Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g10000 Fragaria vesca HOM05D007228 ORTHO05D009099 0.0e+00 1304.7 655 100.0
FAN18G1110 Fragaria x ananassa HOM05D007228 ORTHO05D009099 0.0e+00 1286.2 653 98.9
FAN04G0692 Fragaria x ananassa HOM05D007228 ORTHO05D009099 0.0e+00 1223.8 634 96.8
FAN08G0661 Fragaria x ananassa HOM05D007228 ORTHO05D009099 0.0e+00 1185.2 638 93.3
RcHm_v2.0_Chr7g0188261 Rosa chinensis HOM05D007228 ORTHO05D009099 5.2e-303 1043.9 591 88.8
MD06G1128600 Malus domestica HOM05D007228 ORTHO05D009099 4.6e-275 951.0 687 70.7
QL10p000149 Quercus lobata HOM05D007228 ORTHO05D009099 5.2e-226 788.1 656 61.0
Ciclev10030919m.g Citrus clementina HOM05D007228 ORTHO05D009099 4.5e-222 775.0 661 60.1
TWI39G0517 Tripterygium wilfordii HOM05D007228 ORTHO05D009099 2.3e-221 772.7 659 59.5
Atru.chr6.1953 Acer truncatum HOM05D007228 ORTHO05D009099 1.9e-220 769.6 662 58.9
Prupe.5G138400 Prunus persica HOM05D007228 ORTHO05D009099 1.0e-213 747.3 533 71.1
Potri.015G109700 Populus trichocarpa HOM05D007228 ORTHO05D009099 1.5e-209 733.4 662 57.4
Duzib205G0703 Durio zibethinus HOM05D007228 ORTHO05D009099 2.0e-209 733.0 671 56.8
Dinv13695 Davidia involucrata HOM05D007228 ORTHO05D009099 8.3e-208 727.6 665 57.4
Gohir.D12G197500 Gossypium hirsutum HOM05D007228 ORTHO05D009099 7.0e-207 724.5 665 55.5
Lj4g0027006 Lotus japonicus HOM05D007228 ORTHO05D009099 2.0e-206 723.0 657 56.9
Haze_07072 Corylus avellana HOM05D007228 ORTHO05D009099 1.5e-204 716.8 710 55.2
Manes.06G128600 Manihot esculenta HOM05D007228 ORTHO05D009099 2.5e-204 716.1 664 56.6
Cpa.g.sc13.201 Carica papaya HOM05D007228 ORTHO05D009099 1.2e-201 707.2 665 55.3
GSVIVG01014990001 Vitis vinifera HOM05D007228 ORTHO05D009099 3.2e-199 699.1 657 54.9
Gorai.008G212000 Gossypium raimondii HOM05D007228 ORTHO05D009099 7.1e-199 698.0 644 55.1
Gohir.A12G195100 Gossypium hirsutum HOM05D007228 ORTHO05D009099 4.6e-198 695.3 648 54.8
Hma1.2p1_0338F.1_g129520 Hydrangea macrophylla HOM05D007228 ORTHO05D009099 3.0e-197 692.6 663 55.2
arahy.Tifrunner.gnm1.ann1.E4K3LT Arachis hypogaea HOM05D007228 ORTHO05D009099 5.1e-197 691.8 658 55.0
Glyma.08G006100 Glycine max HOM05D007228 ORTHO05D009099 5.1e-197 691.8 658 55.3
arahy.Tifrunner.gnm1.ann1.RK1GDQ Arachis hypogaea HOM05D007228 ORTHO05D009099 4.3e-196 688.7 658 54.6
Ca_16830_v3 Cicer arietinum L. HOM05D007228 ORTHO05D009099 1.2e-195 687.2 654 55.4
Medtr8g095540 Medicago truncatula HOM05D007228 ORTHO05D009099 4.1e-191 672.2 654 54.7
CARHR205770 Cardamine hirsuta HOM05D007228 ORTHO05D009099 3.5e-190 669.1 668 53.1
Thhalv10012911m.g Eutrema salsugineum HOM05D007228 ORTHO05D009099 1.1e-186 657.5 667 52.9
VMungo0251G0919 Vigna mungo HOM05D007228 ORTHO05D009099 4.0e-186 655.6 668 53.9
COL.COLO4_37286 Corchorus olitorius HOM05D007228 ORTHO05D009099 2.6e-185 652.9 665 51.9
BraA10t44962Z Brassica rapa HOM05D007228 ORTHO05D009099 4.4e-185 652.1 671 52.5
BolC9t59696H Brassica oleracea HOM05D007228 ORTHO05D009099 8.4e-184 647.9 669 51.6
BcaC06g32443 Brassica carinata HOM05D007228 ORTHO05D009099 1.1e-183 647.5 666 51.5
AL6G17680 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 1.4e-183 647.1 666 52.4
C09p69520 Brassica napus HOM05D007228 ORTHO05D009099 1.4e-183 647.1 670 51.6
Rhsim08G0200200 Rhododendron simsii HOM05D007228 ORTHO05D009099 5.4e-183 645.2 680 51.0
A10p29130 Brassica napus HOM05D007228 ORTHO05D009099 5.1e-181 638.6 671 51.6
Carub.0006s0635 Capsella rubella HOM05D007228 ORTHO05D009099 5.6e-180 635.2 668 52.4
AT5G07380 Arabidopsis thaliana HOM05D007228 ORTHO05D009099 1.6e-179 633.6 666 51.8
Solyc03g117990.1 Solanum lycopersicum HOM05D007228 ORTHO05D009099 1.1e-178 630.9 663 49.8
Actinidia18280 Actinidia chinensis HOM05D007228 ORTHO05D009099 9.0e-178 627.9 665 51.6
Sopen03g036890 Solanum pennellii HOM05D007228 ORTHO05D009099 1.5e-177 627.1 663 49.8
Psat7g040280 Pisum sativum HOM05D007228 ORTHO05D009099 5.8e-177 625.2 658 52.3
Manes.14G042701 Manihot esculenta HOM05D007228 ORTHO05D009099 9.3e-175 617.8 670 50.4
Aqoxy5G02968 Aquilegia oxysepala HOM05D007228 ORTHO05D009099 2.1e-174 616.7 668 50.0
Phvul.002G279800 Phaseolus vulgaris HOM05D007228 ORTHO05D009099 4.6e-174 615.5 661 52.0
THA.LOC104819419 Tarenaya hassleriana HOM05D007228 ORTHO05D009099 1.3e-173 614.0 662 50.9
Cfa018687 Carpinus fangiana HOM05D007228 ORTHO05D009099 5.1e-173 612.1 485 62.1
Peaxi162Scf00314g00833 Petunia axillaris HOM05D007228 ORTHO05D009099 2.4e-170 603.2 663 48.3
Nn3g16198 Nelumbo nucifera HOM05D007228 ORTHO05D009099 8.4e-168 594.7 591 54.3
Migut.D01167 Erythranthe guttata HOM05D007228 ORTHO05D009099 6.0e-166 588.6 667 48.3
Sabra15G0131800 Salix brachista HOM05D007228 ORTHO05D009099 2.3e-165 586.6 588 53.1
SalBow1G3473 Salvia bowleyana HOM05D007228 ORTHO05D009099 1.1e-164 584.3 669 49.3
Nitab4.5_0011883g0020 Nicotiana tabacum HOM05D007228 ORTHO05D009099 5.6e-164 582.0 668 47.5
MBI11_g17279_MAGBIO Magnolia biondii HOM05D007228 ORTHO05D009099 2.8e-163 579.7 601 50.6
PSO017G4664 Papaver somniferum HOM05D007228 ORTHO05D009099 1.8e-162 577.0 761 44.0
ECA247G3190 Erigeron canadensis HOM05D007228 ORTHO05D009099 1.2e-161 574.3 599 51.1
Cc04_g05590 Coffea canephora HOM05D007228 ORTHO05D009099 7.6e-161 571.6 650 47.4
Nitab4.5_0000976g0280 Nicotiana tabacum HOM05D007228 ORTHO05D009099 1.4e-159 567.4 656 47.1
PSO478G4831 Papaver somniferum HOM05D007228 ORTHO05D009099 3.2e-159 566.2 792 43.1
Sed0011749 Sechium edule HOM05D007228 ORTHO05D009099 1.6e-158 563.9 666 46.4
TPR.G12794 Trifolium pratense HOM05D007228 ORTHO05D009099 1.6e-158 563.9 564 52.5
vmacro19097 Vaccinium macrocarpon HOM05D007228 ORTHO05D009099 1.8e-157 560.5 500 57.0
SGA_v2.0_scaffold515G52653 Striga asiatica HOM05D007228 ORTHO05D009099 4.8e-155 552.4 670 47.5
Aa31LG3G18990 Aethionema arabicum HOM05D007228 ORTHO05D009099 1.8e-154 550.4 662 48.0
ClCG07G006120 Citrullus lanatus HOM05D007228 ORTHO05D009099 2.9e-152 543.1 677 45.3
TAR629G1179 Trochodendron aralioides HOM05D007228 ORTHO05D009099 3.2e-151 539.7 464 59.9
CAN.G1008.38 Capsicum annuum HOM05D007228 ORTHO05D009099 7.2e-151 538.5 686 44.5
Thecc.03G143400 Theobroma cacao HOM05D007228 ORTHO05D009099 2.3e-149 533.5 477 56.4
CsaV3_5G013390 Cucumis sativus L. HOM05D007228 ORTHO05D009099 8.5e-144 515.0 715 42.0
Lsat_1_v5_gn_1_30460 Lactuca sativa HOM05D007228 ORTHO05D009099 3.9e-141 506.1 605 46.0
CSS0045118 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 6.7e-141 505.4 473 55.2
HanXRQChr08g0229031 Helianthus annuus HOM05D007228 ORTHO05D009099 3.1e-138 496.5 522 49.4
MELO3C018355.2 Cucumis melo HOM05D007228 ORTHO05D009099 5.5e-135 485.7 595 44.9
Lj9C489T6 Lonicera japonica HOM05D007228 ORTHO05D009099 3.6e-134 483.0 659 44.0
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 2.0e-132 477.2 706 40.7
Zm00001eb334150 Zea mays HOM05D007228 ORTHO05D009099 2.2e-128 463.8 701 39.8
PGR142G1350 Punica granatum HOM05D007228 ORTHO05D009099 2.9e-128 463.4 721 40.1
Eucgr.E04338 Eucalyptus grandis HOM05D007228 ORTHO05D009099 5.5e-127 459.1 663 41.2
EL10Ac5g11261 Beta vulgaris HOM05D007228 ORTHO05D009099 2.0e-121 440.7 687 39.9
Os01g0103900 Oryza sativa ssp. japonica HOM05D007228 ORTHO05D009099 9.4e-119 431.8 489 45.8
AUR62036968 Chenopodium quinoa HOM05D007228 ORTHO05D009099 2.2e-112 410.6 680 38.2
Hund02521 Selenicereus undatus HOM05D007228 ORTHO05D009099 2.0e-100 370.9 806 34.2
Sc04g0000080 Simmondsia chinensis HOM05D007228 ORTHO05D009099 7.5e-100 369.0 506 42.3
Sc04g0000120 Simmondsia chinensis HOM05D007228 ORTHO05D009099 1.3e-99 368.2 506 42.3
AUR62032199 Chenopodium quinoa HOM05D007228 ORTHO05D009099 1.6e-97 361.3 706 35.3
Ah.02g114480 Amaranthus hybridus HOM05D003541 ORTHO05D004095 4.7e-94 349.7 667 36.1
PGSC0003DMG400014227 Solanum tuberosum HOM05D007228 ORTHO05D009099 4.7e-86 323.2 376 47.3
SEGI_11491 Sequoiadendron giganteum HOM05D007228 ORTHO05D009099 8.9e-85 318.9 451 39.7
unitig_747.g21316 Utricularia gibba HOM05D002839 ORTHO05D003349 2.9e-83 313.9 476 41.6
Lalb_Chr12g0202641 Lupinus albus HOM05D007228 ORTHO05D009099 1.3e-80 305.1 273 56.0
GSVIVG01035283001 Vitis vinifera HOM05D007228 ORTHO05D009099 9.9e-76 288.9 268 57.1
CSS0001938 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 3.0e-72 277.3 264 55.7
SMO119G0281 Selaginella moellendorffii HOM05D007228 ORTHO05D009099 6.0e-65 253.1 496 34.3
HPP92_021579 Vanilla planifolia HOM05D007228 ORTHO05D009099 1.3e-56 225.3 384 37.5
Psat0s3642g0120 Pisum sativum HOM05D007228 ORTHO05D009099 9.0e-53 212.6 393 35.9
Lalb_Chr12g0202651 Lupinus albus HOM05D007228 ORTHO05D009099 2.0e-52 211.5 196 54.1
Psat3g128520 Pisum sativum HOM05D007228 ORTHO05D009099 9.9e-52 209.1 394 36.0
TPR.G21492 Trifolium pratense HOM05D007228 ORTHO05D009099 1.4e-45 188.7 202 50.0
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 1.5e-39 168.7 177 50.8
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 1.9e-39 168.3 175 50.3
AagrBONN_evm.TU.Sc2ySwM_344.3780 Anthoceros agrestis HOM05D007228 ORTHO05D009099 1.3e-38 165.6 268 36.2
MSTRG.9383 Avicennia marina HOM05D007228 ORTHO05D009099 5.7e-31 140.2 200 45.0
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 1.8e-29 135.2 242 38.0
AUR62009120 Chenopodium quinoa HOM05D007228 ORTHO05D009099 2.4e-29 134.8 488 27.7
Lalb_Chr12g0202661 Lupinus albus HOM05D007228 ORTHO05D009099 9.7e-23 112.8 173 41.0
CDE06G2808 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 3.7e-22 110.9 162 34.6
AL468U10020 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 8.2e-22 109.8 94 54.3
Sp6g35490 Schrenkiella parvula HOM05D007228 ORTHO05D009099 2.2e-19 101.7 154 42.2
HanXRQChr08g0229021 Helianthus annuus HOM05D007228 ORTHO05D009099 6.5e-19 100.1 129 44.2
HPP92_021580 Vanilla planifolia HOM05D007228 ORTHO05D009099 7.4e-15 86.7 155 36.1
CDE02G0692 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 1.1e-13 82.8 96 42.7


User provided reference genes

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