Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g14530 Fragaria vesca HOM05D008369 ORTHO05D005932 1.8e-94 349.4 189 100.0
FAN18G3211 Fragaria x ananassa HOM05D008369 ORTHO05D005932 1.7e-92 342.8 189 92.6
FAN13G2099 Fragaria x ananassa HOM05D008369 ORTHO05D005932 3.5e-90 335.1 189 94.7
FAN08G2699 Fragaria x ananassa HOM05D008369 ORTHO05D005932 3.6e-87 325.1 189 93.1
RcHm_v2.0_Chr7g0182121 Rosa chinensis HOM05D008369 ORTHO05D005932 5.6e-64 248.1 187 74.9
MD14G1205100 Malus domestica HOM05D008369 ORTHO05D005932 1.0e-41 174.1 206 55.3
MD06G1197700 Malus domestica HOM05D008369 ORTHO05D005932 3.6e-39 165.6 206 56.3
Prupe.5G198500 Prunus persica HOM05D008369 ORTHO05D005932 2.7e-34 149.4 204 52.5
Duzib084G1416 Durio zibethinus HOM05D008369 ORTHO05D005932 3.4e-21 105.9 190 38.4
CSS0001536 Camellia sinensis var. sinensis HOM05D008369 ORTHO05D005932 1.1e-19 100.9 190 38.9
Cfa019277 Carpinus fangiana HOM05D008369 ORTHO05D005932 1.4e-19 100.5 213 42.3
COL.COLO4_36949 Corchorus olitorius HOM05D008369 ORTHO05D005932 5.5e-19 98.6 188 39.4
Ciclev10022335m.g Citrus clementina HOM05D008369 ORTHO05D005932 2.7e-18 96.3 188 39.9
CSS0024821 Camellia sinensis var. sinensis HOM05D008369 ORTHO05D005932 2.3e-17 93.2 190 36.8
Dinv38746 Davidia involucrata HOM05D008369 ORTHO05D005932 2.3e-17 93.2 216 35.2
Gohir.A11G032000 Gossypium hirsutum HOM05D008369 ORTHO05D005932 8.7e-17 91.3 176 37.5
Sed0006867 Sechium edule HOM05D008369 ORTHO05D005932 8.7e-17 91.3 191 33.5
Manes.06G089401 Manihot esculenta HOM05D000041 ORTHO05D006140 1.1e-16 90.9 192 39.6
Gohir.D11G035400 Gossypium hirsutum HOM05D008369 ORTHO05D005932 3.3e-16 89.4 177 36.7
Gorai.007G038200 Gossypium raimondii HOM05D008369 ORTHO05D005932 1.6e-15 87.0 178 39.9
Cc00_g25850 Coffea canephora HOM05D012087 ORTHO05D005932 3.1e-14 82.8 211 37.0
Dinv10658 Davidia involucrata HOM05D008369 ORTHO05D005932 9.0e-14 81.3 180 37.8
Lalb_Chr12g0196981 Lupinus albus HOM05D008369 ORTHO05D005932 9.0e-14 81.3 185 40.0
Actinidia04866 Actinidia chinensis HOM05D008369 ORTHO05D005932 1.2e-13 80.9 175 35.4
Medtr4g108990 Medicago truncatula HOM05D008369 ORTHO05D005932 2.0e-13 80.1 180 31.1
Nitab4.5_0001211g0150 Nicotiana tabacum HOM05D012087 ORTHO05D005932 1.3e-12 77.4 231 30.7
arahy.Tifrunner.gnm1.ann1.G0M71R Arachis hypogaea HOM05D008369 ORTHO05D005932 1.7e-12 77.0 175 41.1
QL10p017723 Quercus lobata HOM05D008369 ORTHO05D005932 2.2e-12 76.6 214 35.5
Thecc.03G094300 Theobroma cacao HOM05D008369 ORTHO05D005932 2.9e-12 76.3 179 35.8
arahy.Tifrunner.gnm1.ann1.7B8RN4 Arachis hypogaea HOM05D008369 ORTHO05D005932 1.1e-11 74.3 183 41.0
Lj4g0010683 Lotus japonicus HOM05D008369 ORTHO05D005932 4.2e-11 72.4 179 38.0
Rhsim08G0152100 Rhododendron simsii HOM05D008369 ORTHO05D005932 4.2e-11 72.4 167 35.3
Haze_07652 Corylus avellana HOM05D008369 ORTHO05D005932 5.5e-11 72.0 205 29.8
PGR044G0243 Punica granatum HOM05D008369 ORTHO05D005932 1.2e-10 70.9 217 30.0
Psat4g049480 Pisum sativum HOM05D008369 ORTHO05D005932 1.6e-10 70.5 186 38.2
TAR006G0004 Trochodendron aralioides HOM05D009095 ORTHO05D005932 2.1e-10 70.1 206 35.4
ClCG04G012080 Citrullus lanatus HOM05D008369 ORTHO05D005932 3.5e-10 69.3 168 39.3
CsaV3_1G005690 Cucumis sativus L. HOM05D008369 ORTHO05D005932 3.5e-10 69.3 192 39.1
Nitab4.5_0005900g0030 Nicotiana tabacum HOM05D012087 ORTHO05D005932 3.5e-10 69.3 234 29.5
TPR.G2001 Trifolium pratense HOM05D008369 ORTHO05D005932 6.1e-10 68.6 184 32.6
MELO3C002000.2 Cucumis melo HOM05D008369 ORTHO05D005932 1.8e-09 67.0 186 38.7
CANSAT80G1936 Cannabis sativa HOM05D008369 ORTHO05D005932 6.7e-09 65.1 205 35.1
Phvul.003G188100 Phaseolus vulgaris HOM05D008369 ORTHO05D005932 3.3e-08 62.8 150 31.3
Ciclev10032785m.g Citrus clementina HOM05D009095 ORTHO05D005932 4.3e-08 62.4 201 29.9
Migut.L01243 Erythranthe guttata HOM05D009095 ORTHO05D005932 4.3e-08 62.4 188 30.9
Dinv34096 Davidia involucrata HOM05D009095 ORTHO05D005932 5.7e-08 62.0 191 33.5
Glyma.05G024700 Glycine max HOM05D008369 ORTHO05D005932 5.7e-08 62.0 149 30.2
Hund09825 Selenicereus undatus HOM05D008369 ORTHO05D005932 9.7e-08 61.2 154 33.8
VMungo1215G3129 Vigna mungo HOM05D008369 ORTHO05D005932 1.3e-07 60.8 163 30.1
DCAR_026037 Daucus carota HOM05D008369 ORTHO05D005932 1.6e-07 60.5 149 34.9
TWI56G0627 Tripterygium wilfordii HOM05D009095 ORTHO05D005932 2.8e-07 59.7 194 29.4
vmacro17570 Vaccinium macrocarpon HOM05D008369 ORTHO05D005932 3.7e-07 59.3 157 31.8
Gohir.A12G179000 Gossypium hirsutum HOM05D008369 ORTHO05D005932 6.3e-07 58.5 168 32.1
Gorai.008G194900 Gossypium raimondii HOM05D008369 ORTHO05D005932 6.3e-07 58.5 168 31.5
Thecc.02G339500 Theobroma cacao HOM05D009095 ORTHO05D005932 2.4e-06 56.6 211 31.3
Ah.02g113780 Amaranthus hybridus HOM05D008369 ORTHO05D005932 4.1e-06 55.8 191 27.7
Gohir.D12G181600 Gossypium hirsutum HOM05D008369 ORTHO05D005932 4.1e-06 55.8 168 31.0
Manes.05G106200 Manihot esculenta HOM05D009095 ORTHO05D005932 5.3e-06 55.5 201 31.8
Sopen03g034710 Solanum pennellii HOM05D012087 ORTHO05D005932 5.3e-06 55.5 220 32.7
PGSC0003DMG400024562 Solanum tuberosum HOM05D012087 ORTHO05D005932 5.3e-06 55.5 227 30.4
vmacro01343 Vaccinium macrocarpon HOM05D009095 ORTHO05D005932 6.9e-06 55.1 146 33.6
Lsat_1_v5_gn_1_14361 Lactuca sativa HOM05D008369 ORTHO05D005932 9.0e-06 54.7 163 27.6


User provided reference genes

Program Settings