Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g11000 Fragaria vesca HOM05D007016 ORTHO05D008847 3.4e-141 505.0 253 100.0
FAN18G1330 Fragaria x ananassa HOM05D007016 ORTHO05D008847 1.6e-135 486.1 291 86.9
FAN04G1313 Fragaria x ananassa HOM05D007016 ORTHO05D008847 1.5e-133 479.6 253 96.0
FAN08G2008 Fragaria x ananassa HOM05D007016 ORTHO05D008847 5.8e-133 477.6 254 95.7
FAN13G1076 Fragaria x ananassa HOM05D007016 ORTHO05D008847 1.6e-122 443.0 253 90.9
RcHm_v2.0_Chr7g0186811 Rosa chinensis HOM05D007016 ORTHO05D008847 1.2e-117 426.8 253 85.4
MD14G1125100 Malus domestica HOM05D007016 ORTHO05D008847 4.5e-85 318.5 255 67.1
MD06G1117700 Malus domestica HOM05D007016 ORTHO05D008847 1.2e-82 310.5 229 69.9
Prupe.5G128800 Prunus persica HOM05D007016 ORTHO05D008847 1.1e-80 303.9 258 67.8
TAR375G0929 Trochodendron aralioides HOM05D007016 ORTHO05D008847 1.2e-69 267.3 206 68.4
Cfa011932 Carpinus fangiana HOM05D007016 ORTHO05D008847 3.5e-69 265.8 256 57.4
Haze_14080 Corylus avellana HOM05D007016 ORTHO05D008847 3.5e-69 265.8 227 60.8
Dinv12013 Davidia involucrata HOM05D007016 ORTHO05D008847 1.0e-68 264.2 253 58.5
Dinv34693 Davidia involucrata HOM05D007016 ORTHO05D008847 1.0e-68 264.2 253 58.1
vmacro11507 Vaccinium macrocarpon HOM05D007016 ORTHO05D008847 1.1e-67 260.8 235 59.1
GSVIVG01019642001 Vitis vinifera HOM05D007016 ORTHO05D008847 1.5e-67 260.4 241 57.7
Rhsim02G0251600 Rhododendron simsii HOM05D007016 ORTHO05D008847 2.5e-67 259.6 235 60.0
Actinidia22202 Actinidia chinensis HOM05D007016 ORTHO05D008847 2.1e-66 256.5 236 58.9
PGR031G1249 Punica granatum HOM05D007016 ORTHO05D008847 3.6e-66 255.8 242 58.3
Eucgr.D01686 Eucalyptus grandis HOM05D007016 ORTHO05D008847 3.0e-65 252.7 257 58.4
CiPaw.12G078100 Carya illinoinensis HOM05D007016 ORTHO05D008847 1.2e-64 250.8 243 58.0
Thecc.03G221900 Theobroma cacao HOM05D007016 ORTHO05D008847 3.3e-64 249.2 250 58.0
Glyma.01G230300 Glycine max HOM05D007016 ORTHO05D008847 4.4e-64 248.8 206 63.1
VMungo1215G3083 Vigna mungo HOM05D007016 ORTHO05D008847 4.1e-62 242.3 237 57.0
Ciclev10021806m.g Citrus clementina HOM05D007016 ORTHO05D008847 9.1e-62 241.1 256 55.5
Phvul.002G036800 Phaseolus vulgaris HOM05D007016 ORTHO05D008847 9.1e-62 241.1 241 54.8
TWI81G0911 Tripterygium wilfordii HOM05D007016 ORTHO05D008847 1.6e-61 240.4 218 57.8
Duzib084G0025 Durio zibethinus HOM05D000458 ORTHO05D000951 2.0e-61 240.0 208 62.5
QL02p028324 Quercus lobata HOM05D007016 ORTHO05D008847 2.0e-61 240.0 212 59.9
Gorai.003G076500 Gossypium raimondii HOM05D007016 ORTHO05D008847 2.7e-61 239.6 205 61.0
TWI15G0571 Tripterygium wilfordii HOM05D007016 ORTHO05D008847 3.8e-60 235.7 248 54.4
Aqoxy5G04260 Aquilegia oxysepala HOM05D007016 ORTHO05D008847 1.5e-59 233.8 246 55.3
Duzib205G1809 Durio zibethinus HOM05D007016 ORTHO05D008847 1.5e-59 233.8 232 56.9
MBI04_g33411_MAGBIO Magnolia biondii HOM05D007016 ORTHO05D008847 2.5e-59 233.0 238 52.9
Haze_09164 Corylus avellana HOM05D007016 ORTHO05D008847 3.2e-59 232.6 253 53.0
Oeu022037.1 Olea europaea HOM05D007016 ORTHO05D008847 9.4e-59 231.1 211 57.3
Manes.02G003500 Manihot esculenta HOM05D007016 ORTHO05D008847 6.1e-58 228.4 251 53.4
Potri.003G146100 Populus trichocarpa HOM05D007016 ORTHO05D008847 6.1e-58 228.4 247 54.3
Atru.chr9.1899 Acer truncatum HOM05D007016 ORTHO05D008847 1.0e-57 227.6 203 59.6
Haze_09158 Corylus avellana HOM05D007016 ORTHO05D008847 1.8e-57 226.9 253 54.2
arahy.Tifrunner.gnm1.ann1.6JL1AX Arachis hypogaea HOM05D007016 ORTHO05D008847 3.0e-57 226.1 204 58.8
CsaV3_5G001730 Cucumis sativus L. HOM05D007016 ORTHO05D008847 3.0e-57 226.1 246 52.0
Sabra03G0106200 Salix brachista HOM05D007016 ORTHO05D008847 3.0e-57 226.1 257 51.4
Cc08_g16690 Coffea canephora HOM05D007016 ORTHO05D008847 6.8e-57 224.9 253 51.4
Potri.001G084600 Populus trichocarpa HOM05D007016 ORTHO05D008847 6.8e-57 224.9 210 59.0
arahy.Tifrunner.gnm1.ann1.CXQL6Y Arachis hypogaea HOM05D007016 ORTHO05D008847 1.2e-56 224.2 204 58.3
COL.COLO4_10789 Corchorus olitorius HOM05D000458 ORTHO05D000951 2.6e-56 223.0 217 57.6
ClCG01G001570 Citrullus lanatus HOM05D007016 ORTHO05D008847 1.3e-55 220.7 244 52.0
Sed0027229 Sechium edule HOM05D007016 ORTHO05D008847 1.7e-55 220.3 250 50.4
MELO3C005780.2 Cucumis melo HOM05D007016 ORTHO05D008847 4.1e-54 215.7 240 51.7
Ca_24467_v3 Cicer arietinum L. HOM05D007016 ORTHO05D008847 5.4e-54 215.3 208 58.7
Medtr5g008220 Medicago truncatula HOM05D007016 ORTHO05D008847 1.2e-53 214.2 200 57.0
Nitab4.5_0004251g0050 Nicotiana tabacum HOM05D007016 ORTHO05D008847 2.7e-53 213.0 254 48.4
Migut.O00796 Erythranthe guttata HOM05D007016 ORTHO05D008847 4.5e-53 212.2 238 52.9
HanXRQChr06g0166831 Helianthus annuus HOM05D007016 ORTHO05D008847 1.7e-52 210.3 202 54.5
ECA246G5308 Erigeron canadensis HOM05D007016 ORTHO05D008847 2.3e-52 209.9 212 51.9
LjContig00222g0018079 Lotus japonicus HOM05D007016 ORTHO05D008847 2.3e-52 209.9 236 50.4
SGA_v2.0_scaffold314G48366 Striga asiatica HOM05D007016 ORTHO05D008847 2.3e-52 209.9 207 57.5
AUR62007045 Chenopodium quinoa HOM05D007016 ORTHO05D008847 2.9e-52 209.5 206 56.3
Gohir.A02G097900 Gossypium hirsutum HOM05D007016 ORTHO05D008847 5.0e-52 208.8 250 50.0
Peaxi162Scf00074g00350 Petunia axillaris HOM05D000458 ORTHO05D000951 4.2e-51 205.7 203 54.2
Lsat_1_v5_gn_3_13941 Lactuca sativa HOM05D007016 ORTHO05D008847 5.5e-51 205.3 245 47.3
Cpa.g.sc175.19 Carica papaya HOM05D007016 ORTHO05D008847 7.2e-51 204.9 186 59.7
EL10Ac5g12439 Beta vulgaris HOM05D007016 ORTHO05D008847 1.2e-50 204.1 201 56.7
Sc01g0010620 Simmondsia chinensis HOM05D007016 ORTHO05D008847 1.2e-50 204.1 247 49.8
ATR0620G109 Amborella trichopoda HOM05D007016 ORTHO05D008847 1.6e-50 203.8 242 48.3
Nn3g18888 Nelumbo nucifera HOM05D007016 ORTHO05D008847 2.1e-50 203.4 283 45.9
HPP92_022341 Vanilla planifolia HOM05D007016 ORTHO05D008847 2.8e-50 203.0 178 57.3
HPP92_022355 Vanilla planifolia HOM05D007016 ORTHO05D008847 2.8e-50 203.0 178 57.3
DCAR_006538 Daucus carota HOM05D007016 ORTHO05D008847 3.6e-50 202.6 203 56.7
PSO339G2192 Papaver somniferum HOM05D007016 ORTHO05D008847 6.1e-50 201.8 258 49.2
PSO339G4063 Papaver somniferum HOM05D007016 ORTHO05D008847 6.1e-50 201.8 258 49.6
Gohir.D03G085700 Gossypium hirsutum HOM05D007016 ORTHO05D008847 8.9e-49 198.0 205 53.7
TPR.G38026 Trifolium pratense HOM05D007016 ORTHO05D008847 8.9e-49 198.0 182 58.2
Ah.07g197890 Amaranthus hybridus HOM05D007016 ORTHO05D008847 9.8e-48 194.5 252 45.6
A07p21030 Brassica napus HOM05D003273 ORTHO05D004023 1.3e-47 194.1 194 55.7
HanXRQChr17g0534751 Helianthus annuus HOM05D007016 ORTHO05D008847 3.7e-47 192.6 131 68.7
BraA07t29790Z Brassica rapa HOM05D003273 ORTHO05D004023 8.3e-47 191.4 198 53.5
Thhalv10027936m.g Eutrema salsugineum HOM05D007016 ORTHO05D008847 1.1e-46 191.0 164 58.5
THA.LOC104809306 Tarenaya hassleriana HOM05D007016 ORTHO05D008847 5.4e-46 188.7 210 51.4
Zm00001eb428160 Zea mays HOM05D007016 ORTHO05D008847 1.6e-45 187.2 202 50.0
Lalb_Chr09g0320381 Lupinus albus HOM05D007016 ORTHO05D008847 2.0e-45 186.8 230 46.5
Nitab4.5_0007063g0030 Nicotiana tabacum HOM05D007016 ORTHO05D008847 4.5e-45 185.7 245 45.3
Sp7g00170 Schrenkiella parvula HOM05D007016 ORTHO05D008847 4.5e-45 185.7 203 52.2
BcaC02g08900 Brassica carinata HOM05D003273 ORTHO05D004023 5.9e-45 185.3 155 59.4
Carub.0007s3342 Capsella rubella HOM05D007016 ORTHO05D008847 7.8e-45 184.9 152 61.2
BcaB06g27684 Brassica carinata HOM05D003273 ORTHO05D004023 1.3e-44 184.1 174 54.0
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 1.7e-44 183.7 174 54.0
AL7G47260 Arabidopsis lyrata HOM05D007016 ORTHO05D008847 2.3e-44 183.3 181 56.4
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 2.3e-44 183.3 174 54.0
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 5.0e-44 182.2 173 53.8
BolC4t26521H Brassica oleracea HOM05D003273 ORTHO05D004023 5.0e-44 182.2 173 53.8
SEGI_36842 Sequoiadendron giganteum HOM05D007016 ORTHO05D008847 8.6e-44 181.4 154 55.8
CARHR212600 Cardamine hirsuta HOM05D007016 ORTHO05D008847 1.9e-43 180.3 193 52.3
MD16G1274000 Malus domestica HOM05D007016 ORTHO05D008847 2.5e-43 179.9 163 58.9
Os04g0585600 Oryza sativa ssp. japonica HOM05D007016 ORTHO05D008847 2.5e-43 179.9 198 48.5
Lsat_1_v5_gn_3_14061 Lactuca sativa HOM05D007016 ORTHO05D008847 3.3e-43 179.5 229 45.4
AT5G41960 Arabidopsis thaliana HOM05D007016 ORTHO05D008847 7.3e-43 178.3 166 57.2
BcaC08g44572 Brassica carinata HOM05D003273 ORTHO05D004023 9.5e-43 177.9 181 54.7
Sopen08g031240 Solanum pennellii HOM05D007016 ORTHO05D008847 1.6e-42 177.2 256 45.3
PGSC0003DMG400012122 Solanum tuberosum HOM05D007016 ORTHO05D008847 1.6e-42 177.2 258 45.3
Aa31LG9G230 Aethionema arabicum HOM05D007016 ORTHO05D008847 1.0e-41 174.5 191 51.8
C06p20380 Brassica napus HOM05D003273 ORTHO05D004023 1.0e-41 174.5 184 53.3
CAN.G567.80 Capsicum annuum HOM05D007016 ORTHO05D008847 1.4e-41 174.1 180 53.9
Solyc08g083030.4 Solanum lycopersicum HOM05D007016 ORTHO05D008847 1.4e-41 174.1 256 45.3
MSTRG.15575 Avicennia marina HOM05D007016 ORTHO05D008847 5.2e-41 172.2 230 45.2
unitig_62.g23644 Utricularia gibba HOM05D007016 ORTHO05D008847 1.5e-40 170.6 201 48.3
Pp3c14_22240 Physcomitrium patens HOM05D007016 ORTHO05D008847 1.3e-36 157.5 125 58.4
AUR62019909 Chenopodium quinoa HOM05D007016 ORTHO05D008847 1.7e-36 157.1 253 43.1
Mapoly0080s0071 Marchantia polymorpha HOM05D007016 ORTHO05D008847 9.5e-35 151.4 128 53.9
SMO164G0130 Selaginella moellendorffii HOM05D007016 ORTHO05D008847 8.9e-33 144.8 123 54.5
AagrBONN_evm.TU.Sc2ySwM_117.1459 Anthoceros agrestis HOM05D007016 ORTHO05D008847 1.5e-32 144.1 117 59.0
CDE07G1000 Ceratophyllum demersum HOM05D007016 ORTHO05D008847 1.7e-31 140.6 141 50.4
CSS0028177 Camellia sinensis var. sinensis HOM05D007016 ORTHO05D008847 2.9e-31 139.8 236 42.4
BolC6t37216H Brassica oleracea HOM05D007016 ORTHO05D008847 4.9e-31 139.0 184 46.2
Nitab4.5_0000051g0070 Nicotiana tabacum HOM05D007016 ORTHO05D008847 3.3e-27 126.3 121 55.4
Psat2g187480 Pisum sativum HOM05D007016 ORTHO05D008847 2.1e-26 123.6 90 65.6
arahy.Tifrunner.gnm1.ann1.PIY4C5 Arachis hypogaea HOM05D007016 ORTHO05D008847 3.6e-26 122.9 83 68.7
CBR_g26222 Chara braunii HOM05D007016 ORTHO05D008847 1.4e-25 120.9 229 34.1
SEGI_07436 Sequoiadendron giganteum HOM05D007016 ORTHO05D008847 1.2e-24 117.9 100 56.0
CANSAT21G1603 Cannabis sativa HOM05D007016 ORTHO05D008847 1.9e-22 110.5 263 35.4
arahy.Tifrunner.gnm1.ann1.HM96ZH Arachis hypogaea HOM05D007016 ORTHO05D008847 3.6e-18 96.3 116 50.0
Hund14199 Selenicereus undatus HOM05D007016 ORTHO05D008847 8.1e-18 95.1 110 50.9


User provided reference genes

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