Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g10930 Fragaria vesca HOM05D005517 ORTHO05D006760 1.0e-29 132.9 72 100.0
FAN08G0577 Fragaria x ananassa HOM05D005517 ORTHO05D006760 1.0e-29 132.9 72 100.0
FAN13G3313 Fragaria x ananassa HOM05D005517 ORTHO05D006760 1.0e-29 132.9 72 100.0
FAN18G2496 Fragaria x ananassa HOM05D005517 ORTHO05D006760 1.0e-29 132.9 72 100.0
RcHm_v2.0_Chr1g0371371 Rosa chinensis HOM05D005517 ORTHO05D006760 5.1e-26 120.6 72 93.1
RcHm_v2.0_Chr7g0186891 Rosa chinensis HOM05D005517 ORTHO05D006760 5.1e-26 120.6 72 93.1
Glyma.19G093900 Glycine max HOM05D005517 ORTHO05D006760 7.6e-22 106.7 80 78.8
MD06G1118400 Malus domestica HOM05D005517 ORTHO05D006760 5.0e-21 104.0 72 80.6
CiPaw.03G057500 Carya illinoinensis HOM05D005517 ORTHO05D006760 6.5e-21 103.6 80 77.5
CsaV3_3G026940 Cucumis sativus L. HOM05D005517 ORTHO05D006760 8.4e-21 103.2 75 84.0
Lj1g0000511 Lotus japonicus HOM05D005517 ORTHO05D006760 8.4e-21 103.2 79 79.7
Ciclev10017370m.g Citrus clementina HOM05D005517 ORTHO05D006760 1.9e-20 102.1 73 80.8
Prupe.5G129500 Prunus persica HOM05D005517 ORTHO05D006760 2.5e-20 101.7 75 81.3
Glyma.16G054600 Glycine max HOM05D005517 ORTHO05D006760 3.2e-20 101.3 76 73.7
MD14G1126500 Malus domestica HOM05D005517 ORTHO05D006760 5.5e-20 100.5 72 75.0
Migut.F00052 Erythranthe guttata HOM05D005517 ORTHO05D006760 9.3e-20 99.8 74 78.4
Phvul.001G091300 Phaseolus vulgaris HOM05D005517 ORTHO05D006760 9.3e-20 99.8 80 73.8
GSVIVG01028670001 Vitis vinifera HOM05D005517 ORTHO05D006760 9.3e-20 99.8 76 75.0
Atru.chr6.2589 Acer truncatum HOM05D005517 ORTHO05D006760 1.2e-19 99.4 80 77.5
TWI74G0054 Tripterygium wilfordii HOM05D005517 ORTHO05D006760 1.6e-19 99.0 79 74.7
TWI74G0227 Tripterygium wilfordii HOM05D005517 ORTHO05D006760 1.6e-19 99.0 79 74.7
Medtr3g007670 Medicago truncatula HOM05D005517 ORTHO05D006760 3.5e-19 97.8 77 77.9
Lalb_Chr16g0380111 Lupinus albus HOM05D005517 ORTHO05D006760 4.6e-19 97.4 78 76.9
Potri.001G328100 Populus trichocarpa HOM05D005517 ORTHO05D006760 6.1e-19 97.1 80 72.5
MELO3C014894.2 Cucumis melo HOM05D005517 ORTHO05D006760 7.9e-19 96.7 75 80.0
Gohir.A07G229900 Gossypium hirsutum HOM05D005517 ORTHO05D006760 7.9e-19 96.7 68 82.4
Gohir.D07G237100 Gossypium hirsutum HOM05D005517 ORTHO05D006760 7.9e-19 96.7 68 82.4
Gorai.001G273000 Gossypium raimondii HOM05D005517 ORTHO05D006760 7.9e-19 96.7 68 82.4
TAR371G1004 Trochodendron aralioides HOM05D005517 ORTHO05D006760 7.9e-19 96.7 75 76.0
Duzib264G0094 Durio zibethinus HOM05D005517 ORTHO05D006760 1.0e-18 96.3 69 79.7
Thecc.04G039500 Theobroma cacao HOM05D005517 ORTHO05D006760 1.0e-18 96.3 69 79.7
arahy.Tifrunner.gnm1.ann1.3828X0 Arachis hypogaea HOM05D005517 ORTHO05D006760 1.8e-18 95.5 75 73.3
CAN.G473.115 Capsicum annuum HOM05D005517 ORTHO05D006760 1.8e-18 95.5 74 75.7
TAR629G2363 Trochodendron aralioides HOM05D005517 ORTHO05D006760 1.8e-18 95.5 80 72.5
CANSAT64G1159 Cannabis sativa HOM05D005517 ORTHO05D006760 2.3e-18 95.1 80 75.0
CARHR199240 Cardamine hirsuta HOM05D005517 ORTHO05D006760 2.3e-18 95.1 73 74.0
Cpa.g.sc70.124 Carica papaya HOM05D005517 ORTHO05D006760 2.3e-18 95.1 73 75.3
COL.COLO4_13282 Corchorus olitorius HOM05D005517 ORTHO05D006760 2.3e-18 95.1 68 80.9
Manes.15G162502 Manihot esculenta HOM05D005517 ORTHO05D006760 2.3e-18 95.1 80 72.5
Potri.017G066388 Populus trichocarpa HOM05D005517 ORTHO05D006760 3.0e-18 94.7 73 74.0
Aa31LG11G14910 Aethionema arabicum HOM05D005517 ORTHO05D006760 3.9e-18 94.4 73 74.0
ClCG05G013610 Citrullus lanatus HOM05D005517 ORTHO05D006760 3.9e-18 94.4 79 74.7
Dinv33325 Davidia involucrata HOM05D005517 ORTHO05D006760 3.9e-18 94.4 74 71.6
CSS0012820 Camellia sinensis var. sinensis HOM05D005517 ORTHO05D006760 5.1e-18 94.0 74 75.7
Carub.0006s1230 Capsella rubella HOM05D005517 ORTHO05D006760 5.1e-18 94.0 74 70.3
Ca_26962_v3 Cicer arietinum L. HOM05D005517 ORTHO05D006760 5.1e-18 94.0 78 76.9
Psat5g229880 Pisum sativum HOM05D005517 ORTHO05D006760 6.7e-18 93.6 75 73.3
Sabra17G0058600 Salix brachista HOM05D005517 ORTHO05D006760 6.7e-18 93.6 73 71.2
BcaB01g06344 Brassica carinata HOM05D005517 ORTHO05D006760 8.7e-18 93.2 73 71.2
Duzib187G1036 Durio zibethinus HOM05D005517 ORTHO05D006760 8.7e-18 93.2 69 76.8
Peaxi162Scf00420g00633 Petunia axillaris HOM05D005517 ORTHO05D006760 1.1e-17 92.8 74 70.3
THA.LOC104803813 Tarenaya hassleriana HOM05D005517 ORTHO05D006760 1.1e-17 92.8 73 69.9
Cc10_g16370 Coffea canephora HOM05D005517 ORTHO05D006760 1.5e-17 92.4 74 74.3
AT5G14105 Arabidopsis thaliana HOM05D005517 ORTHO05D006760 1.9e-17 92.0 74 70.3
BcaC04g19059 Brassica carinata HOM05D005517 ORTHO05D006760 1.9e-17 92.0 73 68.5
C09p63000 Brassica napus HOM05D005517 ORTHO05D006760 1.9e-17 92.0 73 68.5
BolC9t59138H Brassica oleracea HOM05D005517 ORTHO05D006760 1.9e-17 92.0 73 68.5
Os05g0517800 Oryza sativa ssp. japonica HOM05D005517 ORTHO05D006760 1.9e-17 92.0 80 68.8
A02p02340 Brassica napus HOM05D005517 ORTHO05D006760 2.5e-17 91.7 73 69.9
BraA02t05205Z Brassica rapa HOM05D005517 ORTHO05D006760 2.5e-17 91.7 73 69.9
CiPaw.04G038900 Carya illinoinensis HOM05D005517 ORTHO05D006760 2.5e-17 91.7 69 75.4
Medtr7g028755 Medicago truncatula HOM05D005517 ORTHO05D006760 2.5e-17 91.7 79 70.9
BcaB08g36959 Brassica carinata HOM05D005517 ORTHO05D006760 3.3e-17 91.3 73 68.5
Duzib147G1371 Durio zibethinus HOM05D005517 ORTHO05D006760 3.3e-17 91.3 69 78.3
Eucgr.H04420 Eucalyptus grandis HOM05D005517 ORTHO05D006760 3.3e-17 91.3 79 73.4
Nn3g16415 Nelumbo nucifera HOM05D005517 ORTHO05D006760 3.3e-17 91.3 76 71.1
A10p24320 Brassica napus HOM05D005517 ORTHO05D006760 4.3e-17 90.9 73 67.1
BraA10t44498Z Brassica rapa HOM05D005517 ORTHO05D006760 4.3e-17 90.9 73 67.1
Lalb_Chr05g0214841 Lupinus albus HOM05D005517 ORTHO05D006760 4.3e-17 90.9 74 73.0
Sopen04g004730 Solanum pennellii HOM05D005517 ORTHO05D006760 4.3e-17 90.9 74 73.0
PGSC0003DMG400032535 Solanum tuberosum HOM05D005517 ORTHO05D006760 4.3e-17 90.9 74 73.0
Aqoxy1G01489 Aquilegia oxysepala HOM05D005517 ORTHO05D006760 5.7e-17 90.5 80 67.5
HanXRQChr02g0035131 Helianthus annuus HOM05D005517 ORTHO05D006760 5.7e-17 90.5 71 73.2
Oeu063019.1 Olea europaea HOM05D005517 ORTHO05D006760 5.7e-17 90.5 74 74.3
PSO210G3561 Papaver somniferum HOM05D005517 ORTHO05D006760 5.7e-17 90.5 74 68.9
HPP92_000894 Vanilla planifolia HOM05D005517 ORTHO05D006760 5.7e-17 90.5 75 69.3
Dinv25651 Davidia involucrata HOM05D005517 ORTHO05D006760 7.4e-17 90.1 74 70.3
TPR.G30072 Trifolium pratense HOM05D005517 ORTHO05D006760 7.4e-17 90.1 75 72.0
Gohir.D04G075800 Gossypium hirsutum HOM05D005517 ORTHO05D006760 9.7e-17 89.7 69 72.5
PGR142G3118 Punica granatum HOM05D005517 ORTHO05D006760 9.7e-17 89.7 77 74.0
Sopen02g038880 Solanum pennellii HOM05D005517 ORTHO05D006760 9.7e-17 89.7 74 73.0
PGSC0003DMG402020250 Solanum tuberosum HOM05D005517 ORTHO05D006760 9.7e-17 89.7 74 73.0
MBI06_g06692_MAGBIO Magnolia biondii HOM05D005517 ORTHO05D006760 1.3e-16 89.4 79 69.6
Nitab4.5_0007375g0080 Nicotiana tabacum HOM05D005517 ORTHO05D006760 1.3e-16 89.4 74 71.6
QL10p050767 Quercus lobata HOM05D005517 ORTHO05D006760 1.3e-16 89.4 68 77.9
Ca_14034_v3 Cicer arietinum L. HOM05D005517 ORTHO05D006760 1.6e-16 89.0 69 69.6
Aa31LG5G11080 Aethionema arabicum HOM05D005517 ORTHO05D006760 2.2e-16 88.6 77 64.9
BcaC03g13514 Brassica carinata HOM05D005517 ORTHO05D006760 2.2e-16 88.6 73 68.5
BcaC03g13515 Brassica carinata HOM05D005517 ORTHO05D006760 2.2e-16 88.6 73 68.5
Cc03_g13370 Coffea canephora HOM05D005517 ORTHO05D006760 2.2e-16 88.6 74 68.9
PSO302G0245 Papaver somniferum HOM05D005517 ORTHO05D006760 2.8e-16 88.2 74 67.6
vmacro22457 Vaccinium macrocarpon HOM05D005517 ORTHO05D006760 2.8e-16 88.2 74 70.3
QL02p071008 Quercus lobata HOM05D005517 ORTHO05D006760 3.7e-16 87.8 64 78.1
Solyc04g009570.3 Solanum lycopersicum HOM05D005517 ORTHO05D006760 3.7e-16 87.8 74 71.6
Hma1.2p1_1057F.1_g252720 Hydrangea macrophylla HOM05D005517 ORTHO05D006760 4.8e-16 87.4 73 68.5
Lsat_1_v5_gn_1_29421 Lactuca sativa HOM05D005517 ORTHO05D006760 4.8e-16 87.4 71 71.8
BcaNung06018 Brassica carinata HOM05D005517 ORTHO05D006760 6.3e-16 87.0 73 67.1
C02p06560 Brassica napus HOM05D005517 ORTHO05D006760 1.1e-15 86.3 73 68.5
CSS0038475 Camellia sinensis var. sinensis HOM05D005517 ORTHO05D006760 1.1e-15 86.3 74 67.6
HanXRQChr16g0497941 Helianthus annuus HOM05D005517 ORTHO05D006760 1.8e-15 85.5 71 70.4
Rhsim10G0005200 Rhododendron simsii HOM05D005517 ORTHO05D006760 1.8e-15 85.5 73 68.5
CDE08G1355 Ceratophyllum demersum HOM05D005517 ORTHO05D006760 2.4e-15 85.1 76 63.2
Lsat_1_v5_gn_4_78980 Lactuca sativa HOM05D005517 ORTHO05D006760 3.1e-15 84.7 71 70.4
ECA232G0857 Erigeron canadensis HOM05D005517 ORTHO05D006760 5.3e-15 84.0 71 69.0
Rhsim08G0041900 Rhododendron simsii HOM05D005517 ORTHO05D006760 6.9e-15 83.6 74 68.9
TWI34G0084 Tripterygium wilfordii HOM05D005517 ORTHO05D006760 9.0e-15 83.2 74 67.6
TWI34G1158 Tripterygium wilfordii HOM05D005517 ORTHO05D006760 9.0e-15 83.2 74 67.6
Hund05668 Selenicereus undatus HOM05D005517 ORTHO05D006760 1.2e-14 82.8 77 63.6
SEGI_12962 Sequoiadendron giganteum HOM05D005517 ORTHO05D006760 1.2e-14 82.8 80 61.2
BcaC03g13513 Brassica carinata HOM05D005517 ORTHO05D006760 1.5e-14 82.4 72 63.9
Psat6g022360 Pisum sativum HOM05D005517 ORTHO05D006760 1.5e-14 82.4 79 65.8
Prupe.2G009500 Prunus persica HOM05D005517 ORTHO05D006760 3.4e-14 81.3 72 72.2
TWI60G0382 Tripterygium wilfordii HOM05D005517 ORTHO05D006760 3.4e-14 81.3 74 66.2
Thhalv10021865m.g Eutrema salsugineum HOM05D005517 ORTHO05D006760 4.5e-14 80.9 76 64.5
Zm00001eb293020 Zea mays HOM05D005517 ORTHO05D006760 4.5e-14 80.9 80 62.5
THA.LOC104814182 Tarenaya hassleriana HOM05D005517 ORTHO05D006760 5.9e-14 80.5 48 87.5
Haze_14891 Corylus avellana HOM05D005517 ORTHO05D006760 1.0e-13 79.7 144 43.1
Phvul.009G125500 Phaseolus vulgaris HOM05D005517 ORTHO05D006760 1.0e-13 79.7 53 79.2
Sabra16G0209900 Salix brachista HOM05D005517 ORTHO05D006760 1.7e-13 79.0 57 73.7
arahy.Tifrunner.gnm1.ann1.9JMW1H Arachis hypogaea HOM05D005517 ORTHO05D006760 3.8e-13 77.8 50 84.0
EL10Ac7g18130 Beta vulgaris HOM05D005517 ORTHO05D006760 3.8e-13 77.8 74 60.8
AUR62006995 Chenopodium quinoa HOM05D005517 ORTHO05D006760 1.4e-12 75.9 65 61.5
EL10Ac4g09777 Beta vulgaris HOM05D005517 ORTHO05D006760 2.5e-12 75.1 74 62.2
AUR62000640 Chenopodium quinoa HOM05D005517 ORTHO05D006760 2.5e-12 75.1 71 60.6
Hund07167 Selenicereus undatus HOM05D005517 ORTHO05D006760 2.5e-12 75.1 76 55.3
Peaxi162Scf00064g01122 Petunia axillaris HOM05D005517 ORTHO05D006760 7.2e-12 73.6 51 72.5
TPR.G36037 Trifolium pratense HOM05D005517 ORTHO05D006760 1.6e-11 72.4 46 80.4
Os03g0733000 Oryza sativa ssp. japonica HOM05D005517 ORTHO05D006760 1.0e-10 69.7 77 54.5
vmacro05969 Vaccinium macrocarpon HOM05D005517 ORTHO05D006760 3.9e-10 67.8 52 69.2
AagrBONN_evm.TU.Sc2ySwM_228.2988 Anthoceros agrestis HOM05D005517 ORTHO05D006760 9.7e-09 63.2 76 51.3
Cc02_g28320 Coffea canephora HOM05D005517 ORTHO05D006760 9.7e-09 63.2 58 62.1
Mapoly0055s0070 Marchantia polymorpha HOM05D005517 ORTHO05D006760 1.3e-08 62.8 79 46.8
Sed0001513 Sechium edule HOM05D005517 ORTHO05D006760 2.8e-08 61.6 34 100.0
Pp3c1_33450 Physcomitrium patens HOM05D005517 ORTHO05D006760 2.0e-06 55.5 74 47.3


User provided reference genes

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