Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 0.0e+00 1375.5 704 100.0
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 0.0e+00 1336.2 708 97.6
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 0.0e+00 1247.6 749 86.5
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 0.0e+00 1237.6 680 90.1
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 0.0e+00 1135.9 705 83.7
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 0.0e+00 1085.9 680 77.8
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 2.4e-311 1071.6 686 77.3
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 7.4e-263 910.6 687 64.3
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 3.1e-261 905.2 687 63.3
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 1.2e-255 886.7 690 63.2
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 5.7e-255 884.4 690 61.6
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 7.5e-255 884.0 685 62.3
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 3.7e-246 855.1 684 60.1
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 1.7e-243 846.3 686 60.9
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 7.2e-242 840.9 680 59.4
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 1.4e-240 836.6 653 62.3
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 2.6e-239 832.4 700 58.9
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 7.5e-239 830.9 679 59.5
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 9.8e-239 830.5 682 60.0
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 8.3e-238 827.4 679 59.8
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 1.4e-237 826.6 684 58.8
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 5.4e-237 824.7 679 60.2
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 7.8e-236 820.8 695 59.3
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 1.0e-235 820.5 697 58.8
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 1.0e-235 820.5 679 59.1
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 5.0e-235 818.1 687 58.8
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 8.6e-235 817.4 694 59.2
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 9.5e-234 813.9 679 59.4
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 1.2e-233 813.5 685 58.1
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 2.8e-233 812.4 694 59.2
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 9.8e-231 803.9 688 57.6
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 2.2e-230 802.7 694 57.9
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 2.7e-228 795.8 699 56.5
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 3.0e-227 792.3 834 50.8
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 5.0e-227 791.6 691 56.0
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 9.5e-226 787.3 623 60.8
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 3.0e-219 765.8 696 55.5
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 6.6e-219 764.6 692 55.5
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 1.5e-218 763.5 689 56.7
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 2.5e-218 762.7 686 56.3
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 1.8e-216 756.5 699 55.1
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 1.2e-215 753.8 693 53.7
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 1.5e-215 753.4 680 54.1
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 1.5e-215 753.4 699 54.4
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 2.0e-215 753.1 688 53.6
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 1.7e-214 750.0 697 52.8
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 2.9e-214 749.2 687 53.6
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 2.9e-214 749.2 683 53.3
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 4.6e-212 741.9 691 52.5
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.3e-211 740.3 685 56.1
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 1.7e-211 740.0 696 52.4
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 1.7e-211 740.0 701 52.2
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 3.9e-211 738.8 688 52.9
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 6.6e-211 738.0 696 52.7
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 8.6e-211 737.6 692 52.3
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 8.1e-209 731.1 689 53.0
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 1.4e-208 730.3 687 52.7
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 1.2e-207 727.2 710 51.5
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 3.4e-207 725.7 715 52.4
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 6.4e-206 721.5 689 55.4
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 2.4e-205 719.5 722 50.3
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 2.1e-204 716.5 697 51.8
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 2.7e-204 716.1 702 53.3
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 6.0e-204 714.9 682 52.3
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 3.3e-202 709.1 685 51.7
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 7.3e-202 708.0 752 48.8
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 7.3e-202 708.0 701 52.4
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 7.3e-202 708.0 702 52.4
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 9.6e-202 707.6 698 53.0
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 6.4e-198 694.9 648 52.6
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 1.4e-197 693.7 690 50.7
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 3.0e-195 686.0 726 50.6
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 6.6e-195 684.9 695 50.8
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 3.6e-193 679.1 684 50.0
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 1.3e-185 654.1 703 47.9
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 6.2e-185 651.7 693 48.5
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 1.1e-184 651.0 649 53.0
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 2.3e-179 633.3 598 53.2
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 5.1e-179 632.1 741 45.5
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 8.7e-179 631.3 640 52.2
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 6.2e-177 625.2 684 47.8
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 2.5e-170 603.2 681 45.4
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 4.1e-168 595.9 702 45.7
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 6.1e-164 582.0 731 43.6
Lj5A108G55 Lonicera japonica HOM05D004701 ORTHO05D005220 6.3e-153 545.4 581 49.6
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 1.2e-148 531.2 684 43.0
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 1.4e-147 527.7 427 60.2
CDE02G4120 Ceratophyllum demersum HOM05D004701 ORTHO05D005220 6.3e-145 518.8 450 56.2
ClCG06G016050 Citrullus lanatus HOM05D004701 ORTHO05D005220 1.1e-141 508.1 446 57.2
Lj2g0020469 Lotus japonicus HOM05D004701 ORTHO05D005220 7.5e-138 495.4 642 42.5
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 7.5e-138 495.4 679 40.9
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 6.3e-137 492.3 574 45.8
Actinidia04876 Actinidia chinensis HOM05D004701 ORTHO05D005220 7.7e-135 485.3 373 61.1
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 1.7e-134 484.2 476 52.5
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 9.8e-122 441.8 316 70.6
Mapoly0021s0150 Marchantia polymorpha HOM05D004701 ORTHO05D005220 2.2e-121 440.7 602 41.0
MBI02_g20482_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 9.2e-120 435.3 328 65.2
Pp3c17_15290 Physcomitrium patens HOM05D004701 ORTHO05D005220 2.1e-108 397.5 583 38.8
AagrBONN_evm.TU.Sc2ySwM_344.3797 Anthoceros agrestis HOM05D004701 ORTHO05D005220 3.7e-105 386.7 545 39.1
CARHR019320 Cardamine hirsuta HOM05D004701 ORTHO05D005220 1.2e-95 355.1 260 62.7
SMO117G0311 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.3e-85 320.1 349 47.3
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 9.0e-75 285.8 267 55.1
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 1.8e-70 271.6 274 53.6
MD14G1203400 Malus domestica HOM05D004701 ORTHO05D005220 2.3e-70 271.2 197 68.5
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 3.2e-64 250.8 292 46.6
Oeu052445.1 Olea europaea HOM05D004701 ORTHO05D005220 1.3e-57 228.8 263 44.5
Sopen03g034830 Solanum pennellii HOM05D004701 ORTHO05D005220 2.9e-57 227.6 212 50.9
Ca_14652_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 5.5e-56 223.4 248 43.5
SMO286G0020 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.1e-55 221.5 328 39.0
CSS0033275 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.0e-54 219.2 205 56.6
HPP92_019730 Vanilla planifolia HOM05D004701 ORTHO05D005220 1.1e-53 215.7 503 31.2
Ca_14653_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 1.9e-48 198.4 232 45.3
SMO240G0047 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.9e-38 164.1 288 35.8
SMO274G0026 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 5.7e-37 160.2 306 33.7
SMO274G0023 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 7.4e-37 159.8 335 32.5
SEGI_05265 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 9.7e-37 159.5 168 47.6
Hma1.2p1_0060F.1_g033570 Hydrangea macrophylla HOM05D004701 ORTHO05D005220 1.3e-36 159.1 156 55.1
Cc00_g08360 Coffea canephora HOM05D004701 ORTHO05D005220 3.7e-36 157.5 155 48.4
SMO202G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.8e-33 147.5 188 42.6
SMO364G0054 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.2e-32 144.4 191 41.4
Cpa.g.c36787.2 Carica papaya HOM05D004701 ORTHO05D005220 1.3e-28 132.5 86 65.1
SEGI_06018 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 1.3e-28 132.5 144 44.4
SMO122G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.8e-28 131.3 260 35.8
PRCOL_00003726 Prasinoderma coloniale HOM05D004701 ORTHO05D005220 5.3e-27 127.1 439 25.3
SMO183G0003 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 5.3e-27 127.1 332 31.9
Lj5A108T60 Lonicera japonica HOM05D004701 ORTHO05D005220 3.5e-26 124.4 129 51.2
Cre02.g118450 Chlamydomonas reinhardtii HOM05D004701 ORTHO05D005220 2.2e-25 121.7 471 24.6
SMO274G0004 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.8e-25 120.9 271 32.8
SMO274G0001 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 9.4e-24 116.3 158 44.3
SMO077G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.2e-23 115.9 260 33.1
AagrBONN_evm.TU.Sc2ySwM_344.2753 Anthoceros agrestis HOM05D004701 ORTHO05D005220 6.1e-23 113.6 424 27.1
MD14G1203300 Malus domestica HOM05D004701 ORTHO05D005220 3.0e-22 111.3 100 56.0
Oeu052446.1 Olea europaea HOM05D004701 ORTHO05D005220 6.8e-22 110.2 147 43.5
SMO212G0008 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.3e-20 105.9 139 43.2
MD14G1127800 Malus domestica HOM05D004701 ORTHO05D005220 1.7e-20 105.5 75 66.7
SMO077G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.7e-20 104.4 264 31.8
AagrBONN_evm.TU.Sc2ySwM_344.2754 Anthoceros agrestis HOM05D004701 ORTHO05D005220 4.5e-18 97.4 178 32.0
arahy.Tifrunner.gnm1.ann1.4DD1B6 Arachis hypogaea HOM05D004701 ORTHO05D005220 2.9e-17 94.7 134 41.8
CSS0009827 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 9.4e-16 89.7 87 51.7
CSS0002973 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 6.1e-15 87.0 87 51.7
CSS0048671 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 6.1e-15 87.0 87 51.7
SGA_v2.0_scaffold313G48342 Striga asiatica HOM05D004701 ORTHO05D005220 5.2e-14 84.0 129 41.9
Ah.11g048280 Amaranthus hybridus HOM05D004701 ORTHO05D005220 2.0e-13 82.0 81 48.1
Cpa.g.sc3599.1 Carica papaya HOM05D004701 ORTHO05D005220 3.4e-13 81.3 58 62.1
Haze_06052 Corylus avellana HOM05D022078 ORTHO05D024871 2.8e-12 78.2 83 48.2
CSS0034852 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 4.9e-12 77.4 87 48.3
Oeu052444.1 Olea europaea HOM05D004701 ORTHO05D005220 4.9e-12 77.4 58 53.4
Lsat_1_v5_gn_3_76880 Lactuca sativa HOM05D005083 ORTHO05D006310 1.1e-11 76.3 94 47.9
SMO032G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.4e-11 75.9 173 32.4
CSS0011657 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.1e-11 74.7 86 47.7
SMO286G0021 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.1e-11 74.3 170 30.6
MBI18_g07590_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 7.0e-11 73.6 50 66.0
SMO009G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 9.1e-11 73.2 165 33.3
Haze_06050 Corylus avellana HOM05D022078 ORTHO05D024871 7.7e-10 70.1 83 47.0
MELO3C028766.2 Cucumis melo HOM05D001162 ORTHO05D022475 1.9e-08 65.5 51 56.9
CSS0027371 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.2e-07 62.8 42 64.3
CSS0018594 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.6e-07 62.4 42 64.3
SalBow8G0867 Salvia bowleyana HOM05D001329 ORTHO05D004946 4.0e-06 57.8 47 57.4
MBI05_g10671_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 6.8e-06 57.0 34 73.5


User provided reference genes

Program Settings