Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g12290 Fragaria vesca HOM05D005829 ORTHO05D007246 1.0e-97 360.1 192 100.0
FAN18G2130 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.0e-97 360.1 192 100.0
FAN18G3094 Fragaria x ananassa HOM05D005829 ORTHO05D007246 3.0e-97 358.6 192 94.8
FAN08G3097 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.1e-94 350.1 192 92.7
FAN13G0492 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.5e-93 346.3 192 91.7
FAN04G2288 Fragaria x ananassa HOM05D005829 ORTHO05D007246 5.8e-93 344.4 192 91.1
RcHm_v2.0_Chr7g0185261 Rosa chinensis HOM05D005829 ORTHO05D007246 7.3e-88 327.4 196 92.3
MD06G1215200 Malus domestica HOM05D005829 ORTHO05D007246 3.2e-67 258.8 201 70.6
Prupe.5G220500 Prunus persica HOM05D005829 ORTHO05D007246 3.2e-67 258.8 200 72.0
MD14G1226000 Malus domestica HOM05D005829 ORTHO05D007246 4.2e-67 258.5 202 70.3
Haze_18659 Corylus avellana HOM05D005829 ORTHO05D007246 2.2e-55 219.5 204 61.3
Cfa019789 Carpinus fangiana HOM05D005829 ORTHO05D007246 1.1e-54 217.2 205 60.5
CANSAT21G0600 Cannabis sativa HOM05D005829 ORTHO05D007246 5.0e-52 208.4 207 55.6
QL10p025073 Quercus lobata HOM05D005829 ORTHO05D007246 5.0e-52 208.4 216 54.6
CiPaw.15G129500 Carya illinoinensis HOM05D005829 ORTHO05D007246 9.4e-51 204.1 203 57.1
Sabra15G0075500 Salix brachista HOM05D005829 ORTHO05D007246 2.3e-49 199.5 210 55.7
PGR083G1885 Punica granatum HOM05D005829 ORTHO05D007246 5.1e-49 198.4 207 54.6
GSVIVG01008273001 Vitis vinifera HOM05D005829 ORTHO05D007246 1.5e-48 196.8 211 52.1
Manes.01G012500 Manihot esculenta HOM05D005829 ORTHO05D007246 2.0e-48 196.4 213 54.5
Lalb_Chr14g0371231 Lupinus albus HOM05D005829 ORTHO05D007246 5.7e-48 194.9 182 58.8
Potri.015G053800 Populus trichocarpa HOM05D005829 ORTHO05D007246 7.4e-48 194.5 210 53.3
arahy.Tifrunner.gnm1.ann1.K96EGP Arachis hypogaea HOM05D005829 ORTHO05D007246 1.3e-47 193.7 202 56.4
Dinv36156 Davidia involucrata HOM05D005829 ORTHO05D007246 2.2e-47 193.0 208 53.4
Eucgr.K02215 Eucalyptus grandis HOM05D005829 ORTHO05D007246 2.2e-47 193.0 175 60.0
TWI15G0782 Tripterygium wilfordii HOM05D005829 ORTHO05D007246 2.2e-47 193.0 197 56.9
Cpa.g.sc13.3 Carica papaya HOM05D005829 ORTHO05D007246 4.8e-47 191.8 205 58.5
Manes.05G145805 Manihot esculenta HOM05D005829 ORTHO05D007246 8.2e-47 191.0 203 55.7
ClCG06G014890 Citrullus lanatus HOM05D005829 ORTHO05D007246 1.8e-46 189.9 203 57.6
HanXRQChr10g0314971 Helianthus annuus HOM05D005829 ORTHO05D007246 3.4e-45 185.7 179 57.0
Duzib068G0473 Durio zibethinus HOM05D005829 ORTHO05D007246 1.0e-44 184.1 213 54.9
Duzib084G1006 Durio zibethinus HOM05D005829 ORTHO05D007246 2.2e-44 183.0 215 52.6
Cc04_g07210 Coffea canephora HOM05D005829 ORTHO05D007246 8.5e-44 181.0 186 55.4
Ciclev10022208m.g Citrus clementina HOM05D005829 ORTHO05D007246 4.2e-43 178.7 220 50.5
Aqoxy3G00323 Aquilegia oxysepala HOM05D005829 ORTHO05D007246 5.5e-43 178.3 199 50.3
arahy.Tifrunner.gnm1.ann1.SID7TX Arachis hypogaea HOM05D005829 ORTHO05D007246 9.4e-43 177.6 232 48.7
Lsat_1_v5_gn_8_146520 Lactuca sativa HOM05D005829 ORTHO05D007246 1.6e-42 176.8 178 53.9
Hund02393 Selenicereus undatus HOM05D005829 ORTHO05D007246 1.0e-41 174.1 199 51.3
TAR629G3023 Trochodendron aralioides HOM05D005829 ORTHO05D007246 1.4e-41 173.7 158 57.0
MELO3C017300.2 Cucumis melo HOM05D005829 ORTHO05D007246 2.3e-41 172.9 204 53.9
FAN14G0369 Fragaria x ananassa HOM05D005829 ORTHO05D007246 2.3e-41 172.9 84 97.6
CsaV3_1G003750 Cucumis sativus L. HOM05D005829 ORTHO05D007246 3.0e-41 172.6 201 53.7
Thecc.03G033800 Theobroma cacao HOM05D005829 ORTHO05D007246 3.9e-41 172.2 213 51.6
Atru.chr9.821 Acer truncatum HOM05D005829 ORTHO05D007246 5.2e-41 171.8 210 53.8
Gohir.D09G173000 Gossypium hirsutum HOM05D005829 ORTHO05D007246 2.0e-40 169.9 213 52.1
Sc12g0006790 Simmondsia chinensis HOM05D005829 ORTHO05D007246 2.0e-40 169.9 200 47.5
CSS0021100 Camellia sinensis var. sinensis HOM05D005829 ORTHO05D007246 4.4e-40 168.7 219 49.3
PSO478G3740 Papaver somniferum HOM05D005829 ORTHO05D007246 4.4e-40 168.7 193 50.3
Gorai.006G194900 Gossypium raimondii HOM05D005829 ORTHO05D007246 5.7e-40 168.3 213 51.6
PSO017G1947 Papaver somniferum HOM05D005829 ORTHO05D007246 7.4e-40 167.9 193 50.8
Oeu046995.1 Olea europaea HOM05D005829 ORTHO05D007246 1.7e-39 166.8 196 49.0
ATR0665G268 Amborella trichopoda HOM05D005829 ORTHO05D007246 2.2e-39 166.4 154 59.7
Gohir.A09G177500 Gossypium hirsutum HOM05D005829 ORTHO05D007246 2.2e-39 166.4 209 50.2
Nitab4.5_0010801g0020 Nicotiana tabacum HOM05D005829 ORTHO05D007246 8.2e-39 164.5 193 51.8
Nitab4.5_0011561g0030 Nicotiana tabacum HOM05D005829 ORTHO05D007246 1.4e-38 163.7 191 52.4
Potri.015G054100 Populus trichocarpa HOM05D005829 ORTHO05D007246 1.8e-38 163.3 130 63.1
CAN.G423.7 Capsicum annuum HOM05D005829 ORTHO05D007246 2.4e-38 162.9 168 55.4
MSTRG.11323 Avicennia marina HOM05D005829 ORTHO05D007246 3.1e-38 162.5 193 48.7
PGSC0003DMG400004051 Solanum tuberosum HOM05D005829 ORTHO05D007246 3.1e-38 162.5 186 48.4
ECA234G2972 Erigeron canadensis HOM05D005829 ORTHO05D007246 7.0e-38 161.4 188 52.1
Sopen06g026440 Solanum pennellii HOM05D005829 ORTHO05D007246 7.0e-38 161.4 186 48.9
Solyc06g069170.4 Solanum lycopersicum HOM05D005829 ORTHO05D007246 1.2e-37 160.6 186 48.4
Oeu006380.1 Olea europaea HOM05D005829 ORTHO05D007246 4.5e-37 158.7 195 46.7
Migut.I00369 Erythranthe guttata HOM05D005829 ORTHO05D007246 7.7e-37 157.9 138 58.0
Rhsim13G0208500 Rhododendron simsii HOM05D005829 ORTHO05D007246 1.7e-36 156.8 234 47.9
Actinidia06971 Actinidia chinensis HOM05D005829 ORTHO05D007246 2.2e-36 156.4 205 49.8
Sed0000228 Sechium edule HOM05D005829 ORTHO05D007246 5.0e-36 155.2 168 56.0
unitig_749.g13417 Utricularia gibba HOM05D005829 ORTHO05D007246 1.9e-35 153.3 116 62.1
EL10Ac5g11432 Beta vulgaris HOM05D005829 ORTHO05D007246 2.5e-35 152.9 207 48.8
CARHR067000 Cardamine hirsuta HOM05D005829 ORTHO05D007246 3.2e-35 152.5 217 47.9
Peaxi162Scf00013g00945 Petunia axillaris HOM05D005829 ORTHO05D007246 3.2e-35 152.5 193 48.7
THA.LOC104813901 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 1.2e-34 150.6 211 46.9
Lj2g0004175 Lotus japonicus HOM05D005829 ORTHO05D007246 1.6e-34 150.2 197 51.8
CDE11G0392 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 2.7e-34 149.4 153 51.0
BcaB03g15734 Brassica carinata HOM05D005829 ORTHO05D007246 6.1e-34 148.3 215 47.4
AL2G33720 Arabidopsis lyrata HOM05D005829 ORTHO05D007246 1.0e-33 147.5 218 47.2
Carub.0002s2066 Capsella rubella HOM05D005829 ORTHO05D007246 2.3e-33 146.4 221 45.2
Nn1g06955 Nelumbo nucifera HOM05D005829 ORTHO05D007246 5.2e-33 145.2 178 52.8
CDE05G0659 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 6.7e-33 144.8 153 49.0
DCAR_023199 Daucus carota HOM05D005829 ORTHO05D007246 6.7e-33 144.8 152 53.9
Ah.11g045030 Amaranthus hybridus HOM05D005829 ORTHO05D007246 2.6e-32 142.9 207 43.0
vmacro04041 Vaccinium macrocarpon HOM05D005829 ORTHO05D007246 3.3e-32 142.5 252 42.1
Aa31LG4G4200 Aethionema arabicum HOM05D005829 ORTHO05D007246 1.3e-31 140.6 217 45.2
Sp5g29090 Schrenkiella parvula HOM05D005829 ORTHO05D007246 2.2e-31 139.8 217 46.5
BcaC08g45615 Brassica carinata HOM05D005829 ORTHO05D007246 2.8e-31 139.4 216 44.4
A02p18930 Brassica napus HOM05D005829 ORTHO05D007246 3.7e-31 139.0 216 43.1
C06p33760 Brassica napus HOM05D005829 ORTHO05D007246 3.7e-31 139.0 216 50.5
Thhalv10019131m.g Eutrema salsugineum HOM05D005829 ORTHO05D007246 3.7e-31 139.0 218 46.3
BraA02t06935Z Brassica rapa HOM05D005829 ORTHO05D007246 4.8e-31 138.7 216 44.0
BcaB05g24816 Brassica carinata HOM05D005829 ORTHO05D007246 6.3e-31 138.3 219 44.7
BcaB05g24818 Brassica carinata HOM05D005829 ORTHO05D007246 6.3e-31 138.3 219 44.7
BcaC03g15467 Brassica carinata HOM05D005829 ORTHO05D007246 8.2e-31 137.9 216 44.0
C02p31470 Brassica napus HOM05D005829 ORTHO05D007246 8.2e-31 137.9 216 44.0
BolC2t09178H Brassica oleracea HOM05D005829 ORTHO05D007246 8.2e-31 137.9 216 44.0
Ca_25501_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 8.2e-31 137.9 195 46.2
HPP92_013263 Vanilla planifolia HOM05D005829 ORTHO05D007246 1.1e-30 137.5 171 48.0
BolC6t38490H Brassica oleracea HOM05D005829 ORTHO05D007246 4.1e-30 135.6 216 50.0
HPP92_013214 Vanilla planifolia HOM05D005829 ORTHO05D007246 5.3e-30 135.2 175 47.4
Os03g0710600 Oryza sativa ssp. japonica HOM05D005829 ORTHO05D007246 1.2e-29 134.0 204 42.2
BcaC09g48855 Brassica carinata HOM05D005829 ORTHO05D007246 3.5e-29 132.5 114 61.4
C01p45190 Brassica napus HOM05D005829 ORTHO05D007246 3.5e-29 132.5 114 61.4
BolC1t04492H Brassica oleracea HOM05D005829 ORTHO05D007246 3.5e-29 132.5 114 61.4
A07p29590 Brassica napus HOM05D005829 ORTHO05D007246 5.9e-29 131.7 217 42.9
SGA_v2.0_scaffold25G10988 Striga asiatica HOM05D005829 ORTHO05D007246 7.7e-29 131.3 216 39.8
AT1G73885 Arabidopsis thaliana HOM05D005829 ORTHO05D007246 5.0e-28 128.6 192 46.4
BraA07t30600Z Brassica rapa HOM05D005829 ORTHO05D007246 6.5e-28 128.3 215 45.6
SEGI_06072 Sequoiadendron giganteum HOM05D005829 ORTHO05D007246 6.5e-28 128.3 99 61.6
Gohir.A08G094610 Gossypium hirsutum HOM05D005829 ORTHO05D007246 2.5e-27 126.3 178 45.5
Ca_00264_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 5.5e-27 125.2 188 43.6
Zm00001eb054790 Zea mays HOM05D005829 ORTHO05D007246 7.2e-27 124.8 158 49.4
Zm00001eb216440 Zea mays HOM05D005829 ORTHO05D007246 3.6e-26 122.5 189 45.5
BcaC03g15466 Brassica carinata HOM05D005829 ORTHO05D007246 1.4e-25 120.6 202 42.6
Medtr6g084620 Medicago truncatula HOM05D005829 ORTHO05D007246 1.4e-25 120.6 195 44.6
AagrBONN_evm.TU.Sc2ySwM_228.1174 Anthoceros agrestis HOM05D005829 ORTHO05D007246 1.8e-22 110.2 84 61.9
TPR.G35237 Trifolium pratense HOM05D005829 ORTHO05D007246 5.4e-22 108.6 100 56.0
AagrBONN_evm.TU.Sc2ySwM_228.2224 Anthoceros agrestis HOM05D005829 ORTHO05D007246 7.0e-22 108.2 84 60.7
Nn3g17806 Nelumbo nucifera HOM05D005829 ORTHO05D007246 5.2e-17 92.0 96 49.0
COL.COLO4_04672 Corchorus olitorius HOM05D005829 ORTHO05D007246 1.7e-15 87.0 156 42.9
AUR62025855 Chenopodium quinoa HOM05D005829 ORTHO05D007246 1.1e-14 84.3 58 70.7
AUR62029856 Chenopodium quinoa HOM05D005829 ORTHO05D007246 1.1e-14 84.3 58 70.7
Pp3c4_12650 Physcomitrium patens HOM05D005829 ORTHO05D007246 1.1e-14 84.3 87 48.3
Pp3c4_12780 Physcomitrium patens HOM05D005829 ORTHO05D007246 1.1e-14 84.3 87 48.3
Mapoly0028s0124 Marchantia polymorpha HOM05D005829 ORTHO05D007246 1.8e-14 83.6 83 48.2
THA.LOC104813291 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 3.1e-14 82.8 69 68.1
FAN22G1271 Fragaria x ananassa HOM05D038641 ORTHO05D035590 1.7e-12 77.0 65 70.8
Actinidia24460 Actinidia chinensis HOM05D005829 ORTHO05D007246 8.6e-12 74.7 70 54.3
Phvul.004G158500 Phaseolus vulgaris HOM05D005829 ORTHO05D007246 2.5e-11 73.2 195 29.7
Glyma.07G090700 Glycine max HOM05D005829 ORTHO05D007246 3.1e-09 66.2 105 39.0
CBR_g29305 Chara braunii HOM05D005829 ORTHO05D007246 2.6e-08 63.2 36 72.2
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 4.4e-08 62.4 163 28.2
Glyma.09G185300 Glycine max HOM05D005829 ORTHO05D007246 2.9e-07 59.7 195 29.7
SMO241G0040 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 5.4e-06 55.5 99 36.4
FvH4_6g15641 Fragaria vesca HOM05D038641 ORTHO05D035590 9.2e-06 54.7 28 96.4
SMO232G0029 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 9.2e-06 54.7 93 35.5


User provided reference genes

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