Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 9.5e-98 360.1 179 100.0
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.1e-96 356.7 179 98.9
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.1e-96 356.7 179 98.9
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 5.8e-95 350.9 179 97.2
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 3.2e-93 345.1 179 95.0
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 8.6e-91 337.0 179 91.6
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 8.1e-81 303.9 179 83.8
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 1.8e-80 302.8 179 82.1
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 1.3e-75 286.6 179 78.8
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 2.1e-65 252.7 181 71.3
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 2.8e-65 252.3 181 71.8
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 1.8e-64 249.6 181 70.2
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 2.4e-64 249.2 182 70.3
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 6.9e-64 247.7 181 69.1
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 9.0e-64 247.3 181 69.6
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 9.0e-64 247.3 187 69.0
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 2.6e-63 245.7 181 69.1
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 1.0e-62 243.8 186 67.2
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 1.7e-62 243.0 182 69.2
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 1.7e-62 243.0 190 65.3
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 7.1e-61 237.7 192 66.1
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 9.3e-61 237.3 183 67.2
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 2.1e-60 236.1 188 64.4
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 6.0e-60 234.6 184 65.8
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 7.9e-60 234.2 187 65.8
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 1.0e-59 233.8 169 65.7
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.3e-59 233.4 187 66.8
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 2.3e-59 232.6 184 66.3
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 3.0e-59 232.3 182 65.4
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 3.0e-59 232.3 179 65.4
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 3.9e-59 231.9 181 66.3
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 5.1e-59 231.5 185 65.9
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 1.9e-58 229.6 185 65.4
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 1.9e-58 229.6 189 66.1
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 1.9e-58 229.6 183 63.4
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 2.5e-58 229.2 189 62.4
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 7.4e-58 227.6 179 67.0
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 9.6e-58 227.3 179 65.9
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 9.6e-58 227.3 197 62.4
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 2.1e-57 226.1 189 64.0
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 2.1e-57 226.1 191 59.7
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 3.7e-57 225.3 179 65.4
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 3.7e-57 225.3 179 63.7
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 3.7e-57 225.3 183 61.7
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 6.2e-57 224.6 182 64.8
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 6.2e-57 224.6 184 61.4
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 6.2e-57 224.6 179 63.7
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 8.2e-57 224.2 184 63.6
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 8.2e-57 224.2 180 63.9
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 8.2e-57 224.2 181 65.7
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 1.1e-56 223.8 174 64.4
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 1.4e-56 223.4 182 64.8
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 2.4e-56 222.6 179 63.7
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 5.3e-56 221.5 187 62.6
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 6.9e-56 221.1 225 55.1
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 1.2e-55 220.3 223 56.5
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 1.2e-55 220.3 185 60.5
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 1.5e-55 219.9 179 64.2
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 2.0e-55 219.5 151 68.2
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 2.0e-55 219.5 183 61.2
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 2.0e-55 219.5 179 61.5
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 2.6e-55 219.2 196 60.7
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 2.6e-55 219.2 187 62.0
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 3.4e-55 218.8 249 50.2
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 4.5e-55 218.4 186 62.4
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.0e-54 217.2 185 62.2
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 1.0e-54 217.2 186 60.8
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 1.3e-54 216.9 192 58.9
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 2.2e-54 216.1 199 57.3
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 2.2e-54 216.1 194 58.2
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 2.2e-54 216.1 162 66.0
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 2.9e-54 215.7 190 60.0
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 3.8e-54 215.3 179 63.7
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 5.0e-54 214.9 199 56.8
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 6.5e-54 214.5 189 58.2
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 8.4e-54 214.2 134 73.9
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 1.4e-53 213.4 176 60.8
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.5e-53 212.6 186 62.4
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 2.5e-53 212.6 193 59.1
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 2.5e-53 212.6 179 59.8
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 3.2e-53 212.2 181 61.9
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 5.5e-53 211.5 186 61.8
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 5.5e-53 211.5 139 73.4
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 5.5e-53 211.5 186 59.1
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 1.2e-52 210.3 182 58.2
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 2.1e-52 209.5 181 58.6
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 4.6e-52 208.4 180 57.8
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 7.9e-52 207.6 180 60.0
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 1.3e-51 206.8 183 56.3
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 1.3e-51 206.8 186 55.9
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 1.3e-51 206.8 191 59.2
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 1.8e-51 206.5 195 56.4
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 3.0e-51 205.7 273 45.4
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 5.1e-51 204.9 172 61.6
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 6.7e-51 204.5 183 58.5
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 8.7e-51 204.1 163 63.2
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 1.5e-50 203.4 181 57.5
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 1.9e-50 203.0 163 62.0
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 2.5e-50 202.6 187 55.1
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 3.3e-50 202.2 189 55.6
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 3.3e-50 202.2 152 67.1
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 5.7e-50 201.4 186 56.5
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 5.7e-50 201.4 183 55.2
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 9.7e-50 200.7 184 59.2
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 1.6e-49 199.9 204 54.9
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 2.2e-49 199.5 189 55.6
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 3.7e-49 198.7 179 57.0
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 6.3e-49 198.0 189 55.6
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 6.3e-49 198.0 115 75.7
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 2.4e-48 196.1 189 54.5
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 4.1e-48 195.3 185 53.5
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 4.1e-48 195.3 194 54.1
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 6.9e-48 194.5 190 54.7
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 6.9e-48 194.5 129 70.5
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 1.5e-47 193.4 184 57.1
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 2.6e-47 192.6 190 52.6
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 7.7e-47 191.0 195 54.9
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.3e-46 190.3 160 64.4
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 1.2e-44 183.7 189 52.4
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 4.6e-44 181.8 160 61.9
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 4.3e-42 175.3 128 65.6
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 5.7e-42 174.9 140 61.4
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 1.7e-41 173.3 114 65.8
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 4.5e-39 165.2 125 56.8
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 5.5e-37 158.3 123 56.1
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 1.6e-36 156.8 124 56.5
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 9.7e-34 147.5 87 73.6
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 2.2e-33 146.4 91 75.8
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 5.3e-32 141.7 142 57.0
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 1.5e-29 133.7 72 79.2
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 1.6e-28 130.2 132 48.5
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 3.6e-28 129.0 78 70.5
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 6.1e-28 128.3 80 76.2
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 3.0e-27 125.9 131 57.3
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 2.0e-26 123.2 86 66.3
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 1.2e-23 114.0 112 57.1
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 5.9e-23 111.7 116 43.1
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 5.0e-22 108.6 72 62.5
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 1.6e-20 103.6 65 67.7
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 2.0e-18 96.7 165 35.2
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 4.4e-18 95.5 59 69.5
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 1.1e-16 90.9 85 63.5
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 1.1e-08 64.3 35 77.1
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 5.4e-08 62.0 106 39.6


User provided reference genes

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