Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g09770 Fragaria vesca HOM05D011179 ORTHO05D015652 3.2e-124 448.4 216 100.0
FAN08G0872 Fragaria x ananassa HOM05D011179 ORTHO05D017929 1.4e-98 363.2 244 77.5
RcHm_v2.0_Chr7g0188481 Rosa chinensis HOM05D011179 ORTHO05D017929 7.0e-63 244.6 205 62.0
RcHm_v2.0_Chr3g0481091 Rosa chinensis HOM05D011179 ORTHO05D017929 1.4e-58 230.3 196 61.7
FvH4_5g09780 Fragaria vesca HOM05D011179 ORTHO05D017929 2.7e-54 216.1 241 51.5
FAN13G2254 Fragaria x ananassa HOM05D011179 ORTHO05D017929 1.1e-52 210.7 281 43.8
FAN13G3208 Fragaria x ananassa HOM05D011179 ORTHO05D017929 1.1e-52 210.7 281 43.8
FAN08G1058 Fragaria x ananassa HOM05D011179 ORTHO05D017929 5.1e-45 185.3 221 49.3
FvH4_5g31341 Fragaria vesca HOM05D011179 ORTHO05D045499 3.6e-27 125.9 178 43.3
FAN04G2164 Fragaria x ananassa HOM05D003355 ORTHO05D015652 7.6e-25 118.2 140 42.1
RcHm_v2.0_Chr7g0223281 Rosa chinensis HOM05D011179 ORTHO05D017929 2.1e-22 110.2 148 43.2
RcHm_v2.0_Chr2g0090081 Rosa chinensis HOM05D003355 ORTHO05D015652 9.6e-20 101.3 157 36.3
FvH4_6g42550 Fragaria vesca HOM05D012211 ORTHO05D045515 4.8e-19 99.0 147 40.8
RcHm_v2.0_Chr3g0469061 Rosa chinensis HOM05D003355 ORTHO05D022549 1.4e-18 97.4 150 36.0
RcHm_v2.0_Chr3g0469081 Rosa chinensis HOM05D003355 ORTHO05D022549 1.4e-18 97.4 150 36.0
MD03G1170900 Malus domestica HOM05D003355 ORTHO05D015652 2.6e-17 93.2 140 36.4
FAN14G1550 Fragaria x ananassa HOM05D012211 ORTHO05D204992 1.0e-16 91.3 114 43.9
FAN05G2571 Fragaria x ananassa HOM05D012211 ORTHO05D045515 1.7e-16 90.5 114 43.9
RcHm_v2.0_Chr7g0210441 Rosa chinensis HOM05D012211 ORTHO05D029661 1.7e-16 90.5 148 37.2
FvH4_3g36450 Fragaria vesca HOM05D012211 ORTHO05D013882 1.9e-15 87.0 122 39.3
FvH4_3g36460 Fragaria vesca HOM05D012211 ORTHO05D197262 3.2e-15 86.3 150 34.0
FAN15G0401 Fragaria x ananassa HOM05D003355 ORTHO05D015652 5.5e-15 85.5 84 47.6
FAN18G3963 Fragaria x ananassa HOM05D003355 ORTHO05D015652 5.5e-15 85.5 105 42.9
FAN25G2890 Fragaria x ananassa HOM05D012211 ORTHO05D205130 2.1e-14 83.6 114 43.0
FvH4_6g42520 Fragaria vesca HOM05D012211 ORTHO05D029661 6.0e-14 82.0 126 37.3
FAN13G3109 Fragaria x ananassa HOM05D000142 ORTHO05D000124 1.3e-13 80.9 140 34.3
FAN14G2936 Fragaria x ananassa HOM05D012211 ORTHO05D029661 1.8e-13 80.5 126 36.5
RcHm_v2.0_Chr5g0014031 Rosa chinensis HOM05D003355 ORTHO05D013882 5.1e-13 79.0 127 35.4
FvH4_4g27690 Fragaria vesca HOM05D003355 ORTHO05D006192 8.7e-13 78.2 153 32.7
FAN12G1390 Fragaria x ananassa HOM05D003355 ORTHO05D006192 8.7e-13 78.2 153 32.7
FAN12G1758 Fragaria x ananassa HOM05D003355 ORTHO05D006192 8.7e-13 78.2 153 32.7
FAN22G1021 Fragaria x ananassa HOM05D003355 ORTHO05D006192 8.7e-13 78.2 153 32.7
PSO133G0101 Papaver somniferum HOM05D003355 ORTHO05D006192 8.7e-13 78.2 153 33.3
PSO541G1087 Papaver somniferum HOM05D003355 ORTHO05D006192 8.7e-13 78.2 153 33.3
RcHm_v2.0_Chr7g0179721 Rosa chinensis HOM05D003355 ORTHO05D025419 1.1e-12 77.8 133 33.8
Prupe.1G308200 Prunus persica HOM05D003355 ORTHO05D006192 1.5e-12 77.4 153 33.3
RcHm_v2.0_Chr5g0049291 Rosa chinensis HOM05D003355 ORTHO05D015652 1.9e-12 77.0 132 34.8
Ah.04g164110 Amaranthus hybridus HOM05D003355 ORTHO05D006192 2.5e-12 76.6 153 32.0
BcaB08g37262 Brassica carinata HOM05D003355 ORTHO05D006192 2.5e-12 76.6 155 32.3
CANSAT78G0728 Cannabis sativa HOM05D003355 ORTHO05D006192 3.3e-12 76.3 153 31.4
ClCG09G022570 Citrullus lanatus HOM05D003355 ORTHO05D006192 4.3e-12 75.9 153 32.7
RcHm_v2.0_Chr5g0014041 Rosa chinensis HOM05D003355 ORTHO05D013882 4.3e-12 75.9 128 35.2
Sp6g34500 Schrenkiella parvula HOM05D003355 ORTHO05D006192 4.3e-12 75.9 150 33.3
TWI60G1544 Tripterygium wilfordii HOM05D003355 ORTHO05D006192 4.3e-12 75.9 153 32.7
BcaC03g13229 Brassica carinata HOM05D003355 ORTHO05D006192 5.7e-12 75.5 150 34.7
BolC2t06320H Brassica oleracea HOM05D003355 ORTHO05D006192 5.7e-12 75.5 150 34.7
BraA02t04958Z Brassica rapa HOM05D003355 ORTHO05D006192 5.7e-12 75.5 150 34.7
CiPaw.05G009200 Carya illinoinensis HOM05D003355 ORTHO05D006192 5.7e-12 75.5 153 32.0
QL02p047945 Quercus lobata HOM05D003355 ORTHO05D006192 5.7e-12 75.5 153 31.4
Atru.chr3.4019 Acer truncatum HOM05D003355 ORTHO05D006192 7.4e-12 75.1 153 31.4
C02p03610 Brassica napus HOM05D003355 ORTHO05D006192 7.4e-12 75.1 150 34.7
CSS0050028 Camellia sinensis var. sinensis HOM05D003355 ORTHO05D006192 7.4e-12 75.1 153 32.0
FvH4_5g22900 Fragaria vesca HOM05D003355 ORTHO05D015652 7.4e-12 75.1 140 35.0
MD16G1045100 Malus domestica HOM05D003355 ORTHO05D006192 7.4e-12 75.1 153 32.7
RcHm_v2.0_Chr4g0435531 Rosa chinensis HOM05D003355 ORTHO05D006192 7.4e-12 75.1 153 32.0
Hund05007 Selenicereus undatus HOM05D003355 ORTHO05D006192 7.4e-12 75.1 153 32.7
Solyc02g069950.3 Solanum lycopersicum HOM05D003355 ORTHO05D006192 7.4e-12 75.1 153 32.0
Sopen02g019090 Solanum pennellii HOM05D003355 ORTHO05D006192 7.4e-12 75.1 153 32.0
MD13G1044300 Malus domestica HOM05D003355 ORTHO05D006192 9.6e-12 74.7 153 32.0
RcHm_v2.0_Chr5g0014021 Rosa chinensis HOM05D003355 ORTHO05D013882 9.6e-12 74.7 153 35.3
TAR629G1053 Trochodendron aralioides HOM05D003355 ORTHO05D006192 9.6e-12 74.7 153 32.0
AUR62026608 Chenopodium quinoa HOM05D003355 ORTHO05D006192 1.3e-11 74.3 153 32.0
AUR62036327 Chenopodium quinoa HOM05D003355 ORTHO05D006192 1.3e-11 74.3 153 32.0
Ciclev10020638m.g Citrus clementina HOM05D003355 ORTHO05D006192 1.3e-11 74.3 153 32.0
MD02G1015700 Malus domestica HOM05D003355 ORTHO05D247400 1.3e-11 74.3 137 32.8
Cpa.g.sc5.209 Carica papaya HOM05D003355 ORTHO05D006192 1.6e-11 73.9 144 34.0
Eucgr.F01461 Eucalyptus grandis HOM05D003355 ORTHO05D006192 1.6e-11 73.9 153 32.0
Thhalv10013751m.g Eutrema salsugineum HOM05D003355 ORTHO05D006192 1.6e-11 73.9 150 32.7
AT5G08420 Arabidopsis thaliana HOM05D003355 ORTHO05D006192 2.1e-11 73.6 150 32.7
FvH4_1g11160 Fragaria vesca HOM05D003355 ORTHO05D013882 2.1e-11 73.6 127 36.2
RcHm_v2.0_Chr7g0191051 Rosa chinensis HOM05D003355 ORTHO05D347038 2.1e-11 73.6 134 33.6
EL10Ac2g03332 Beta vulgaris HOM05D003355 ORTHO05D006192 2.8e-11 73.2 153 31.4
CBR_g23447 Chara braunii HOM05D003355 ORTHO05D006192 2.8e-11 73.2 138 36.2
Duzib170G1171 Durio zibethinus HOM05D003355 ORTHO05D006192 2.8e-11 73.2 151 32.5
LjContig00564g0020908 Lotus japonicus HOM05D003355 ORTHO05D006192 2.8e-11 73.2 153 32.0
SalBow3G3003 Salvia bowleyana HOM05D003355 ORTHO05D006192 2.8e-11 73.2 153 31.4
arahy.Tifrunner.gnm1.ann1.A7H436 Arachis hypogaea HOM05D003355 ORTHO05D006192 3.7e-11 72.8 153 32.7
arahy.Tifrunner.gnm1.ann1.WNI1ZF Arachis hypogaea HOM05D003355 ORTHO05D006192 3.7e-11 72.8 153 32.7
A10p28340 Brassica napus HOM05D003355 ORTHO05D006192 3.7e-11 72.8 150 32.7
C09p68600 Brassica napus HOM05D003355 ORTHO05D006192 3.7e-11 72.8 150 32.7
BolC9t59602H Brassica oleracea HOM05D003355 ORTHO05D006192 3.7e-11 72.8 150 32.7
BraA10t44881Z Brassica rapa HOM05D003355 ORTHO05D006192 3.7e-11 72.8 150 32.7
SMO169G0154 Selaginella moellendorffii HOM05D003355 ORTHO05D006192 3.7e-11 72.8 151 32.5
Actinidia28067 Actinidia chinensis HOM05D003355 ORTHO05D006192 4.8e-11 72.4 146 32.9
ATR0559G338 Amborella trichopoda HOM05D003355 ORTHO05D006192 4.8e-11 72.4 150 31.3
HanXRQChr16g0498231 Helianthus annuus HOM05D003355 ORTHO05D006192 4.8e-11 72.4 144 34.0
Nn8g39637 Nelumbo nucifera HOM05D003355 ORTHO05D006192 4.8e-11 72.4 153 30.7
Nitab4.5_0001583g0050 Nicotiana tabacum HOM05D003355 ORTHO05D006192 4.8e-11 72.4 153 31.4
Oeu052000.3 Olea europaea HOM05D003355 ORTHO05D006192 4.8e-11 72.4 136 35.3
Os10g0452800 Oryza sativa ssp. japonica HOM05D003355 ORTHO05D006192 4.8e-11 72.4 156 31.4
AagrBONN_evm.TU.Sc2ySwM_117.1345 Anthoceros agrestis HOM05D003355 ORTHO05D006192 6.3e-11 72.0 156 30.8
MSTRG.18871 Avicennia marina HOM05D003355 ORTHO05D006192 6.3e-11 72.0 153 31.4
EL10Ac3g07470 Beta vulgaris HOM05D003355 ORTHO05D006192 6.3e-11 72.0 153 30.7
Lsat_1_v5_gn_7_68200 Lactuca sativa HOM05D003355 ORTHO05D006192 6.3e-11 72.0 153 30.7
Carub.0006s0734 Capsella rubella HOM05D003355 ORTHO05D006192 8.2e-11 71.6 138 34.8
COL.COLO4_07227 Corchorus olitorius HOM05D003355 ORTHO05D006192 8.2e-11 71.6 151 31.8
Dinv14066 Davidia involucrata HOM05D003355 ORTHO05D006192 8.2e-11 71.6 150 32.0
FAN20G1497 Fragaria x ananassa HOM05D011179 ORTHO05D015652 8.2e-11 71.6 67 46.3
Gohir.D02G102800 Gossypium hirsutum HOM05D003355 ORTHO05D006192 8.2e-11 71.6 151 31.8
Gorai.005G116700 Gossypium raimondii HOM05D003355 ORTHO05D006192 8.2e-11 71.6 151 31.8
HPP92_009124 Vanilla planifolia HOM05D003355 ORTHO05D006192 8.2e-11 71.6 151 31.8
Aqoxy4G00025 Aquilegia oxysepala HOM05D003355 ORTHO05D006192 1.1e-10 71.2 153 31.4
Nitab4.5_0001225g0080 Nicotiana tabacum HOM05D003355 ORTHO05D006192 1.1e-10 71.2 153 31.4
Sed0012728 Sechium edule HOM05D003355 ORTHO05D006192 1.1e-10 71.2 153 32.0
Aa31LG3G18130 Aethionema arabicum HOM05D003355 ORTHO05D006192 1.4e-10 70.9 150 32.0
AL6G18890 Arabidopsis lyrata HOM05D003355 ORTHO05D006192 1.4e-10 70.9 144 32.6
FAN19G0319 Fragaria x ananassa HOM05D003355 ORTHO05D013882 1.4e-10 70.9 127 35.4
Glyma.14G045600 Glycine max HOM05D003355 ORTHO05D006192 1.4e-10 70.9 150 31.3
Peaxi162Scf01064g00246 Petunia axillaris HOM05D003355 ORTHO05D006192 1.4e-10 70.9 154 30.5
Peaxi162Scf53097g00004 Petunia axillaris HOM05D003355 ORTHO05D006192 1.4e-10 70.9 154 30.5
Cc05_g16150 Coffea canephora HOM05D003355 ORTHO05D006192 1.8e-10 70.5 153 30.7
Lalb_Chr10g0105821 Lupinus albus HOM05D003355 ORTHO05D006192 1.8e-10 70.5 153 32.0
Psat2g023040 Pisum sativum HOM05D003355 ORTHO05D006192 1.8e-10 70.5 153 32.0
THA.LOC104818391 Tarenaya hassleriana HOM05D003355 ORTHO05D006192 1.8e-10 70.5 144 33.3
TPR.G15674 Trifolium pratense HOM05D003355 ORTHO05D006192 1.8e-10 70.5 153 32.0
CARHR204600 Cardamine hirsuta HOM05D003355 ORTHO05D006192 2.4e-10 70.1 177 31.1
Migut.M01551 Erythranthe guttata HOM05D003355 ORTHO05D006192 2.4e-10 70.1 151 31.8
FvH4_1g25241 Fragaria vesca HOM05D066387 ORTHO05D046271 2.4e-10 70.1 156 32.7
Medtr5g087520 Medicago truncatula HOM05D003355 ORTHO05D006192 2.4e-10 70.1 153 31.4
THA.LOC104826152 Tarenaya hassleriana HOM05D003355 ORTHO05D006192 2.4e-10 70.1 144 32.6
Thecc.09G244300 Theobroma cacao HOM05D003355 ORTHO05D006192 2.4e-10 70.1 151 31.1
TPR.G11717 Trifolium pratense HOM05D003355 ORTHO05D006192 2.4e-10 70.1 153 32.7
MELO3C012627.2 Cucumis melo HOM05D003355 ORTHO05D006192 3.1e-10 69.7 150 33.3
CsaV3_7G022720 Cucumis sativus L. HOM05D003355 ORTHO05D006192 3.1e-10 69.7 150 33.3
FAN07G1422 Fragaria x ananassa HOM05D003355 ORTHO05D006192 3.1e-10 69.7 151 30.5
Glyma.02G273000 Glycine max HOM05D003355 ORTHO05D006192 3.1e-10 69.7 150 31.3
Rhsim06G0239500 Rhododendron simsii HOM05D003355 ORTHO05D006192 3.1e-10 69.7 153 31.4
RcHm_v2.0_Chr7g0195631 Rosa chinensis HOM05D011179 ORTHO05D346117 3.1e-10 69.7 110 39.1
C02p02380 Brassica napus HOM05D003355 ORTHO05D006192 4.1e-10 69.3 127 36.2
Ca_06140_v3 Cicer arietinum L. HOM05D003355 ORTHO05D006192 4.1e-10 69.3 153 32.0
Ca_06141_v3 Cicer arietinum L. HOM05D003355 ORTHO05D006192 4.1e-10 69.3 153 32.0
ECA240G2766 Erigeron canadensis HOM05D003355 ORTHO05D006192 5.3e-10 68.9 144 31.9
MCO15G216 Micromonas commoda HOM05D003355 ORTHO05D006192 5.3e-10 68.9 160 30.0
PGSC0003DMG400021187 Solanum tuberosum HOM05D003355 ORTHO05D006192 6.9e-10 68.6 133 34.6
Hma1.2p1_0334F.1_g128710 Hydrangea macrophylla HOM05D003355 ORTHO05D006192 9.0e-10 68.2 150 30.0
Potri.007G065500 Populus trichocarpa HOM05D003355 ORTHO05D006192 9.0e-10 68.2 153 30.7
Phvul.008G209100 Phaseolus vulgaris HOM05D003355 ORTHO05D006192 1.2e-09 67.8 153 30.1
BraA02t04852Z Brassica rapa HOM05D003355 ORTHO05D006192 1.5e-09 67.4 127 36.2
FvH4_2g01170 Fragaria vesca HOM05D003355 ORTHO05D025419 1.5e-09 67.4 134 32.8
Mapoly0002s0245 Marchantia polymorpha HOM05D003355 ORTHO05D006192 1.5e-09 67.4 153 29.4
vmacro11671 Vaccinium macrocarpon HOM05D003355 ORTHO05D006192 1.5e-09 67.4 153 30.1
EL10Ac1g02148 Beta vulgaris HOM05D003355 ORTHO05D006192 2.0e-09 67.0 153 30.7
Cfa021382 Carpinus fangiana HOM05D003355 ORTHO05D006192 2.0e-09 67.0 153 31.4
Duzib150G0383 Durio zibethinus HOM05D003355 ORTHO05D006192 2.0e-09 67.0 138 34.8
FAN02G2793 Fragaria x ananassa HOM05D012211 ORTHO05D210893 2.0e-09 67.0 170 27.1
FAN18G2256 Fragaria x ananassa HOM05D011179 ORTHO05D045499 3.4e-09 66.2 58 53.4
Pp3c24_18710 Physcomitrium patens HOM05D003355 ORTHO05D006192 3.4e-09 66.2 141 33.3
SalBow8G2178 Salvia bowleyana HOM05D003355 ORTHO05D006192 4.5e-09 65.9 133 33.8
GSVIVG01037891001 Vitis vinifera HOM05D003355 ORTHO05D006192 4.5e-09 65.9 153 29.4
QL02p103586 Quercus lobata HOM05D003355 ORTHO05D006192 5.9e-09 65.5 100 35.0
SGA_v2.0_scaffold186G40213 Striga asiatica HOM05D003355 ORTHO05D006192 7.6e-09 65.1 133 33.1
BolC3t13633H Brassica oleracea HOM05D003355 ORTHO05D006192 1.0e-08 64.7 139 34.5
CARHR204610 Cardamine hirsuta HOM05D003355 ORTHO05D006192 1.0e-08 64.7 84 42.9
FAN24G2229 Fragaria x ananassa HOM05D003355 ORTHO05D025419 1.0e-08 64.7 142 30.3
Gohir.A02G087800 Gossypium hirsutum HOM05D003355 ORTHO05D006192 1.0e-08 64.7 154 29.9
CDE07G1612 Ceratophyllum demersum HOM05D003355 ORTHO05D006192 1.3e-08 64.3 100 35.0
PRCOL_00006993 Prasinoderma coloniale HOM05D003355 ORTHO05D006192 1.3e-08 64.3 144 28.5
BolC2t06203H Brassica oleracea HOM05D003355 ORTHO05D006192 1.7e-08 63.9 127 35.4
Lj8A188G54 Lonicera japonica HOM05D003355 ORTHO05D006192 1.7e-08 63.9 137 31.4
FvH4_5g09741 Fragaria vesca HOM05D011179 ORTHO05D017929 3.8e-08 62.8 67 43.3
Prupe.6G351700 Prunus persica HOM05D003355 ORTHO05D013882 3.8e-08 62.8 156 30.1
BraA03t10346Z Brassica rapa HOM05D003355 ORTHO05D006192 5.0e-08 62.4 85 40.0
Zm00001eb155040 Zea mays HOM05D003355 ORTHO05D006192 6.5e-08 62.0 115 35.7
Manes.06G172500 Manihot esculenta HOM05D003355 ORTHO05D006192 8.5e-08 61.6 124 35.5
Prupe.2G125300 Prunus persica HOM05D003355 ORTHO05D013882 8.5e-08 61.6 130 31.5
Rhsim10G0069800 Rhododendron simsii HOM05D003355 ORTHO05D006192 8.5e-08 61.6 100 35.0
MD04G1231500 Malus domestica HOM05D003355 ORTHO05D013882 1.4e-07 60.8 82 41.5
FAN27G2687 Fragaria x ananassa HOM05D003355 ORTHO05D025419 3.2e-07 59.7 130 29.2
FvH4_2g08143 Fragaria vesca HOM05D017954 ORTHO05D015652 7.2e-07 58.5 109 38.5
RcHm_v2.0_Chr1g0368161 Rosa chinensis HOM05D003355 ORTHO05D019199 7.2e-07 58.5 98 26.5
QL01p011915 Quercus lobata HOM05D003355 ORTHO05D006192 9.3e-07 58.2 103 31.1
FAN05G3648 Fragaria x ananassa HOM05D012211 ORTHO05D029661 1.6e-06 57.4 154 27.9
Sabra07G0052100 Salix brachista HOM05D003355 ORTHO05D006192 2.1e-06 57.0 100 33.0
CARHR204150 Cardamine hirsuta HOM05D003355 ORTHO05D006192 6.1e-06 55.5 79 39.2
FvH4_2g08141 Fragaria vesca HOM05D003355 ORTHO05D197404 6.1e-06 55.5 129 29.5
MBI07_g21077_MAGBIO Magnolia biondii HOM05D003355 ORTHO05D006192 7.9e-06 55.1 121 31.4


User provided reference genes

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