Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g14790 Fragaria vesca HOM05D004915 ORTHO05D006048 4.5e-152 541.2 267 100.0
FAN18G3490 Fragaria x ananassa HOM05D004915 ORTHO05D006048 2.1e-149 532.3 266 98.9
FAN08G1694 Fragaria x ananassa HOM05D004915 ORTHO05D006048 8.8e-148 526.9 266 97.7
FAN04G1144 Fragaria x ananassa HOM05D004915 ORTHO05D006048 2.0e-147 525.8 266 98.1
FAN13G2234 Fragaria x ananassa HOM05D004915 ORTHO05D006048 2.8e-146 521.9 266 97.4
RcHm_v2.0_Chr7g0181591 Rosa chinensis HOM05D004915 ORTHO05D006048 5.0e-127 458.0 265 85.3
FAN10G0297 Fragaria x ananassa HOM05D004915 ORTHO05D006048 4.4e-123 444.9 265 83.8
FvH4_7g07490 Fragaria vesca HOM05D004915 ORTHO05D006048 1.3e-122 443.4 265 83.8
FAN03G1016 Fragaria x ananassa HOM05D004915 ORTHO05D006048 4.9e-122 441.4 265 83.4
Prupe.5G195000 Prunus persica HOM05D004915 ORTHO05D006048 7.5e-115 417.5 267 76.8
MD06G1194800 Malus domestica HOM05D004915 ORTHO05D006048 1.1e-110 403.7 255 77.3
MD14G1201800 Malus domestica HOM05D004915 ORTHO05D006048 3.1e-108 395.6 254 75.2
QL10p017218 Quercus lobata HOM05D004915 ORTHO05D006048 9.2e-105 384.0 267 72.3
CiPaw.11G045800 Carya illinoinensis HOM05D004915 ORTHO05D006048 1.6e-104 383.3 268 70.9
GSVIVG01007990001 Vitis vinifera HOM05D004915 ORTHO05D006048 1.0e-103 380.6 267 70.8
Duzib205G1074 Durio zibethinus HOM05D004915 ORTHO05D006048 1.5e-102 376.7 259 71.0
Cfa018930 Carpinus fangiana HOM05D004915 ORTHO05D006048 2.5e-102 375.9 268 70.5
Thecc.03G090400 Theobroma cacao HOM05D004915 ORTHO05D006048 4.3e-102 375.2 259 70.7
Eucgr.B00520 Eucalyptus grandis HOM05D004915 ORTHO05D006048 1.2e-99 367.1 265 68.7
Peaxi162Scf00241g00416 Petunia axillaris HOM05D004915 ORTHO05D006048 1.2e-99 367.1 259 69.5
Migut.L00264 Erythranthe guttata HOM05D004915 ORTHO05D006048 2.0e-99 366.3 266 67.3
Lj5C110T19 Lonicera japonica HOM05D004915 ORTHO05D006048 3.4e-99 365.5 255 69.0
TAR622G0868 Trochodendron aralioides HOM05D004915 ORTHO05D006048 3.4e-99 365.5 246 69.5
Oeu058311.1 Olea europaea HOM05D004915 ORTHO05D006048 4.4e-99 365.2 261 67.4
MELO3C001989.2 Cucumis melo HOM05D004915 ORTHO05D006048 9.8e-99 364.0 260 68.8
CsaV3_1G005570 Cucumis sativus L. HOM05D004915 ORTHO05D006048 2.2e-98 362.8 262 68.7
Oeu037787.1 Olea europaea HOM05D004915 ORTHO05D006048 2.9e-98 362.5 276 65.6
Haze_07314 Corylus avellana HOM05D004915 ORTHO05D006048 4.9e-98 361.7 303 62.7
Rhsim08G0070400 Rhododendron simsii HOM05D004915 ORTHO05D006048 8.3e-98 360.9 254 69.3
Dinv37673 Davidia involucrata HOM05D004915 ORTHO05D006048 1.1e-97 360.5 257 69.3
ECA246G2050 Erigeron canadensis HOM05D004915 ORTHO05D006048 1.1e-97 360.5 250 69.6
Cc04_g16470 Coffea canephora HOM05D004915 ORTHO05D006048 1.4e-97 360.1 256 69.5
ClCG04G012190 Citrullus lanatus HOM05D004915 ORTHO05D006048 4.1e-97 358.6 249 69.5
AUR62021031 Chenopodium quinoa HOM05D004915 ORTHO05D006048 5.4e-97 358.2 267 66.7
CANSAT56G1541 Cannabis sativa HOM05D004915 ORTHO05D006048 7.1e-97 357.8 248 68.5
Hma1.2p1_0060F.1_g033670 Hydrangea macrophylla HOM05D004915 ORTHO05D006048 7.1e-97 357.8 252 69.8
COL.COLO4_22946 Corchorus olitorius HOM05D004915 ORTHO05D006048 1.2e-96 357.1 272 66.2
PSO478G3309 Papaver somniferum HOM05D004915 ORTHO05D006048 2.1e-96 356.3 253 67.2
TWI34G1631 Tripterygium wilfordii HOM05D004915 ORTHO05D006048 2.7e-96 355.9 246 72.4
CAN.G199.5 Capsicum annuum HOM05D004915 ORTHO05D006048 6.0e-96 354.8 254 66.9
Aqoxy3G03429 Aquilegia oxysepala HOM05D004915 ORTHO05D006048 1.0e-95 354.0 253 66.4
Ciclev10012474m.g Citrus clementina HOM05D004915 ORTHO05D006048 2.3e-95 352.8 248 69.0
Lj1g0024391 Lotus japonicus HOM05D004915 ORTHO05D006048 3.9e-95 352.1 253 65.6
Actinidia38781 Actinidia chinensis HOM05D004915 ORTHO05D006048 5.1e-95 351.7 255 67.5
MBI05_g33757_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 6.6e-95 351.3 258 67.1
Solyc06g065310.3 Solanum lycopersicum HOM05D004915 ORTHO05D006048 8.6e-95 350.9 258 66.7
MSTRG.15680 Avicennia marina HOM05D004915 ORTHO05D006048 2.5e-94 349.4 259 64.5
Nitab4.5_0000121g0120 Nicotiana tabacum HOM05D004915 ORTHO05D006048 2.5e-94 349.4 257 65.4
Sopen06g023800 Solanum pennellii HOM05D004915 ORTHO05D006048 2.5e-94 349.4 257 66.5
TAR374G0666 Trochodendron aralioides HOM05D004915 ORTHO05D006048 4.3e-94 348.6 238 70.2
SGA_v2.0_scaffold17G08101 Striga asiatica HOM05D004915 ORTHO05D006048 5.6e-94 348.2 255 65.1
Atru.chr8.192 Acer truncatum HOM05D004915 ORTHO05D006048 7.3e-94 347.8 249 67.9
CSS0019190 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 1.6e-93 346.7 248 68.5
Potri.017G085100 Populus trichocarpa HOM05D004915 ORTHO05D006048 2.8e-93 345.9 262 63.4
Sp7g02320 Schrenkiella parvula HOM05D004915 ORTHO05D006048 2.8e-93 345.9 260 61.9
Ca_02901_v3 Cicer arietinum L. HOM05D004915 ORTHO05D006048 8.1e-93 344.4 250 65.2
Lj4A111T68 Lonicera japonica HOM05D004915 ORTHO05D006048 8.1e-93 344.4 274 64.6
HanXRQChr09g0247201 Helianthus annuus HOM05D004915 ORTHO05D006048 1.1e-92 344.0 247 67.6
AUR62018412 Chenopodium quinoa HOM05D004915 ORTHO05D006048 1.4e-92 343.6 254 65.4
Thhalv10027886m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 1.4e-92 343.6 260 61.9
Manes.01G092400 Manihot esculenta HOM05D004915 ORTHO05D006048 1.4e-92 343.6 246 66.7
Sabra17G0075000 Salix brachista HOM05D004915 ORTHO05D006048 1.4e-92 343.6 262 63.4
Actinidia38763 Actinidia chinensis HOM05D004915 ORTHO05D006048 1.8e-92 343.2 265 64.9
HanXRQChr08g0236601 Helianthus annuus HOM05D004915 ORTHO05D006048 1.8e-92 343.2 245 68.6
MBI05_g35466_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 5.2e-92 341.7 272 63.6
Medtr1g111380 Medicago truncatula HOM05D004915 ORTHO05D006048 5.2e-92 341.7 251 62.2
PGSC0003DMG400026111 Solanum tuberosum HOM05D004915 ORTHO05D006048 5.2e-92 341.7 258 64.7
Lsat_1_v5_gn_9_27040 Lactuca sativa HOM05D004915 ORTHO05D006048 6.8e-92 341.3 249 66.3
Hund02640 Selenicereus undatus HOM05D004915 ORTHO05D006048 2.6e-91 339.3 267 62.5
arahy.Tifrunner.gnm1.ann1.BYQL86 Arachis hypogaea HOM05D004915 ORTHO05D006048 3.4e-91 339.0 243 66.3
TPR.G33578 Trifolium pratense HOM05D004915 ORTHO05D006048 3.4e-91 339.0 246 63.8
Peaxi162Scf00106g00016 Petunia axillaris HOM05D004915 ORTHO05D006048 4.4e-91 338.6 278 60.4
Medtr7g011040 Medicago truncatula HOM05D004915 ORTHO05D006048 9.9e-91 337.4 246 62.2
Phvul.008G037200 Phaseolus vulgaris HOM05D004915 ORTHO05D006048 9.9e-91 337.4 250 62.0
VMungo1383G0755 Vigna mungo HOM05D004915 ORTHO05D006048 1.7e-90 336.7 247 61.9
AL5G18870 Arabidopsis lyrata HOM05D004915 ORTHO05D006048 2.2e-90 336.3 248 63.7
BolC4t26193H Brassica oleracea HOM05D004915 ORTHO05D006048 2.2e-90 336.3 260 60.4
C04p46080 Brassica napus HOM05D004915 ORTHO05D006048 3.7e-90 335.5 260 60.0
TPR.G39201 Trifolium pratense HOM05D004915 ORTHO05D006048 3.7e-90 335.5 246 63.0
CARHR262560 Cardamine hirsuta HOM05D004915 ORTHO05D006048 2.4e-89 332.8 257 61.5
Cpa.g.sc179.53 Carica papaya HOM05D004915 ORTHO05D006048 3.2e-89 332.4 249 63.9
Nn4g23203 Nelumbo nucifera HOM05D004915 ORTHO05D006048 5.4e-89 331.6 238 66.8
Psat3g200280 Pisum sativum HOM05D004915 ORTHO05D006048 5.4e-89 331.6 245 63.7
A04p12400 Brassica napus HOM05D004915 ORTHO05D006048 7.1e-89 331.3 260 60.4
Aa31LG9G16420 Aethionema arabicum HOM05D004915 ORTHO05D006048 1.6e-88 330.1 259 58.7
BolC7t44312H Brassica oleracea HOM05D004915 ORTHO05D006048 1.6e-88 330.1 251 62.9
BraA04t16903Z Brassica rapa HOM05D004915 ORTHO05D006048 1.6e-88 330.1 260 60.0
Carub.0007s3626 Capsella rubella HOM05D004915 ORTHO05D006048 3.5e-88 328.9 260 59.6
Glyma.09G236600 Glycine max HOM05D004915 ORTHO05D006048 7.8e-88 327.8 248 62.5
BraA06t26934Z Brassica rapa HOM05D004915 ORTHO05D006048 1.0e-87 327.4 248 62.1
Lalb_Chr23g0265041 Lupinus albus HOM05D004915 ORTHO05D006048 1.7e-87 326.6 245 63.3
BcaC06g33662 Brassica carinata HOM05D004915 ORTHO05D006048 3.0e-87 325.9 251 62.5
C07p37910 Brassica napus HOM05D004915 ORTHO05D006048 3.0e-87 325.9 251 62.5
Sp2g17640 Schrenkiella parvula HOM05D004915 ORTHO05D006048 3.0e-87 325.9 248 61.3
Aa31LG2G4180 Aethionema arabicum HOM05D004915 ORTHO05D006048 6.6e-87 324.7 248 60.5
Carub.0005s0760 Capsella rubella HOM05D004915 ORTHO05D006048 8.6e-87 324.3 248 61.3
CARHR152100 Cardamine hirsuta HOM05D004915 ORTHO05D006048 1.1e-86 323.9 248 60.1
Thhalv10005292m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 1.1e-86 323.9 248 61.3
HPP92_002574 Vanilla planifolia HOM05D004915 ORTHO05D006048 1.1e-86 323.9 242 64.0
HPP92_002576 Vanilla planifolia HOM05D004915 ORTHO05D006048 1.1e-86 323.9 242 64.0
A06p40200 Brassica napus HOM05D004915 ORTHO05D006048 2.5e-86 322.8 248 60.9
EL10Ac3g07299 Beta vulgaris HOM05D004915 ORTHO05D006048 4.3e-86 322.0 314 54.1
Zm00001eb211140 Zea mays HOM05D004915 ORTHO05D006048 9.6e-86 320.9 252 60.3
Os08g0435800 Oryza sativa ssp. japonica HOM05D004915 ORTHO05D006048 2.1e-85 319.7 254 59.1
DCAR_015957 Daucus carota HOM05D004915 ORTHO05D006048 1.1e-84 317.4 246 65.4
CSS0012692 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 3.1e-84 315.8 248 64.5
PGR083G1377 Punica granatum HOM05D004915 ORTHO05D006048 6.8e-84 314.7 219 68.5
THA.LOC104825807 Tarenaya hassleriana HOM05D004915 ORTHO05D006048 7.3e-78 294.7 284 52.5
Gorai.001G074400 Gossypium raimondii HOM05D004915 ORTHO05D006048 2.1e-77 293.1 204 67.2
Gohir.D07G070500 Gossypium hirsutum HOM05D004915 ORTHO05D006048 1.1e-76 290.8 204 66.2
Sed0011950 Sechium edule HOM05D004915 ORTHO05D006048 2.4e-76 289.7 182 74.7
PGR031G1409 Punica granatum HOM05D004915 ORTHO05D006048 6.9e-76 288.1 212 66.0
SEGI_18610 Sequoiadendron giganteum HOM05D004915 ORTHO05D006048 3.4e-75 285.8 216 61.6
Sc04g0002730 Simmondsia chinensis HOM05D004915 ORTHO05D006048 2.4e-73 279.6 169 75.7
AT3G29010 Arabidopsis thaliana HOM05D004915 ORTHO05D006048 9.3e-73 277.7 183 69.4
BcaB06g27359 Brassica carinata HOM05D004915 ORTHO05D006048 1.6e-72 276.9 253 55.3
Mapoly0106s0015 Marchantia polymorpha HOM05D004915 ORTHO05D006048 1.6e-72 276.9 248 54.8
Pp3c2_33530 Physcomitrium patens HOM05D004915 ORTHO05D006048 1.0e-71 274.2 250 53.6
AagrBONN_evm.TU.Sc2ySwM_344.3958 Anthoceros agrestis HOM05D004915 ORTHO05D006048 8.1e-69 264.6 229 55.0
CSS0012742 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 7.6e-67 258.1 258 54.3
Actinidia26226 Actinidia chinensis HOM05D004915 ORTHO05D006048 4.9e-66 255.4 241 56.4
AagrBONN_evm.TU.Sc2ySwM_362.689 Anthoceros agrestis HOM05D004915 ORTHO05D006048 1.9e-65 253.4 181 63.5
SMO119G0486 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 1.5e-62 243.8 214 51.4
AagrBONN_evm.TU.Sc2ySwM_362.690 Anthoceros agrestis HOM05D004915 ORTHO05D006048 4.3e-62 242.3 170 64.1
ATR0626G227 Amborella trichopoda HOM05D004915 ORTHO05D006048 1.2e-56 224.2 193 56.0
MCO14G534 Micromonas commoda HOM05D004915 ORTHO05D006048 8.7e-55 218.0 209 51.7
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 1.1e-54 217.6 242 49.6
Cre01.g053750 Chlamydomonas reinhardtii HOM05D004915 ORTHO05D006048 3.1e-52 209.5 192 53.1
QL06p014871 Quercus lobata HOM05D004915 ORTHO05D006048 4.1e-52 209.1 129 73.6
unitig_60.g25520 Utricularia gibba HOM05D004915 ORTHO05D006048 9.3e-49 198.0 266 43.6
Gohir.A07G066000 Gossypium hirsutum HOM05D004915 ORTHO05D006048 6.1e-48 195.3 144 63.9
HanXRQChr14g0437411 Helianthus annuus HOM05D004915 ORTHO05D006048 2.2e-45 186.8 130 69.2
HanXRQChr13g0408591 Helianthus annuus HOM05D004915 ORTHO05D006048 6.5e-42 175.3 126 66.7
Nitab4.5_0004528g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 6.5e-42 175.3 296 39.2
vmacro05688 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 2.1e-40 170.2 138 60.9
SMO164G0178 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 3.6e-40 169.5 204 43.1
CBR_g58409 Chara braunii HOM05D004915 ORTHO05D006048 6.1e-40 168.7 128 55.5
Nitab4.5_0005170g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 1.8e-39 167.2 112 69.6
FAN06G0706 Fragaria x ananassa HOM05D004915 ORTHO05D006048 5.1e-39 165.6 107 79.4
vmacro18186 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 8.8e-39 164.9 212 47.2
DCAR_026059 Daucus carota HOM05D004915 ORTHO05D006048 1.3e-37 161.0 116 64.7
PRCOL_00000090 Prasinoderma coloniale HOM05D004915 ORTHO05D006048 1.2e-35 154.5 237 36.7
Ah.04g150570 Amaranthus hybridus HOM05D004915 ORTHO05D006048 8.0e-24 115.2 79 67.1
QL06p014899 Quercus lobata HOM05D004915 ORTHO05D006048 7.0e-20 102.1 65 66.2
Nitab4.5_0005170g0060 Nicotiana tabacum HOM05D004915 ORTHO05D006048 2.0e-19 100.5 105 45.7
ATR0642G001 Amborella trichopoda HOM05D004915 ORTHO05D006048 1.2e-16 91.3 54 79.6
DCAR_015961 Daucus carota HOM05D004915 ORTHO05D006048 7.7e-11 72.0 70 50.0
Pp3s30_306 Physcomitrium patens HOM05D004915 ORTHO05D043763 2.6e-06 57.0 154 27.9
Pp3c1_38790 Physcomitrium patens HOM05D004915 ORTHO05D315101 4.4e-06 56.2 40 65.0


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