Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g13400 Fragaria vesca HOM05D003025 ORTHO05D003305 1.8e-209 732.6 448 100.0
FAN18G0971 Fragaria x ananassa HOM05D003025 ORTHO05D003305 1.1e-206 723.4 448 98.9
FAN13G2721 Fragaria x ananassa HOM05D003025 ORTHO05D003305 5.3e-190 667.9 448 92.9
RcHm_v2.0_Chr7g0183741 Rosa chinensis HOM05D003025 ORTHO05D003305 8.4e-127 458.0 448 59.8
Prupe.5G210100 Prunus persica HOM05D003025 ORTHO05D003305 9.2e-57 225.3 498 38.0
MD06G1205800 Malus domestica HOM05D003025 ORTHO05D003305 3.3e-54 216.9 474 36.7
MD14G1216700 Malus domestica HOM05D003025 ORTHO05D003305 4.4e-35 153.3 460 33.5
Dinv38641 Davidia involucrata HOM05D003025 ORTHO05D003305 3.2e-25 120.6 520 28.1
QL10p020762 Quercus lobata HOM05D011573 ORTHO05D003305 1.3e-23 115.2 484 27.1
Nn4g23540 Nelumbo nucifera HOM05D003025 ORTHO05D003305 2.6e-19 100.9 390 27.9
Ciclev10021731m.g Citrus clementina HOM05D003025 ORTHO05D003305 1.4e-17 95.1 383 27.7
Sabra15G0078800 Salix brachista HOM05D003025 ORTHO05D003305 2.4e-17 94.4 469 28.4
GSVIVG01008155001 Vitis vinifera HOM05D003025 ORTHO05D003305 2.4e-17 94.4 398 28.4
Gorai.013G097400 Gossypium raimondii HOM05D003025 ORTHO05D003305 1.2e-16 92.0 81 60.5
Potri.015G048400 Populus trichocarpa HOM05D003025 ORTHO05D003305 1.6e-16 91.7 473 27.7
Lj6A773T133 Lonicera japonica HOM05D003025 ORTHO05D003305 6.0e-16 89.7 81 59.3
CANSAT80G0192 Cannabis sativa HOM05D003025 ORTHO05D003305 1.0e-15 89.0 438 27.6
ClCG06G015430 Citrullus lanatus HOM05D025218 ORTHO05D025068 1.0e-15 89.0 395 27.6
Lsat_1_v5_gn_8_37061 Lactuca sativa HOM05D003025 ORTHO05D003305 1.0e-15 89.0 81 59.3
CSS0010260 Camellia sinensis var. sinensis HOM05D003025 ORTHO05D003305 1.3e-15 88.6 82 54.9
Lj2g0017874 Lotus japonicus HOM05D003025 ORTHO05D003305 3.0e-15 87.4 81 55.6
Hma1.2p1_0428F.1_g150820 Hydrangea macrophylla HOM05D003025 ORTHO05D003305 3.9e-15 87.0 81 56.8
HanXRQChr08g0215591 Helianthus annuus HOM05D003025 ORTHO05D003305 5.1e-15 86.7 81 58.0
CANSAT64G2528 Cannabis sativa HOM05D003025 ORTHO05D003305 6.6e-15 86.3 81 54.3
Potri.010G138100 Populus trichocarpa HOM05D003025 ORTHO05D003305 6.6e-15 86.3 81 56.8
TAR622G0187 Trochodendron aralioides HOM05D003025 ORTHO05D003305 8.7e-15 85.9 397 26.2
COL.COLO4_27800 Corchorus olitorius HOM05D003025 ORTHO05D003305 1.5e-14 85.1 456 26.8
Glyma.02G122700 Glycine max HOM05D003025 ORTHO05D003305 1.5e-14 85.1 81 56.8
Sabra08G0084400 Salix brachista HOM05D003025 ORTHO05D003305 1.9e-14 84.7 81 56.8
Gohir.A12G159500 Gossypium hirsutum HOM05D003025 ORTHO05D003305 2.5e-14 84.3 78 57.7
Potri.008G111800 Populus trichocarpa HOM05D003025 ORTHO05D003305 2.5e-14 84.3 81 56.8
Actinidia19904 Actinidia chinensis HOM05D003025 ORTHO05D003305 3.3e-14 84.0 81 55.6
MD13G1056500 Malus domestica HOM05D003025 ORTHO05D003305 3.3e-14 84.0 78 53.8
Duzib248G1661 Durio zibethinus HOM05D003025 ORTHO05D003305 5.6e-14 83.2 81 56.8
Gorai.005G147700 Gossypium raimondii HOM05D003025 ORTHO05D003305 7.3e-14 82.8 422 27.5
HanXRQChr12g0365071 Helianthus annuus HOM05D003025 ORTHO05D003305 7.3e-14 82.8 78 59.0
Phvul.003G038300 Phaseolus vulgaris HOM05D003025 ORTHO05D003305 7.3e-14 82.8 82 58.5
Cc11_g11550 Coffea canephora HOM05D003025 ORTHO05D003305 9.6e-14 82.4 81 54.3
Eucgr.G02421 Eucalyptus grandis HOM05D003025 ORTHO05D003305 9.6e-14 82.4 86 55.8
VMungo1215G0401 Vigna mungo HOM05D003025 ORTHO05D003305 9.6e-14 82.4 82 58.5
Actinidia31928 Actinidia chinensis HOM05D003025 ORTHO05D003305 1.3e-13 82.0 80 55.0
Prupe.1G293500 Prunus persica HOM05D003025 ORTHO05D003305 1.3e-13 82.0 79 53.2
Dinv15582 Davidia involucrata HOM05D003025 ORTHO05D003305 2.1e-13 81.3 81 54.3
Gohir.D12G162800 Gossypium hirsutum HOM05D003025 ORTHO05D003305 2.1e-13 81.3 78 56.4
Gorai.008G175400 Gossypium raimondii HOM05D003025 ORTHO05D003305 2.1e-13 81.3 78 56.4
MSTRG.7727 Avicennia marina HOM05D003025 ORTHO05D003305 2.8e-13 80.9 79 53.2
Glyma.01G064900 Glycine max HOM05D003025 ORTHO05D003305 2.8e-13 80.9 82 56.1
CsaV3_5G033470 Cucumis sativus L. HOM05D003025 ORTHO05D003305 3.6e-13 80.5 80 56.2
DCAR_030058 Daucus carota HOM05D003025 ORTHO05D003305 3.6e-13 80.5 407 26.0
Lalb_Chr10g0099151 Lupinus albus HOM05D003025 ORTHO05D003305 3.6e-13 80.5 65 60.0
MD16G1055400 Malus domestica HOM05D003025 ORTHO05D003305 3.6e-13 80.5 78 52.6
Manes.06G079500 Manihot esculenta HOM05D003025 ORTHO05D003305 3.6e-13 80.5 81 53.1
PSO478G4016 Papaver somniferum HOM05D003025 ORTHO05D003305 3.6e-13 80.5 82 52.4
Thecc.02G322700 Theobroma cacao HOM05D003025 ORTHO05D003305 3.6e-13 80.5 81 54.3
CiPaw.06G095000 Carya illinoinensis HOM05D003025 ORTHO05D003305 4.8e-13 80.1 82 52.4
ClCG05G023550 Citrullus lanatus HOM05D003025 ORTHO05D003305 4.8e-13 80.1 70 60.0
Duzib251G0179 Durio zibethinus HOM05D003025 ORTHO05D003305 4.8e-13 80.1 76 55.3
MBI15_g31908_MAGBIO Magnolia biondii HOM05D003025 ORTHO05D003305 4.8e-13 80.1 422 27.5
Gohir.A03G106600 Gossypium hirsutum HOM05D003025 ORTHO05D003305 6.2e-13 79.7 420 26.9
vmacro01298 Vaccinium macrocarpon HOM05D003025 ORTHO05D003305 6.2e-13 79.7 79 55.7
arahy.Tifrunner.gnm1.ann1.161SS5 Arachis hypogaea HOM05D003025 ORTHO05D003305 8.1e-13 79.3 82 54.9
Manes.14G090300 Manihot esculenta HOM05D003025 ORTHO05D003305 1.1e-12 79.0 413 25.7
MSTRG.781 Avicennia marina HOM05D003025 ORTHO05D003305 1.4e-12 78.6 79 51.9
ClCG08G010610 Citrullus lanatus HOM05D003025 ORTHO05D003305 1.4e-12 78.6 81 53.1
CsaV3_6G033910 Cucumis sativus L. HOM05D003025 ORTHO05D003305 1.4e-12 78.6 81 53.1
Gohir.D02G131800 Gossypium hirsutum HOM05D003025 ORTHO05D003305 1.4e-12 78.6 413 25.7
Lalb_Chr17g0341461 Lupinus albus HOM05D003025 ORTHO05D003305 1.4e-12 78.6 67 58.2
Sed0001557 Sechium edule HOM05D003025 ORTHO05D003305 1.4e-12 78.6 81 53.1
Gohir.A13G088100 Gossypium hirsutum HOM05D003025 ORTHO05D003305 1.8e-12 78.2 413 25.7
PSO017G6048 Papaver somniferum HOM05D003025 ORTHO05D003305 1.8e-12 78.2 82 51.2
Hund09959 Selenicereus undatus HOM05D003025 ORTHO05D003305 2.4e-12 77.8 67 56.7
MELO3C011401.2 Cucumis melo HOM05D003025 ORTHO05D003305 3.1e-12 77.4 81 51.9
SGA_v2.0_scaffold16G07826 Striga asiatica HOM05D003025 ORTHO05D003305 3.1e-12 77.4 65 56.9
Duzib205G1035 Durio zibethinus HOM05D003025 ORTHO05D003305 4.0e-12 77.0 380 28.7
Hma1.2p1_0060F.1_g032730 Hydrangea macrophylla HOM05D003025 ORTHO05D003305 6.9e-12 76.3 63 57.1
Oeu024157.1 Olea europaea HOM05D003025 ORTHO05D003305 6.9e-12 76.3 78 51.3
Os04g0467100 Oryza sativa ssp. japonica HOM05D003025 ORTHO05D003305 6.9e-12 76.3 55 63.6
HPP92_015551 Vanilla planifolia HOM05D003025 ORTHO05D003305 6.9e-12 76.3 64 59.4
Gorai.001G067100 Gossypium raimondii HOM05D003025 ORTHO05D003305 9.0e-12 75.9 64 57.8
PSO782G5508 Papaver somniferum HOM05D003025 ORTHO05D003305 9.0e-12 75.9 71 54.9
Gohir.D13G085500 Gossypium hirsutum HOM05D003025 ORTHO05D003305 1.2e-11 75.5 423 25.8
SGA_v2.0_scaffold59G20657 Striga asiatica HOM05D003025 ORTHO05D003305 1.2e-11 75.5 77 55.8
HanXRQChr16g0528681 Helianthus annuus HOM05D003025 ORTHO05D003305 1.5e-11 75.1 78 51.3
THA.LOC104805213 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 1.5e-11 75.1 81 48.1
CDE10G0152 Ceratophyllum demersum HOM05D003025 ORTHO05D003305 2.6e-11 74.3 64 56.2
Nitab4.5_0001071g0040 Nicotiana tabacum HOM05D003025 ORTHO05D003305 2.6e-11 74.3 81 51.9
HanXRQChr17g0568661 Helianthus annuus HOM05D003025 ORTHO05D003305 4.5e-11 73.6 81 48.1
THA.LOC104801838 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 4.5e-11 73.6 72 52.8
unitig_62.g23701 Utricularia gibba HOM05D003025 ORTHO05D003305 7.6e-11 72.8 78 52.6
Gohir.A07G058700 Gossypium hirsutum HOM05D003025 ORTHO05D003305 9.9e-11 72.4 63 57.1
Gohir.D07G063600 Gossypium hirsutum HOM05D003025 ORTHO05D003305 9.9e-11 72.4 63 57.1
SGA_v2.0_scaffold287G47189 Striga asiatica HOM05D003025 ORTHO05D003305 1.3e-10 72.0 73 47.9
vmacro10474 Vaccinium macrocarpon HOM05D003025 ORTHO05D003305 1.3e-10 72.0 68 55.9
GSVIVG01010102001 Vitis vinifera HOM05D003025 ORTHO05D003305 1.3e-10 72.0 380 25.8
AUR62003057 Chenopodium quinoa HOM05D003025 ORTHO05D003305 1.7e-10 71.6 81 45.7
TAR374G0527 Trochodendron aralioides HOM05D003025 ORTHO05D003305 1.7e-10 71.6 414 25.4
AUR62007872 Chenopodium quinoa HOM05D003025 ORTHO05D003305 2.2e-10 71.2 81 45.7
Lalb_Chr04g0255461 Lupinus albus HOM05D003025 ORTHO05D003305 2.2e-10 71.2 76 48.7
Oeu062245.1 Olea europaea HOM05D003025 ORTHO05D003305 2.2e-10 71.2 78 50.0
Solyc04g005290.3 Solanum lycopersicum HOM05D003025 ORTHO05D003305 2.2e-10 71.2 395 25.8
Zm00001eb080280 Zea mays HOM05D041475 ORTHO05D003305 2.9e-10 70.9 76 47.4
Oeu003749.3 Olea europaea HOM05D003025 ORTHO05D003305 3.8e-10 70.5 68 51.5
Sed0017206 Sechium edule HOM05D003025 ORTHO05D003305 4.9e-10 70.1 70 55.7
ATR0691G160 Amborella trichopoda HOM05D003025 ORTHO05D003305 6.4e-10 69.7 73 53.4
CiPaw.05G121600 Carya illinoinensis HOM05D003025 ORTHO05D003305 6.4e-10 69.7 437 24.3
Dinv34020 Davidia involucrata HOM05D003025 ORTHO05D003305 6.4e-10 69.7 81 46.9
Sabra10G0106400 Salix brachista HOM05D003025 ORTHO05D003305 6.4e-10 69.7 81 49.4
Actinidia07767 Actinidia chinensis HOM05D003025 ORTHO05D003305 1.1e-09 68.9 470 24.5
A06p42840 Brassica napus HOM05D003025 ORTHO05D003305 1.1e-09 68.9 75 49.3
BraA06t27196Z Brassica rapa HOM05D003025 ORTHO05D003305 1.1e-09 68.9 75 49.3
HPP92_018243 Vanilla planifolia HOM05D003025 ORTHO05D003305 1.1e-09 68.9 57 59.6
MELO3C017252.2 Cucumis melo HOM05D025218 ORTHO05D025068 1.4e-09 68.6 160 31.9
TWI31G1177 Tripterygium wilfordii HOM05D003025 ORTHO05D003305 1.9e-09 68.2 390 25.6
VMungo0251G3127 Vigna mungo HOM05D003025 ORTHO05D003305 1.9e-09 68.2 77 48.1
BcaC06g31142 Brassica carinata HOM05D003025 ORTHO05D003305 3.2e-09 67.4 70 51.4
BolC7t43953H Brassica oleracea HOM05D003025 ORTHO05D003305 3.2e-09 67.4 70 51.4
unitig_52.g17161 Utricularia gibba HOM05D003025 ORTHO05D003305 3.2e-09 67.4 65 53.8
PGSC0003DMG400001936 Solanum tuberosum HOM05D003025 ORTHO05D003305 4.2e-09 67.0 392 23.2
PGR102G2660 Punica granatum HOM05D003025 ORTHO05D003305 5.4e-09 66.6 419 25.1
CiPaw.16G080200 Carya illinoinensis HOM05D003025 ORTHO05D003305 7.1e-09 66.2 436 26.1
ECA233G1104 Erigeron canadensis HOM05D003025 ORTHO05D003305 7.1e-09 66.2 69 53.6
Oeu021806.1 Olea europaea HOM05D003025 ORTHO05D003305 7.1e-09 66.2 79 48.1
PSO063G1603 Papaver somniferum HOM05D003025 ORTHO05D003305 7.1e-09 66.2 448 22.8
TPR.G38556 Trifolium pratense HOM05D003025 ORTHO05D003305 7.1e-09 66.2 81 45.7
CDE10G0686 Ceratophyllum demersum HOM05D003025 ORTHO05D003305 9.3e-09 65.9 70 51.4
Os02g0582100 Oryza sativa ssp. japonica HOM05D003025 ORTHO05D003305 9.3e-09 65.9 57 56.1
Sed0026748 Sechium edule HOM05D025218 ORTHO05D025068 9.3e-09 65.9 399 25.8
SEGI_24332 Sequoiadendron giganteum HOM05D066507 ORTHO05D003305 1.2e-08 65.5 68 52.9
unitig_22.g5562 Utricularia gibba HOM05D003025 ORTHO05D003305 1.2e-08 65.5 78 50.0
Aqoxy3G03750 Aquilegia oxysepala HOM05D003025 ORTHO05D003305 1.6e-08 65.1 72 50.0
Ca_05068_v3 Cicer arietinum L. HOM05D003025 ORTHO05D003305 1.6e-08 65.1 81 44.4
Duzib084G0521 Durio zibethinus HOM05D003025 ORTHO05D003305 1.6e-08 65.1 69 50.7
Nitab4.5_0002491g0030 Nicotiana tabacum HOM05D003025 ORTHO05D003305 1.6e-08 65.1 96 43.8
BcaC04g21446 Brassica carinata HOM05D003025 ORTHO05D003305 2.1e-08 64.7 72 50.0
C09p31660 Brassica napus HOM05D003025 ORTHO05D003305 2.1e-08 64.7 72 50.0
BolC9t56021H Brassica oleracea HOM05D003025 ORTHO05D003305 2.1e-08 64.7 72 50.0
Lsat_1_v5_gn_3_105000 Lactuca sativa HOM05D003025 ORTHO05D003305 2.1e-08 64.7 73 46.6
PGSC0003DMG400025716 Solanum tuberosum HOM05D003025 ORTHO05D003305 2.1e-08 64.7 82 43.9
Sed0005774 Sechium edule HOM05D025218 ORTHO05D025068 2.7e-08 64.3 92 43.5
Medtr5g047930 Medicago truncatula HOM05D003025 ORTHO05D003305 3.5e-08 63.9 81 44.4
Sopen04g001270 Solanum pennellii HOM05D003025 ORTHO05D003305 3.5e-08 63.9 394 24.6
CSS0010060 Camellia sinensis var. sinensis HOM05D003025 ORTHO05D003305 4.6e-08 63.5 62 53.2
FAN07G1412 Fragaria x ananassa HOM05D003025 ORTHO05D003305 4.6e-08 63.5 58 58.6
unitig_8.g3969 Utricularia gibba HOM05D003025 ORTHO05D003305 4.6e-08 63.5 78 47.4
Peaxi162Scf00188g01025 Petunia axillaris HOM05D003025 ORTHO05D003305 6.0e-08 63.2 447 24.2
C02p51790 Brassica napus HOM05D003025 ORTHO05D003305 7.9e-08 62.8 81 45.7
HanXRQChr15g0475601 Helianthus annuus HOM05D003025 ORTHO05D003305 7.9e-08 62.8 82 43.9
Psat2g085960 Pisum sativum HOM05D003025 ORTHO05D003305 1.0e-07 62.4 81 43.2
EL10Ac6g14672 Beta vulgaris HOM05D003025 ORTHO05D003305 1.3e-07 62.0 71 46.5
Migut.E00253 Erythranthe guttata HOM05D003025 ORTHO05D003305 1.8e-07 61.6 81 44.4
FvH4_4g29290 Fragaria vesca HOM05D003025 ORTHO05D003305 1.8e-07 61.6 58 56.9
FAN17G1716 Fragaria x ananassa HOM05D003025 ORTHO05D003305 1.8e-07 61.6 58 56.9
FAN22G0063 Fragaria x ananassa HOM05D003025 ORTHO05D003305 1.8e-07 61.6 58 56.9
RcHm_v2.0_Chr4g0437341 Rosa chinensis HOM05D003025 ORTHO05D003305 1.8e-07 61.6 58 56.9
FAN12G3072 Fragaria x ananassa HOM05D003025 ORTHO05D003305 2.3e-07 61.2 58 56.9
Phvul.003G280500 Phaseolus vulgaris HOM05D003025 ORTHO05D003305 2.3e-07 61.2 57 52.6
Sc11g0002650 Simmondsia chinensis HOM05D003025 ORTHO05D003305 3.9e-07 60.5 75 40.0
THA.LOC104824052 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 3.9e-07 60.5 402 27.4
Zm00001eb245390 Zea mays HOM05D003025 ORTHO05D003305 5.1e-07 60.1 53 54.7
Lj3A1027T87 Lonicera japonica HOM05D003025 ORTHO05D003305 6.7e-07 59.7 396 24.2
Carub.0001s1338 Capsella rubella HOM05D003025 ORTHO05D003305 8.7e-07 59.3 67 49.3
Cpa.g.sc3.231 Carica papaya HOM05D041365 ORTHO05D034088 8.7e-07 59.3 149 30.2
Cc04_g08270 Coffea canephora HOM05D003025 ORTHO05D003305 8.7e-07 59.3 76 48.7
MBI14_g31150_MAGBIO Magnolia biondii HOM05D003025 ORTHO05D003305 8.7e-07 59.3 461 23.2
Thecc.03G108500 Theobroma cacao HOM05D003025 ORTHO05D003305 8.7e-07 59.3 452 24.1
Pp3c3_14390 Physcomitrium patens HOM05D067035 ORTHO05D003305 1.1e-06 58.9 57 56.1
Nitab4.5_0001196g0010 Nicotiana tabacum HOM05D003025 ORTHO05D003305 1.5e-06 58.5 111 36.0
CAN.G982.40 Capsicum annuum HOM05D017485 ORTHO05D020287 1.9e-06 58.2 57 59.6
BcaB02g06463 Brassica carinata HOM05D003025 ORTHO05D003305 2.5e-06 57.8 64 46.9
Rhsim09G0122100 Rhododendron simsii HOM05D003025 ORTHO05D003305 2.5e-06 57.8 418 24.6
Rhsim12G0071300 Rhododendron simsii HOM05D003025 ORTHO05D003305 2.5e-06 57.8 393 25.7
CsaV3_1G003330 Cucumis sativus L. HOM05D025218 ORTHO05D025068 3.3e-06 57.4 212 27.4
BcaB07g30644 Brassica carinata HOM05D003025 ORTHO05D003305 4.3e-06 57.0 54 53.7
Migut.L01161 Erythranthe guttata HOM05D003025 ORTHO05D003305 4.3e-06 57.0 399 22.6
Glyma.06G206200 Glycine max HOM05D011573 ORTHO05D014451 4.3e-06 57.0 126 32.5
ECA234G4845 Erigeron canadensis HOM05D003025 ORTHO05D003305 5.6e-06 56.6 63 54.0
PGSC0003DMG404024620 Solanum tuberosum HOM05D017485 ORTHO05D020287 5.6e-06 56.6 57 54.4
TPR.G14359 Trifolium pratense HOM05D011573 ORTHO05D014451 5.6e-06 56.6 72 44.4
TWI79G0747 Tripterygium wilfordii HOM05D003025 ORTHO05D003305 5.6e-06 56.6 395 25.3
Solyc03g114750.3 Solanum lycopersicum HOM05D017485 ORTHO05D020287 7.4e-06 56.2 57 54.4
arahy.Tifrunner.gnm1.ann1.8A7TRK Arachis hypogaea HOM05D011573 ORTHO05D014451 9.6e-06 55.8 55 58.2
arahy.Tifrunner.gnm1.ann1.8UFH9N Arachis hypogaea HOM05D003025 ORTHO05D003305 9.6e-06 55.8 430 24.2
C05p11460 Brassica napus HOM05D003025 ORTHO05D003305 9.6e-06 55.8 64 45.3


User provided reference genes

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