Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g12751 Fragaria vesca HOM05D005816 ORTHO05D006915 5.3e-61 237.7 132 100.0
FAN18G0325 Fragaria x ananassa HOM05D005816 ORTHO05D006915 4.2e-42 174.9 103 98.1
Prupe.5G216700 Prunus persica HOM05D005816 ORTHO05D006915 7.2e-18 94.4 124 46.8
Duzib205G0672 Durio zibethinus HOM05D005816 ORTHO05D006915 5.2e-16 88.2 109 53.2
Manes.05G118800 Manihot esculenta HOM05D005816 ORTHO05D006915 6.7e-16 87.8 105 46.7
Phvul.003G177600 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 6.7e-16 87.8 106 54.7
MD06G1210600 Malus domestica HOM05D005816 ORTHO05D006915 8.8e-16 87.4 123 45.5
MD14G1221300 Malus domestica HOM05D005816 ORTHO05D006915 4.8e-14 81.6 120 45.0
Gohir.D07G042900 Gossypium hirsutum HOM05D005816 ORTHO05D006915 8.2e-14 80.9 99 47.5
PGR044G2006 Punica granatum HOM05D005816 ORTHO05D006915 1.1e-13 80.5 104 49.0
TAR629G1032 Trochodendron aralioides HOM05D005816 ORTHO05D006915 1.1e-13 80.5 113 42.5
Gorai.001G045900 Gossypium raimondii HOM05D005816 ORTHO05D006915 1.4e-13 80.1 99 47.5
Duzib251G0462 Durio zibethinus HOM05D005816 ORTHO05D006915 1.8e-13 79.7 112 44.6
Nn4g23710 Nelumbo nucifera HOM05D005816 ORTHO05D006915 3.1e-13 79.0 123 43.9
Gohir.A07G038800 Gossypium hirsutum HOM05D005816 ORTHO05D006915 4.1e-13 78.6 99 44.4
Manes.14G096700 Manihot esculenta HOM05D005816 ORTHO05D006915 4.1e-13 78.6 116 42.2
COL.COLO4_22708 Corchorus olitorius HOM05D005816 ORTHO05D006915 5.3e-13 78.2 106 52.8
Sabra08G0087500 Salix brachista HOM05D005816 ORTHO05D006915 5.3e-13 78.2 115 45.2
CSS0007623 Camellia sinensis var. sinensis HOM05D005816 ORTHO05D006915 7.0e-13 77.8 106 46.2
Duzib248G0754 Durio zibethinus HOM05D005816 ORTHO05D006915 2.0e-12 76.3 110 43.6
COL.COLO4_07860 Corchorus olitorius HOM05D005816 ORTHO05D006915 2.6e-12 75.9 112 45.5
Lj4g0025770 Lotus japonicus HOM05D005816 ORTHO05D006915 2.6e-12 75.9 101 48.5
Nn3g17700 Nelumbo nucifera HOM05D005816 ORTHO05D006915 3.5e-12 75.5 118 42.4
PGR119G1376 Punica granatum HOM05D005816 ORTHO05D006915 3.5e-12 75.5 122 41.8
SalBow8G0077 Salvia bowleyana HOM05D005816 ORTHO05D006915 3.5e-12 75.5 129 41.1
Hma1.2p1_0862F.1_g229870 Hydrangea macrophylla HOM05D005816 ORTHO05D006915 4.5e-12 75.1 111 40.5
Potri.008G115600 Populus trichocarpa HOM05D005816 ORTHO05D006915 4.5e-12 75.1 115 42.6
Gohir.D13G069300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.0e-11 73.9 126 40.5
Sopen03g038660 Solanum pennellii HOM05D005816 ORTHO05D006915 1.3e-11 73.6 96 42.7
Thecc.02G362100 Theobroma cacao HOM05D005816 ORTHO05D006915 1.7e-11 73.2 114 42.1
Gohir.A11G007200 Gossypium hirsutum HOM05D005816 ORTHO05D006915 2.2e-11 72.8 102 43.1
Gohir.D11G006300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 2.2e-11 72.8 102 43.1
Gorai.013G079400 Gossypium raimondii HOM05D005816 ORTHO05D006915 2.2e-11 72.8 126 39.7
Lalb_Chr07g0178581 Lupinus albus HOM05D005816 ORTHO05D006915 2.2e-11 72.8 111 45.0
Glyma.05G013600 Glycine max HOM05D005816 ORTHO05D006915 2.9e-11 72.4 114 43.9
Gorai.007G007600 Gossypium raimondii HOM05D005816 ORTHO05D006915 2.9e-11 72.4 102 42.2
QL01p001040 Quercus lobata HOM05D005816 ORTHO05D006915 2.9e-11 72.4 118 39.8
PGSC0003DMG400005703 Solanum tuberosum HOM05D005816 ORTHO05D006915 3.8e-11 72.0 96 41.7
Gohir.A13G071300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 6.5e-11 71.2 126 38.1
Ciclev10033717m.g Citrus clementina HOM05D005816 ORTHO05D006915 8.5e-11 70.9 126 38.1
Atru.chr11.1371 Acer truncatum HOM05D005816 ORTHO05D006915 1.1e-10 70.5 152 34.9
CiPaw.15G002700 Carya illinoinensis HOM05D005816 ORTHO05D006915 1.1e-10 70.5 130 40.0
Thecc.03G027700 Theobroma cacao HOM05D005816 ORTHO05D006915 1.1e-10 70.5 105 44.8
Aqoxy3G00384 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 1.5e-10 70.1 106 48.1
TPR.G26768 Trifolium pratense HOM05D005816 ORTHO05D006915 2.5e-10 69.3 114 46.5
Cc11_g10680 Coffea canephora HOM05D005816 ORTHO05D006915 3.2e-10 68.9 112 42.0
Lsat_1_v5_gn_4_19200 Lactuca sativa HOM05D005816 ORTHO05D006915 3.2e-10 68.9 111 43.2
Manes.06G073000 Manihot esculenta HOM05D005816 ORTHO05D006915 3.2e-10 68.9 121 41.3
Potri.010G130400 Populus trichocarpa HOM05D005816 ORTHO05D006915 3.2e-10 68.9 115 38.3
VMungo0720G2795 Vigna mungo HOM05D005816 ORTHO05D006915 4.2e-10 68.6 109 38.5
Glyma.10G205100 Glycine max HOM05D005816 ORTHO05D006915 5.5e-10 68.2 115 39.1
Glyma.17G121800 Glycine max HOM05D005816 ORTHO05D006915 5.5e-10 68.2 110 47.3
Potri.012G059600 Populus trichocarpa HOM05D005816 ORTHO05D006915 5.5e-10 68.2 103 38.8
Gohir.D02G116175 Gossypium hirsutum HOM05D005816 ORTHO05D006915 7.2e-10 67.8 98 46.9
Prupe.1G304500 Prunus persica HOM05D005816 ORTHO05D006915 7.2e-10 67.8 122 40.2
BcaB05g24412 Brassica carinata HOM05D005816 ORTHO05D006915 9.4e-10 67.4 120 40.8
Thhalv10019753m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 1.6e-09 66.6 110 40.9
Oeu024099.1 Olea europaea HOM05D005816 ORTHO05D006915 1.6e-09 66.6 104 44.2
Phvul.007G101800 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 1.6e-09 66.6 113 36.3
TPR.G9813 Trifolium pratense HOM05D005816 ORTHO05D006915 1.6e-09 66.6 125 35.2
CARHR067080 Cardamine hirsuta HOM05D005816 ORTHO05D006915 2.1e-09 66.2 115 34.8
Aqoxy3G03898 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 3.6e-09 65.5 106 41.5
AL2G27750 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 3.6e-09 65.5 119 37.8
A07p39820 Brassica napus HOM05D005816 ORTHO05D006915 3.6e-09 65.5 109 38.5
BraA07t31528Z Brassica rapa HOM05D005816 ORTHO05D006915 3.6e-09 65.5 109 38.5
CiPaw.16G002600 Carya illinoinensis HOM05D005816 ORTHO05D006915 3.6e-09 65.5 117 37.6
Medtr8g076990 Medicago truncatula HOM05D005816 ORTHO05D006915 3.6e-09 65.5 73 49.3
VMungo1215G1388 Vigna mungo HOM05D005816 ORTHO05D006915 3.6e-09 65.5 118 47.5
AL2G33800 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 4.7e-09 65.1 115 37.4
Sc11g0003040 Simmondsia chinensis HOM05D005816 ORTHO05D006915 4.7e-09 65.1 109 38.5
BcaB03g15849 Brassica carinata HOM05D005816 ORTHO05D006915 6.1e-09 64.7 119 37.8
BcaC08g46825 Brassica carinata HOM05D005816 ORTHO05D006915 6.1e-09 64.7 108 37.0
C06p48080 Brassica napus HOM05D005816 ORTHO05D006915 6.1e-09 64.7 108 38.0
Oeu041876.1 Olea europaea HOM05D005816 ORTHO05D006915 6.1e-09 64.7 109 37.6
Thhalv10019343m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 8.0e-09 64.3 118 39.8
Glyma.20G185400 Glycine max HOM05D005816 ORTHO05D006915 8.0e-09 64.3 114 36.0
Lalb_Chr13g0302361 Lupinus albus HOM05D005816 ORTHO05D006915 8.0e-09 64.3 102 44.1
Lalb_Chr21g0313371 Lupinus albus HOM05D005816 ORTHO05D006915 8.0e-09 64.3 137 34.3
FAN07G2890 Fragaria x ananassa HOM05D005816 ORTHO05D006915 1.0e-08 63.9 62 54.8
Lalb_Chr10g0099661 Lupinus albus HOM05D005816 ORTHO05D006915 1.0e-08 63.9 132 32.6
Psat4g043720 Pisum sativum HOM05D005816 ORTHO05D006915 1.0e-08 63.9 108 50.9
Medtr1g093800 Medicago truncatula HOM05D005816 ORTHO05D006915 1.4e-08 63.5 114 36.8
Sed0000064 Sechium edule HOM05D005816 ORTHO05D006915 1.4e-08 63.5 113 40.7
CiPaw.16G083700 Carya illinoinensis HOM05D005816 ORTHO05D006915 1.8e-08 63.2 113 44.2
Gohir.A03G097050 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.8e-08 63.2 99 46.5
HanXRQChr05g0149681 Helianthus annuus HOM05D005816 ORTHO05D006915 1.8e-08 63.2 109 41.3
HanXRQChr16g0528861 Helianthus annuus HOM05D005816 ORTHO05D006915 1.8e-08 63.2 103 39.8
Oeu044626.1 Olea europaea HOM05D005816 ORTHO05D006915 1.8e-08 63.2 104 37.5
THA.LOC104821965 Tarenaya hassleriana HOM05D005816 ORTHO05D006915 1.8e-08 63.2 117 38.5
Lsat_1_v5_gn_3_58221 Lactuca sativa HOM05D005816 ORTHO05D006915 3.0e-08 62.4 104 39.4
Sopen05g005720 Solanum pennellii HOM05D005816 ORTHO05D006915 3.0e-08 62.4 66 60.6
Cpa.g.sc13.61 Carica papaya HOM05D005816 ORTHO05D006915 4.0e-08 62.0 63 58.7
CiPaw.15G126000 Carya illinoinensis HOM05D005816 ORTHO05D006915 4.0e-08 62.0 119 45.4
Dinv36900 Davidia involucrata HOM05D005816 ORTHO05D006915 4.0e-08 62.0 101 38.6
PGSC0003DMG400000830 Solanum tuberosum HOM05D005816 ORTHO05D006915 4.0e-08 62.0 112 45.5
RcHm_v2.0_Chr4g0435951 Rosa chinensis HOM05D005816 ORTHO05D006915 5.2e-08 61.6 124 40.3
Atru.chr9.746 Acer truncatum HOM05D005816 ORTHO05D006915 6.7e-08 61.2 64 57.8
BolC6t39843H Brassica oleracea HOM05D005816 ORTHO05D006915 6.7e-08 61.2 108 37.0
Carub.0002s1536 Capsella rubella HOM05D005816 ORTHO05D006915 6.7e-08 61.2 124 35.5
MELO3C005357.2 Cucumis melo HOM05D005816 ORTHO05D006915 8.8e-08 60.8 124 35.5
Eucgr.B00694 Eucalyptus grandis HOM05D005816 ORTHO05D006915 8.8e-08 60.8 103 45.6
Solyc05g009915.1 Solanum lycopersicum HOM05D005816 ORTHO05D006915 8.8e-08 60.8 114 40.4
Aa31LG4G4260 Aethionema arabicum HOM05D005816 ORTHO05D006915 1.2e-07 60.5 106 36.8
AT1G73965 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 1.2e-07 60.5 111 35.1
CARHR061620 Cardamine hirsuta HOM05D005816 ORTHO05D006915 1.5e-07 60.1 115 39.1
FvH4_4g28190 Fragaria vesca HOM05D005816 ORTHO05D006915 1.5e-07 60.1 122 40.2
FAN12G1213 Fragaria x ananassa HOM05D005816 ORTHO05D006915 1.5e-07 60.1 122 40.2
Sp5g23900 Schrenkiella parvula HOM05D005816 ORTHO05D006915 1.5e-07 60.1 120 42.5
Sed0012991 Sechium edule HOM05D005816 ORTHO05D006915 1.5e-07 60.1 107 49.5
BcaC08g46328 Brassica carinata HOM05D005816 ORTHO05D006915 2.0e-07 59.7 119 38.7
BolC6t39316H Brassica oleracea HOM05D005816 ORTHO05D006915 2.0e-07 59.7 119 38.7
FAN17G1568 Fragaria x ananassa HOM05D005816 ORTHO05D006915 2.0e-07 59.7 122 40.2
Lsat_1_v5_gn_4_112260 Lactuca sativa HOM05D005816 ORTHO05D006915 3.3e-07 58.9 63 52.4
Carub.0002s2074 Capsella rubella HOM05D005816 ORTHO05D006915 4.4e-07 58.5 111 37.8
Migut.E00293 Erythranthe guttata HOM05D005816 ORTHO05D006915 4.4e-07 58.5 71 45.1
Sp5g29165 Schrenkiella parvula HOM05D005816 ORTHO05D006915 5.7e-07 58.2 107 36.4
MELO3C017284.2 Cucumis melo HOM05D005816 ORTHO05D006915 7.5e-07 57.8 118 42.4
BcaC03g14990 Brassica carinata HOM05D005816 ORTHO05D006915 9.7e-07 57.4 120 39.2
Eucgr.G02356 Eucalyptus grandis HOM05D005816 ORTHO05D006915 9.7e-07 57.4 75 46.7
Aa31sc79G90 Aethionema arabicum HOM05D005816 ORTHO05D006915 1.3e-06 57.0 106 34.9
AL1G55880 Arabidopsis lyrata HOM05D012335 ORTHO05D014421 1.3e-06 57.0 102 37.3
AT1G68795 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 1.3e-06 57.0 117 37.6
Migut.L01100 Erythranthe guttata HOM05D005816 ORTHO05D006915 1.3e-06 57.0 106 36.8
QL10p023002 Quercus lobata HOM05D005816 ORTHO05D006915 1.3e-06 57.0 112 44.6
HanXRQChr16g0502081 Helianthus annuus HOM05D005816 ORTHO05D006915 2.8e-06 55.8 67 56.7
BcaB04g17372 Brassica carinata HOM05D012335 ORTHO05D014421 3.7e-06 55.5 102 37.3
C08p04500 Brassica napus HOM05D012335 ORTHO05D014421 4.8e-06 55.1 102 37.3
BolC8t47255H Brassica oleracea HOM05D012335 ORTHO05D014421 4.8e-06 55.1 102 37.3
BraA08t32447Z Brassica rapa HOM05D012335 ORTHO05D014421 6.3e-06 54.7 102 36.3
Manes.01G021100 Manihot esculenta HOM05D005816 ORTHO05D006915 6.3e-06 54.7 78 41.0
A08p04230 Brassica napus HOM05D012335 ORTHO05D014421 8.2e-06 54.3 102 36.3


User provided reference genes

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