e-60 238.0 377 48.8
Lj5A114T27 Lonicera japonica HOM05D005535 ORTHO05D006753 1.4e-60 237.7 305 54.1
PSO832G1146 Papaver somniferum HOM05D005535 ORTHO05D006753 1.8e-60 237.3 358 48.0
HanXRQChr09g0271071 Helianthus annuus HOM05D005535 ORTHO05D006753 2.4e-60 236.9 350 47.4
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 7.0e-60 235.3 365 48.8
AUR62008371 Chenopodium quinoa HOM05D005535 ORTHO05D006753 9.2e-60 235.0 352 48.9
arahy.Tifrunner.gnm1.ann1.G5WMYY Arachis hypogaea HOM05D005535 ORTHO05D006753 1.2e-59 234.6 370 48.1
Cpa.g.sc17.224 Carica papaya HOM05D005535 ORTHO05D006753 2.0e-59 233.8 336 50.9
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 2.0e-59 233.8 354 49.4
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 1.0e-58 231.5 363 49.0
PGSC0003DMG401018143 Solanum tuberosum HOM05D005535 ORTHO05D006753 1.3e-58 231.1 351 47.0
Sc10g0009960 Simmondsia chinensis HOM05D005535 ORTHO05D006753 3.3e-57 226.5 356 47.8
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 4.3e-57 226.1 355 46.2
PSO591G0334 Papaver somniferum HOM05D005535 ORTHO05D006753 7.3e-57 225.3 354 47.2
ECA232G4425 Erigeron canadensis HOM05D005535 ORTHO05D006753 1.6e-56 224.2 367 46.3
Oeu022201.1 Olea europaea HOM05D005535 ORTHO05D006753 1.6e-56 224.2 333 47.7
Peaxi162Scf00013g00129 Petunia axillaris HOM05D005535 ORTHO05D006753 2.8e-56 223.4 324 45.4
Sed0000211 Sechium edule HOM05D005535 ORTHO05D006753 3.6e-56 223.0 367 48.8
SGA_v2.0_scaffold56G20044 Striga asiatica HOM05D005535 ORTHO05D006753 4.7e-56 222.6 371 45.8
VMungo1215G1657 Vigna mungo HOM05D005535 ORTHO05D006753 4.7e-56 222.6 364 45.9
MBI01_g12912_MAGBIO Magnolia biondii HOM05D005535 ORTHO05D006753 1.8e-55 220.7 236 57.6
Ca_21840_v3 Cicer arietinum L. HOM05D005535 ORTHO05D006753 2.3e-55 220.3 371 47.2
Ah.02g113290 Amaranthus hybridus HOM05D005535 ORTHO05D006753 4.0e-55 219.5 365 46.8
Psat4g052400 Pisum sativum HOM05D005535 ORTHO05D006753 5.2e-55 219.2 336 48.5
Potri.015G063700 Populus trichocarpa HOM05D005535 ORTHO05D006753 8.9e-55 218.4 356 46.9
TPR.G27376 Trifolium pratense HOM05D005535 ORTHO05D006753 1.2e-54 218.0 396 44.9
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 1.7e-53 214.2 368 45.7
Medtr4g108100 Medicago truncatula HOM05D005535 ORTHO05D006753 2.9e-53 213.4 400 45.0
VMungo1309G2126 Vigna mungo HOM05D005535 ORTHO05D006753 1.1e-52 211.5 283 51.6
Sopen03g032160 Solanum pennellii HOM05D005535 ORTHO05D006753 1.9e-52 210.7 349 44.4
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 3.2e-52 209.9 350 43.1
ATR1120G167 Amborella trichopoda HOM05D005535 ORTHO05D006753 3.5e-51 206.5 358 43.0
HanXRQChr05g0158021 Helianthus annuus HOM05D005535 ORTHO05D006753 7.3e-49 198.7 361 44.0
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 9.5e-49 198.4 246 50.8
SGA_v2.0_scaffold162G37926 Striga asiatica HOM05D005535 ORTHO05D006753 1.6e-48 197.6 316 46.8
Aqoxy3G03311 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 1.8e-47 194.1 328 46.3
PSO017G0680 Papaver somniferum HOM05D005535 ORTHO05D006753 5.8e-46 189.1 374 42.8
unitig_26.g9639 Utricularia gibba HOM05D005535 ORTHO05D006753 1.7e-45 187.6 344 41.9
Lsat_1_v5_gn_5_19040 Lactuca sativa HOM05D005535 ORTHO05D006753 1.0e-42 178.3 340 43.8
PGSC0003DMG400033073 Solanum tuberosum HOM05D005535 ORTHO05D006753 1.3e-42 177.9 359 40.4
THA.LOC104821430 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 5.1e-42 176.0 337 42.4
Zm00001eb386190 Zea mays HOM05D005535 ORTHO05D006753 8.6e-42 175.3 343 39.9
Zm00001eb277070 Zea mays HOM05D005535 ORTHO05D006753 1.6e-40 171.0 355 40.0
Thhalv10004313m.g Eutrema salsugineum HOM05D005535 ORTHO05D006753 6.2e-40 169.1 282 43.3
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 1.8e-39 167.5 346 38.4
BcaB02g09657 Brassica carinata HOM05D005535 ORTHO05D006753 2.3e-39 167.2 369 38.8
Os06g0589500 Oryza sativa ssp. japonica HOM05D005535 ORTHO05D006753 2.3e-39 167.2 350 40.9
BraA06t25881Z Brassica rapa HOM05D005535 ORTHO05D006753 2.2e-37 160.6 370 38.1
A06p29250 Brassica napus HOM05D005535 ORTHO05D006753 8.3e-37 158.7 326 40.2
BcaC01g02485 Brassica carinata HOM05D005535 ORTHO05D006753 1.4e-36 157.9 366 39.1
C03p64280 Brassica napus HOM05D005535 ORTHO05D006753 1.4e-36 157.9 366 39.1
BolC3t18683H Brassica oleracea HOM05D005535 ORTHO05D006753 1.4e-36 157.9 366 39.1
Sp2g25720 Schrenkiella parvula HOM05D005535 ORTHO05D006753 2.7e-35 153.7 324 39.8
AT5G62550 Arabidopsis thaliana HOM05D005535 ORTHO05D006753 6.0e-35 152.5 248 45.6
AL8G39440 Arabidopsis lyrata HOM05D005535 ORTHO05D006753 9.6e-33 145.2 345 37.7
Aa31LG11G1090 Aethionema arabicum HOM05D005535 ORTHO05D006753 5.8e-30 136.0 366 36.3
Carub.0008s2322 Capsella rubella HOM05D005535 ORTHO05D006753 6.4e-29 132.5 360 36.9
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 1.4e-23 114.8 435 30.3
TWI34G0031 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 6.9e-23 112.5 182 45.6
GSVIVG01025161001 Vitis vinifera HOM05D008415 ORTHO05D010601 2.7e-11 73.9 184 36.4
QL01p023166 Quercus lobata HOM05D008415 ORTHO05D010601 4.3e-09 66.6 157 35.7
Hma1.2p1_2585F.1_g324920 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 5.6e-09 66.2 116 38.8
Hma1.2p1_1931F.1_g307990 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 9.6e-09 65.5 116 38.8
CAN.G631.8 Capsicum annuum HOM05D008415 ORTHO05D010601 1.3e-08 65.1 190 30.0
Oeu059099.1 Olea europaea HOM05D008415 ORTHO05D010601 1.3e-08 65.1 138 39.1
Lj3g0013437 Lotus japonicus HOM05D008415 ORTHO05D010601 1.6e-08 64.7 184 33.2
Actinidia03741 Actinidia chinensis HOM05D008415 ORTHO05D010601 2.1e-08 64.3 179 31.8
MD01G1041800 Malus domestica HOM05D005535 ORTHO05D006753 3.7e-08 63.5 51 68.6
SGA_v2.0_scaffold61G21159 Striga asiatica HOM05D008415 ORTHO05D010601 4.8e-08 63.2 212 30.7
arahy.Tifrunner.gnm1.ann1.TY33PY Arachis hypogaea HOM05D008415 ORTHO05D010601 1.1e-07 62.0 194 29.9
Glyma.12G070700 Glycine max HOM05D008415 ORTHO05D010601 1.4e-07 61.6 110 40.0
Migut.D02196 Erythranthe guttata HOM05D008415 ORTHO05D010601 1.8e-07 61.2 114 37.7
Rhsim01G0218700 Rhododendron simsii HOM05D008415 ORTHO05D010601 2.4e-07 60.8 77 44.2
CsaV3_6G021730 Cucumis sativus L. HOM05D008415 ORTHO05D010601 3.1e-07 60.5 160 30.0
Lalb_Chr19g0137361 Lupinus albus HOM05D008415 ORTHO05D010601 3.1e-07 60.5 114 35.1
Phvul.011G073700 Phaseolus vulgaris HOM05D008415 ORTHO05D010601 3.1e-07 60.5 61 47.5
Peaxi162Scf00351g00214 Petunia axillaris HOM05D008415 ORTHO05D010601 4.0e-07 60.1 176 31.8
Psat7g223880 Pisum sativum HOM05D008415 ORTHO05D010601 5.3e-07 59.7 112 34.8
Sed0001336 Sechium edule HOM05D008415 ORTHO05D010601 9.0e-07 58.9 110 35.5
MSTRG.18650 Avicennia marina HOM05D008415 ORTHO05D010601 1.2e-06 58.5 142 32.4
TAR633G1891 Trochodendron aralioides HOM05D008415 ORTHO05D010601 1.2e-06 58.5 161 32.9
arahy.Tifrunner.gnm1.ann1.C7LIDW Arachis hypogaea HOM05D008415 ORTHO05D010601 1.5e-06 58.2 125 34.4
SalBow3G0300 Salvia bowleyana HOM05D008415 ORTHO05D010601 1.5e-06 58.2 194 33.0
Eucgr.J00943 Eucalyptus grandis HOM05D008415 ORTHO05D010601 2.6e-06 57.4 90 43.3
TAR375G0593 Trochodendron aralioides HOM05D005535 ORTHO05D006753 2.6e-06 57.4 67 52.2
Medtr4g060050 Medicago truncatula HOM05D008415 ORTHO05D010601 3.4e-06 57.0 167 29.9
Nitab4.5_0000650g0050 Nicotiana tabacum HOM05D008415 ORTHO05D010601 4.5e-06 56.6 189 31.2
PGSC0003DMG400008064 Solanum tuberosum HOM05D008415 ORTHO05D010601 4.5e-06 56.6 184 31.0
vmacro14451 Vaccinium macrocarpon HOM05D008415 ORTHO05D010601 4.5e-06 56.6 179 30.2
VMungo1127G1728 Vigna mungo HOM05D008415 ORTHO05D010601 4.5e-06 56.6 113 33.6
Ca_19250_v3 Cicer arietinum L. HOM05D008415 ORTHO05D010601 5.8e-06 56.2 86 40.7
MELO3C025762.2 Cucumis melo HOM05D008415 ORTHO05D010601 5.8e-06 56.2 160 29.4
ClCG02G021040 Citrullus lanatus HOM05D008415 ORTHO05D010601 7.6e-06 55.8 193 28.0
CANSAT54G1687 Cannabis sativa HOM05D008415 ORTHO05D010601 1.0e-05 55.5 87 37.9
Dinv32770 Davidia involucrata HOM05D008415 ORTHO05D010601 1.0e-05 55.5 110 35.5


User provided reference genes

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