Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g12680 Fragaria vesca HOM05D005975 ORTHO05D007373 0.0e+00 1343.9 672 100.0
FAN18G3396 Fragaria x ananassa HOM05D005975 ORTHO05D007373 0.0e+00 1341.6 672 99.9
FAN04G2679 Fragaria x ananassa HOM05D005975 ORTHO05D007373 0.0e+00 1315.1 688 96.2
FAN08G0232 Fragaria x ananassa HOM05D005975 ORTHO05D007373 0.0e+00 1306.2 674 97.8
FAN13G1844 Fragaria x ananassa HOM05D005975 ORTHO05D007373 0.0e+00 1300.4 683 96.0
RcHm_v2.0_Chr7g0184651 Rosa chinensis HOM05D005975 ORTHO05D007373 0.0e+00 1266.1 677 94.4
MD14G1222100 Malus domestica HOM05D005975 ORTHO05D007373 0.0e+00 1157.5 679 86.2
MD06G1211600 Malus domestica HOM05D005975 ORTHO05D007373 0.0e+00 1146.0 679 85.1
Thecc.03G028700 Theobroma cacao HOM05D005975 ORTHO05D007373 0.0e+00 1075.8 682 81.1
CiPaw.15G127100 Carya illinoinensis HOM05D005975 ORTHO05D007373 3.2e-311 1071.2 693 78.4
Duzib205G1016 Durio zibethinus HOM05D005975 ORTHO05D007373 1.4e-306 1055.8 677 80.1
Gorai.007G007400 Gossypium raimondii HOM05D005975 ORTHO05D007373 1.8e-306 1055.4 677 78.4
Gohir.A11G007000 Gossypium hirsutum HOM05D005975 ORTHO05D007373 4.0e-306 1054.3 677 78.4
Gohir.D11G006100 Gossypium hirsutum HOM05D005975 ORTHO05D007373 4.4e-305 1050.8 677 78.0
Ciclev10019197m.g Citrus clementina HOM05D005975 ORTHO05D007373 6.4e-304 1047.0 659 79.8
Manes.05G139300 Manihot esculenta HOM05D005975 ORTHO05D007373 1.1e-303 1046.2 675 78.1
PGR083G1175 Punica granatum HOM05D005975 ORTHO05D007373 9.2e-303 1043.1 659 80.3
CSS0000913 Camellia sinensis var. sinensis HOM05D005975 ORTHO05D007373 3.3e-300 1034.6 690 76.8
Eucgr.B00701 Eucalyptus grandis HOM05D005975 ORTHO05D007373 1.0e-298 1029.6 656 78.4
Hma1.2p1_0592F.1_g185285 Hydrangea macrophylla HOM05D005975 ORTHO05D007373 8.9e-298 1026.5 673 77.3
ClCG06G015000 Citrullus lanatus HOM05D005975 ORTHO05D007373 2.0e-297 1025.4 676 77.8
Potri.015G049900 Populus trichocarpa HOM05D005975 ORTHO05D007373 2.6e-297 1025.0 673 77.1
GSVIVG01008239001 Vitis vinifera HOM05D005975 ORTHO05D007373 1.3e-296 1022.7 677 77.1
TAR622G0473 Trochodendron aralioides HOM05D005975 ORTHO05D007373 6.4e-296 1020.4 679 75.7
TAR374G1293 Trochodendron aralioides HOM05D005975 ORTHO05D007373 8.3e-296 1020.0 673 75.9
Haze_18619 Corylus avellana HOM05D005975 ORTHO05D007373 1.9e-295 1018.8 602 84.4
QL10p022556 Quercus lobata HOM05D005975 ORTHO05D007373 5.4e-295 1017.3 604 84.1
MELO3C017289.2 Cucumis melo HOM05D005975 ORTHO05D007373 2.7e-294 1015.0 674 77.0
PSO063G1047 Papaver somniferum HOM05D005975 ORTHO05D007373 4.6e-294 1014.2 658 76.9
Atru.chr9.776 Acer truncatum HOM05D005975 ORTHO05D007373 6.6e-293 1010.4 617 81.8
CsaV3_1G003650 Cucumis sativus L. HOM05D005975 ORTHO05D007373 6.6e-293 1010.4 674 77.0
Ca_23135_v3 Cicer arietinum L. HOM05D005975 ORTHO05D007373 3.3e-292 1008.1 677 75.9
Potri.012G060200 Populus trichocarpa HOM05D005975 ORTHO05D007373 1.2e-291 1006.1 675 75.4
PSO782G2585 Papaver somniferum HOM05D005975 ORTHO05D007373 6.2e-291 1003.8 657 76.4
Sed0024013 Sechium edule HOM05D005975 ORTHO05D007373 8.1e-291 1003.4 672 76.6
Rhsim08G0136800 Rhododendron simsii HOM05D005975 ORTHO05D007373 2.0e-289 998.8 675 74.7
Sabra12G0043300 Salix brachista HOM05D005975 ORTHO05D007373 4.4e-289 997.7 672 74.9
Dinv38586 Davidia involucrata HOM05D005975 ORTHO05D007373 7.5e-289 996.9 605 82.8
Glyma.04G152200 Glycine max HOM05D005975 ORTHO05D007373 1.3e-288 996.1 678 74.2
Glyma.17G121100 Glycine max HOM05D005975 ORTHO05D007373 1.3e-288 996.1 671 74.4
Phvul.009G200500 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 1.3e-288 996.1 676 74.4
Actinidia31028 Actinidia chinensis HOM05D005975 ORTHO05D007373 1.9e-287 992.3 651 76.8
Glyma.06G210800 Glycine max HOM05D005975 ORTHO05D007373 2.4e-287 991.9 673 74.3
Cc04_g07500 Coffea canephora HOM05D005975 ORTHO05D007373 1.2e-286 989.6 674 74.3
Lalb_Chr12g0197601 Lupinus albus HOM05D005975 ORTHO05D007373 1.2e-286 989.6 659 75.7
Lj1g0009400 Lotus japonicus HOM05D005975 ORTHO05D007373 2.7e-286 988.4 679 74.7
Aqoxy3G03906 Aquilegia oxysepala HOM05D005975 ORTHO05D007373 1.3e-285 986.1 678 73.0
Peaxi162Scf00015g00726 Petunia axillaris HOM05D005975 ORTHO05D007373 3.9e-285 984.6 652 75.0
AT1G73930 Arabidopsis thaliana HOM05D005975 ORTHO05D007373 1.5e-284 982.6 653 74.7
AUR62032193 Chenopodium quinoa HOM05D005975 ORTHO05D007373 1.9e-284 982.2 656 75.5
AL2G33760 Arabidopsis lyrata HOM05D005975 ORTHO05D007373 2.5e-284 981.9 652 74.1
Psat1g024880 Pisum sativum HOM05D005975 ORTHO05D007373 3.3e-284 981.5 676 73.8
Nitab4.5_0001599g0180 Nicotiana tabacum HOM05D005975 ORTHO05D007373 4.3e-284 981.1 668 73.7
AUR62036958 Chenopodium quinoa HOM05D005975 ORTHO05D007373 1.2e-283 979.5 657 75.2
Thhalv10018286m.g Eutrema salsugineum HOM05D005975 ORTHO05D007373 2.8e-283 978.4 652 74.8
DCAR_015134 Daucus carota HOM05D005975 ORTHO05D007373 4.0e-282 974.5 653 74.4
PGSC0003DMG400005625 Solanum tuberosum HOM05D005975 ORTHO05D007373 1.5e-281 972.6 663 73.9
HanXRQChr09g0269781 Helianthus annuus HOM05D005975 ORTHO05D007373 4.4e-281 971.1 648 74.4
Hund02524 Selenicereus undatus HOM05D005975 ORTHO05D007373 5.8e-281 970.7 654 74.6
Solyc03g119750.4 Solanum lycopersicum HOM05D005975 ORTHO05D007373 7.6e-281 970.3 666 73.3
CARHR067040 Cardamine hirsuta HOM05D005975 ORTHO05D007373 9.9e-281 969.9 654 74.2
Sopen03g038600 Solanum pennellii HOM05D005975 ORTHO05D007373 1.7e-280 969.1 665 73.1
TPR.G10356 Trifolium pratense HOM05D005975 ORTHO05D007373 3.2e-279 964.9 675 72.9
Cpa.g.sc549.1 Carica papaya HOM05D005975 ORTHO05D007373 5.4e-279 964.1 601 79.5
ECA232G0421 Erigeron canadensis HOM05D005975 ORTHO05D007373 9.2e-279 963.4 648 73.9
Prupe.5G217600 Prunus persica HOM05D005975 ORTHO05D007373 1.2e-278 963.0 544 88.8
Nitab4.5_0000410g0070 Nicotiana tabacum HOM05D005975 ORTHO05D007373 4.6e-278 961.1 662 73.3
Oeu024324.1 Olea europaea HOM05D005975 ORTHO05D007373 2.3e-277 958.7 673 72.7
Ah.11g047090 Amaranthus hybridus HOM05D005975 ORTHO05D007373 9.6e-276 953.4 648 74.2
SGA_v2.0_scaffold25G10981 Striga asiatica HOM05D005975 ORTHO05D007373 4.7e-275 951.0 650 72.8
VMungo1215G0359 Vigna mungo HOM05D005975 ORTHO05D007373 4.0e-274 948.0 654 72.0
Hund10002 Selenicereus undatus HOM05D005975 ORTHO05D007373 1.2e-273 946.4 655 72.5
Sc10g0009550 Simmondsia chinensis HOM05D005975 ORTHO05D007373 2.6e-273 945.3 662 72.5
vmacro17674 Vaccinium macrocarpon HOM05D005975 ORTHO05D007373 1.7e-272 942.6 600 77.2
VMungo1309G0041 Vigna mungo HOM05D005975 ORTHO05D007373 2.2e-272 942.2 600 77.0
MBI19_g38388_MAGBIO Magnolia biondii HOM05D005975 ORTHO05D007373 1.4e-271 939.5 668 71.0
A02p18950 Brassica napus HOM05D005975 ORTHO05D007373 3.2e-271 938.3 656 71.6
THA.LOC104808292 Tarenaya hassleriana HOM05D005975 ORTHO05D007373 3.2e-271 938.3 653 70.9
arahy.Tifrunner.gnm1.ann1.1K5T8S Arachis hypogaea HOM05D005975 ORTHO05D007373 9.3e-271 936.8 603 76.5
BolC2t09180H Brassica oleracea HOM05D005975 ORTHO05D007373 4.6e-270 934.5 656 71.6
BraA02t06937Z Brassica rapa HOM05D005975 ORTHO05D007373 6.0e-270 934.1 656 72.0
Lsat_1_v5_gn_3_10441 Lactuca sativa HOM05D005975 ORTHO05D007373 3.9e-269 931.4 648 72.2
BcaB05g24819 Brassica carinata HOM05D005975 ORTHO05D007373 2.5e-268 928.7 655 71.0
EL10Ac5g11254 Beta vulgaris HOM05D005975 ORTHO05D007373 1.3e-267 926.4 604 76.0
C02p31490 Brassica napus HOM05D005975 ORTHO05D007373 2.1e-267 925.6 656 71.2
BcaC03g15468 Brassica carinata HOM05D005975 ORTHO05D007373 4.8e-267 924.5 656 71.3
CAN.G438.116 Capsicum annuum HOM05D005975 ORTHO05D007373 5.3e-266 921.0 604 75.0
Migut.I00389 Erythranthe guttata HOM05D005975 ORTHO05D007373 5.3e-266 921.0 673 70.1
Sp5g29130 Schrenkiella parvula HOM05D005975 ORTHO05D007373 2.0e-265 919.1 652 70.9
Lj9A429T54 Lonicera japonica HOM05D005975 ORTHO05D007373 2.9e-264 915.2 605 75.7
MSTRG.22940 Avicennia marina HOM05D005975 ORTHO05D007373 2.4e-263 912.1 609 73.7
Aa31LG4G4220 Aethionema arabicum HOM05D005975 ORTHO05D007373 3.0e-261 905.2 652 69.9
ATR0753G136 Amborella trichopoda HOM05D005975 ORTHO05D007373 4.3e-252 874.8 741 61.1
SalBow5G4970 Salvia bowleyana HOM05D005975 ORTHO05D007373 6.7e-237 824.3 658 66.1
unitig_22.g6248 Utricularia gibba HOM05D005975 ORTHO05D007373 6.3e-235 817.8 639 65.1
Sabra15G0077800 Salix brachista HOM05D005975 ORTHO05D007373 1.4e-234 816.6 652 66.3
Phvul.003G176900 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 2.5e-231 805.8 520 76.0
Os03g0259700 Oryza sativa ssp. japonica HOM05D005975 ORTHO05D007373 1.2e-230 803.5 671 61.5
Glyma.05G013100 Glycine max HOM05D005975 ORTHO05D007373 1.8e-226 789.6 667 62.8
SEGI_09157 Sequoiadendron giganteum HOM05D005975 ORTHO05D007373 7.2e-223 777.7 775 54.5
COL.COLO4_22722 Corchorus olitorius HOM05D005975 ORTHO05D007373 3.2e-215 752.3 470 81.3
Pp3c4_11450 Physcomitrium patens HOM05D005975 ORTHO05D007373 7.2e-215 751.1 765 51.2
Pp3c12_18170 Physcomitrium patens HOM05D005975 ORTHO05D007373 2.7e-214 749.2 773 50.8
AagrBONN_evm.TU.Sc2ySwM_228.4839 Anthoceros agrestis HOM05D005975 ORTHO05D007373 2.3e-213 746.1 838 49.5
Zm00001eb011310 Zea mays HOM05D005975 ORTHO05D007373 1.8e-210 736.5 615 61.0
Mapoly0016s0160 Marchantia polymorpha HOM05D005975 ORTHO05D007373 8.5e-208 727.6 861 46.6
Carub.0002s2070 Capsella rubella HOM05D005975 ORTHO05D007373 1.8e-205 719.9 460 77.6
SMO367G0788 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 6.1e-190 668.3 630 53.7
Nn3g17719 Nelumbo nucifera HOM05D005975 ORTHO05D007373 1.7e-187 660.2 423 78.0
CDE05G1454 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 5.4e-170 602.1 538 59.7
CBR_g30105 Chara braunii HOM05D005975 ORTHO05D007373 1.1e-162 577.8 547 54.3
TAR622G1340 Trochodendron aralioides HOM05D005975 ORTHO05D007373 2.6e-156 556.6 440 66.8
PSO074G0001 Papaver somniferum HOM05D005975 ORTHO05D007373 2.9e-131 473.4 307 75.2
CDE05G3359 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 4.2e-122 443.0 393 60.3
arahy.Tifrunner.gnm1.ann1.CEL6SJ Arachis hypogaea HOM05D005975 ORTHO05D007373 2.9e-115 420.2 262 78.2
HPP92_016579 Vanilla planifolia HOM05D005975 ORTHO05D007373 6.5e-107 392.5 339 59.0
HPP92_016580 Vanilla planifolia HOM05D005975 ORTHO05D007373 9.4e-98 362.1 255 69.0
BcaB05g24817 Brassica carinata HOM05D005975 ORTHO05D007373 3.6e-97 360.1 215 80.5
Zm00001eb237870 Zea mays HOM05D005975 ORTHO05D007373 1.2e-89 335.1 542 40.0
SMO146G0145 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 2.5e-82 310.8 336 49.7
Zm00001eb078910 Zea mays HOM05D005975 ORTHO05D007373 1.4e-64 251.9 155 75.5
Nn3g18207 Nelumbo nucifera HOM05D005975 ORTHO05D007373 1.0e-43 182.6 140 67.1
CDE05G0573 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 4.0e-40 170.6 133 63.9
Cre14.g633500 Chlamydomonas reinhardtii HOM05D005975 ORTHO05D007373 3.4e-39 167.5 449 30.5
Dinv38585 Davidia involucrata HOM05D005975 ORTHO05D007373 4.9e-14 84.0 73 64.4
Cfa019814 Carpinus fangiana HOM05D005975 ORTHO05D007373 4.2e-13 80.9 67 65.7
Nn1g03516 Nelumbo nucifera HOM05D005975 ORTHO05D007373 1.1e-10 72.8 49 73.5
Nn4g23789 Nelumbo nucifera HOM05D005975 ORTHO05D007373 1.3e-09 69.3 88 44.3
Potri.001G289250 Populus trichocarpa HOM05D005975 ORTHO05D007373 1.2e-07 62.8 48 62.5
CAN.G438.117 Capsicum annuum HOM05D005975 ORTHO05D007373 5.9e-07 60.5 39 74.4
Lj9A429T53 Lonicera japonica HOM05D005975 ORTHO05D007373 2.9e-06 58.2 40 70.0


User provided reference genes

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