Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g09660 Fragaria vesca HOM05D005199 ORTHO05D006277 6.7e-117 424.5 290 100.0
FAN18G4150 Fragaria x ananassa HOM05D005199 ORTHO05D006277 5.6e-116 421.4 289 99.0
FAN04G2629 Fragaria x ananassa HOM05D005199 ORTHO05D006277 3.4e-113 412.1 291 96.9
FAN13G0330 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.3e-112 410.2 289 92.4
FAN08G3145 Fragaria x ananassa HOM05D005199 ORTHO05D006277 3.5e-110 402.1 290 91.7
RcHm_v2.0_Chr7g0188591 Rosa chinensis HOM05D005199 ORTHO05D006277 6.1e-102 374.8 291 88.7
Prupe.5G140700 Prunus persica HOM05D005199 ORTHO05D006277 5.9e-81 305.1 297 64.0
MD06G1129500 Malus domestica HOM05D005199 ORTHO05D006277 1.1e-79 300.8 294 59.2
GSVIVG01008655001 Vitis vinifera HOM05D005199 ORTHO05D006277 9.4e-79 297.7 290 71.4
MD14G1146700 Malus domestica HOM05D005199 ORTHO05D006277 2.1e-78 296.6 295 71.5
CiPaw.12G000800 Carya illinoinensis HOM05D005199 ORTHO05D006277 4.7e-78 295.4 291 60.5
Haze_07093 Corylus avellana HOM05D005199 ORTHO05D006277 4.7e-78 295.4 291 69.4
Sabra15G0129500 Salix brachista HOM05D005199 ORTHO05D006277 4.7e-78 295.4 304 55.9
Sabra15G0127400 Salix brachista HOM05D005199 ORTHO05D006277 1.0e-77 294.3 304 55.6
Manes.06G127100 Manihot esculenta HOM05D005199 ORTHO05D006277 1.5e-76 290.4 290 68.3
Nn3g16267 Nelumbo nucifera HOM05D005199 ORTHO05D006277 1.7e-75 287.0 290 67.6
Ciclev10033942m.g Citrus clementina HOM05D005199 ORTHO05D006277 3.7e-75 285.8 293 58.7
Potri.015G106900 Populus trichocarpa HOM05D005199 ORTHO05D006277 4.8e-75 285.4 306 55.2
QL10p000401 Quercus lobata HOM05D005199 ORTHO05D006277 6.3e-75 285.0 292 62.7
SalBow7G2845 Salvia bowleyana HOM05D005199 ORTHO05D006277 6.3e-75 285.0 290 73.4
Cfa018703 Carpinus fangiana HOM05D005199 ORTHO05D006277 1.8e-74 283.5 291 56.7
Peaxi162Scf00314g00633 Petunia axillaris HOM05D005199 ORTHO05D006277 5.3e-74 282.0 290 75.2
TWI39G0590 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 1.6e-73 280.4 290 61.0
Medtr3g098560 Medicago truncatula HOM05D005199 ORTHO05D006277 7.7e-73 278.1 293 64.5
CSS0050347 Camellia sinensis var. sinensis HOM05D005199 ORTHO05D006277 1.0e-72 277.7 290 76.9
Nitab4.5_0000976g0090 Nicotiana tabacum HOM05D005199 ORTHO05D006277 1.0e-72 277.7 292 75.3
Thecc.03G141200 Theobroma cacao HOM05D005199 ORTHO05D006277 1.3e-72 277.3 293 64.8
TPR.G25958 Trifolium pratense HOM05D005199 ORTHO05D006277 1.3e-72 277.3 294 59.9
CAN.G843.7 Capsicum annuum HOM05D005199 ORTHO05D006277 1.7e-72 276.9 297 73.7
Lj9A487G53 Lonicera japonica HOM05D005199 ORTHO05D006277 2.2e-72 276.6 290 54.1
Atru.chr6.1926 Acer truncatum HOM05D005199 ORTHO05D006277 3.8e-72 275.8 290 68.3
Duzib205G1536 Durio zibethinus HOM05D005199 ORTHO05D006277 5.0e-72 275.4 297 68.7
Nitab4.5_0011600g0020 Nicotiana tabacum HOM05D005199 ORTHO05D006277 5.0e-72 275.4 291 74.9
Dinv13715 Davidia involucrata HOM05D005199 ORTHO05D006277 6.5e-72 275.0 291 65.6
HanXRQChr09g0273821 Helianthus annuus HOM05D005199 ORTHO05D006277 8.5e-72 274.6 328 54.3
Rhsim08G0198200 Rhododendron simsii HOM05D005199 ORTHO05D006277 1.1e-71 274.2 290 64.8
Manes.14G044200 Manihot esculenta HOM05D005199 ORTHO05D006277 5.5e-71 271.9 290 64.5
Ca_10877_v3 Cicer arietinum L. HOM05D005199 ORTHO05D006277 2.1e-70 270.0 293 63.8
Psat5g056040 Pisum sativum HOM05D005199 ORTHO05D006277 2.1e-70 270.0 293 64.5
Sopen03g037080 Solanum pennellii HOM05D005199 ORTHO05D006277 2.1e-70 270.0 294 73.8
Hma1.2p1_0577F.1_g182220 Hydrangea macrophylla HOM05D005199 ORTHO05D006277 3.6e-70 269.2 290 68.6
FAN25G0693 Fragaria x ananassa HOM05D005199 ORTHO05D006277 8.0e-70 268.1 291 67.0
SGA_v2.0_scaffold37G14675 Striga asiatica HOM05D005199 ORTHO05D006277 1.4e-69 267.3 290 70.7
COL.COLO4_37264 Corchorus olitorius HOM05D005199 ORTHO05D006277 4.0e-69 265.8 291 67.7
Cc04_g05820 Coffea canephora HOM05D005199 ORTHO05D006277 8.8e-69 264.6 293 54.9
Migut.I00669 Erythranthe guttata HOM05D005199 ORTHO05D006277 8.8e-69 264.6 292 71.6
Lj1g0022547 Lotus japonicus HOM05D005199 ORTHO05D006277 8.8e-69 264.6 292 66.8
TAR374G0192 Trochodendron aralioides HOM05D005199 ORTHO05D006277 3.4e-68 262.7 290 65.9
vmacro19190 Vaccinium macrocarpon HOM05D005199 ORTHO05D006277 4.4e-68 262.3 293 69.3
Dinv23231 Davidia involucrata HOM05D005199 ORTHO05D006277 5.7e-68 261.9 291 69.8
FAN21G1800 Fragaria x ananassa HOM05D005199 ORTHO05D006277 5.7e-68 261.9 291 62.5
VMungo1309G0841 Vigna mungo HOM05D005199 ORTHO05D006277 5.7e-68 261.9 298 65.1
ECA232G4131 Erigeron canadensis HOM05D005199 ORTHO05D006277 7.5e-68 261.5 299 51.2
TWI14G0958 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 9.1e-66 254.6 294 62.2
SHI14097 Sapria himalayana HOM05D005199 ORTHO05D006277 1.6e-65 253.8 290 50.7
Glyma.06G163600 Glycine max HOM05D005199 ORTHO05D006277 2.0e-65 253.4 296 60.1
Oeu013661.1 Olea europaea HOM05D005199 ORTHO05D006277 7.7e-65 251.5 292 62.0
Actinidia25514 Actinidia chinensis HOM05D005199 ORTHO05D006277 1.3e-64 250.8 293 63.5
FvH4_3g03530 Fragaria vesca HOM05D005199 ORTHO05D006277 2.2e-64 250.0 290 62.1
FAN11G0489 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.2e-64 250.0 290 61.0
FAN11G0779 Fragaria x ananassa HOM05D005199 ORTHO05D006277 6.5e-64 248.4 293 64.8
FvH4_3g04170 Fragaria vesca HOM05D005199 ORTHO05D006277 1.1e-63 247.7 293 64.8
Lalb_Chr07g0183841 Lupinus albus HOM05D005199 ORTHO05D006277 1.5e-63 247.3 302 58.9
Lalb_Chr12g0202561 Lupinus albus HOM05D005199 ORTHO05D006277 1.5e-63 247.3 297 59.9
Gohir.A07G046500 Gossypium hirsutum HOM05D005199 ORTHO05D006277 1.8e-61 240.4 297 58.6
arahy.Tifrunner.gnm1.ann1.4TKD14 Arachis hypogaea HOM05D005199 ORTHO05D006277 6.8e-61 238.4 297 64.0
Duzib084G1266 Durio zibethinus HOM05D005199 ORTHO05D006277 6.8e-61 238.4 293 59.4
Phvul.009G160900 Phaseolus vulgaris HOM05D005199 ORTHO05D006277 1.2e-60 237.7 295 63.7
CDE02G3820 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 4.4e-60 235.7 305 46.6
Cpa.g.sc13.181 Carica papaya HOM05D005199 ORTHO05D006277 7.5e-60 235.0 291 49.8
CDE06G1181 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 9.8e-60 234.6 293 47.4
PGR102G3000 Punica granatum HOM05D005199 ORTHO05D006277 2.0e-57 226.9 284 60.2
arahy.Tifrunner.gnm1.ann1.P6GRAY Arachis hypogaea HOM05D005199 ORTHO05D006277 1.0e-56 224.6 298 57.0
DCAR_025645 Daucus carota HOM05D005199 ORTHO05D006277 3.8e-56 222.6 238 64.3
Gohir.D07G050800 Gossypium hirsutum HOM05D005199 ORTHO05D006277 5.0e-56 222.2 297 57.9
Gorai.001G053900 Gossypium raimondii HOM05D005199 ORTHO05D006277 5.0e-56 222.2 297 62.6
THA.LOC104801769 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 1.5e-55 220.7 302 52.3
MELO3C026157.2 Cucumis melo HOM05D005199 ORTHO05D006277 3.3e-55 219.5 296 59.1
Lsat_1_v5_gn_4_84380 Lactuca sativa HOM05D005199 ORTHO05D006277 3.3e-55 219.5 298 50.0
BcaC01g02441 Brassica carinata HOM05D005199 ORTHO05D006277 5.6e-55 218.8 299 51.8
Eucgr.K02192 Eucalyptus grandis HOM05D005199 ORTHO05D006277 1.6e-54 217.2 259 49.0
Aa31LG11G1640 Aethionema arabicum HOM05D005199 ORTHO05D006277 2.8e-54 216.5 303 54.8
CsaV3_1G000050 Cucumis sativus L. HOM05D005199 ORTHO05D006277 3.6e-54 216.1 296 59.5
Sabra15G0071900 Salix brachista HOM05D005199 ORTHO05D006277 2.3e-53 213.4 290 46.2
Aqoxy5G03105 Aquilegia oxysepala HOM05D005199 ORTHO05D006277 3.0e-53 213.0 306 52.9
C03p65260 Brassica napus HOM05D005199 ORTHO05D006277 3.0e-53 213.0 303 51.2
BolC3t18779H Brassica oleracea HOM05D005199 ORTHO05D006277 3.0e-53 213.0 303 51.2
DCAR_016338 Daucus carota HOM05D005199 ORTHO05D006277 3.0e-53 213.0 309 45.6
Thhalv10005606m.g Eutrema salsugineum HOM05D005199 ORTHO05D006277 4.0e-53 212.6 299 61.2
THA.LOC104818285 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 1.2e-52 211.1 304 56.6
ClCG06G018380 Citrullus lanatus HOM05D005199 ORTHO05D006277 2.0e-52 210.3 249 70.3
A06p28520 Brassica napus HOM05D005199 ORTHO05D006277 3.4e-52 209.5 305 51.5
BraA06t25798Z Brassica rapa HOM05D005199 ORTHO05D006277 3.4e-52 209.5 305 51.5
BcaB07g29818 Brassica carinata HOM05D005199 ORTHO05D006277 1.3e-51 207.6 299 57.9
CARHR275620 Cardamine hirsuta HOM05D005199 ORTHO05D006277 1.3e-51 207.6 299 61.5
PSO478G1920 Papaver somniferum HOM05D005199 ORTHO05D006277 1.3e-51 207.6 237 64.1
Carub.0008s2255 Capsella rubella HOM05D005199 ORTHO05D006277 1.7e-51 207.2 305 58.4
Sp2g25050 Schrenkiella parvula HOM05D005199 ORTHO05D006277 1.7e-51 207.2 303 47.9
BcaB02g09607 Brassica carinata HOM05D005199 ORTHO05D006277 6.4e-51 205.3 301 54.2
A02p41740 Brassica napus HOM05D005199 ORTHO05D006277 1.1e-50 204.5 301 62.5
MBI10_g44970_MAGBIO Magnolia biondii HOM05D005199 ORTHO05D006277 1.1e-50 204.5 242 67.8
C02p61660 Brassica napus HOM05D005199 ORTHO05D006277 1.8e-50 203.8 301 62.8
BcaC03g18101 Brassica carinata HOM05D005199 ORTHO05D006277 2.4e-50 203.4 300 63.0
EL10Ac5g11279 Beta vulgaris HOM05D005199 ORTHO05D006277 7.0e-50 201.8 288 43.8
AL8G38620 Arabidopsis lyrata HOM05D005199 ORTHO05D006277 2.0e-49 200.3 303 61.1
AT5G61850 Arabidopsis thaliana HOM05D005199 ORTHO05D006277 2.0e-49 200.3 303 49.2
BraA02t09114Z Brassica rapa HOM05D005199 ORTHO05D006277 5.9e-49 198.7 305 61.6
Sc22g0003300 Simmondsia chinensis HOM05D005199 ORTHO05D006277 1.0e-48 198.0 349 51.3
arahy.Tifrunner.gnm1.ann1.33WSUR Arachis hypogaea HOM05D005199 ORTHO05D006277 1.3e-48 197.6 289 42.9
BolC2t12224H Brassica oleracea HOM05D005199 ORTHO05D006277 1.3e-48 197.6 304 62.2
arahy.Tifrunner.gnm1.ann1.31D2RV Arachis hypogaea HOM05D005199 ORTHO05D006277 2.3e-48 196.8 289 41.9
Actinidia18295 Actinidia chinensis HOM05D005199 ORTHO05D006277 3.0e-48 196.4 165 64.8
AUR62032216 Chenopodium quinoa HOM05D005199 ORTHO05D006277 5.6e-47 192.2 248 47.6
HPP92_021614 Vanilla planifolia HOM05D005199 ORTHO05D006277 5.6e-47 192.2 312 54.2
unitig_0.g1099 Utricularia gibba HOM05D005199 ORTHO05D006277 7.3e-47 191.8 193 57.5
SEGI_03714 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 1.2e-46 191.0 298 38.3
unitig_61.g26224 Utricularia gibba HOM05D005199 ORTHO05D006277 1.6e-46 190.7 193 68.4
ATR0582G251 Amborella trichopoda HOM05D005199 ORTHO05D006277 2.1e-46 190.3 302 50.0
Sed0007314 Sechium edule HOM05D005199 ORTHO05D006277 6.8e-45 185.3 237 51.5
Ah.02g114560 Amaranthus hybridus HOM05D005199 ORTHO05D006277 1.3e-43 181.0 248 50.0
SGA_v2.0_scaffold168G38552 Striga asiatica HOM05D005199 ORTHO05D006277 7.0e-42 175.3 239 43.5
Mapoly0113s0034 Marchantia polymorpha HOM05D005199 ORTHO05D006277 4.7e-38 162.5 245 40.0
Zm00001eb430240 Zea mays HOM05D005199 ORTHO05D006277 1.5e-36 157.5 241 49.0
Os04g0598300 Oryza sativa ssp. japonica HOM05D005199 ORTHO05D006277 6.4e-35 152.1 242 59.9
Lalb_Chr11g0069141 Lupinus albus HOM05D005199 ORTHO05D006277 4.1e-34 149.4 161 53.4
AUR62044212 Chenopodium quinoa HOM05D005199 ORTHO05D006277 1.6e-33 147.5 204 45.6
AagrBONN_evm.TU.Sc2ySwM_228.2166 Anthoceros agrestis HOM05D005199 ORTHO05D006277 4.6e-33 146.0 265 35.8
Zm00001eb071990 Zea mays HOM05D005199 ORTHO05D006277 3.9e-32 142.9 244 43.4
Pp3c3_11670 Physcomitrium patens HOM05D005199 ORTHO05D006277 5.1e-32 142.5 237 35.9
SEGI_00497 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 5.1e-32 142.5 226 36.7
AUR62043310 Chenopodium quinoa HOM05D005199 ORTHO05D006277 2.5e-31 140.2 124 61.3
Pp3c13_8760 Physcomitrium patens HOM05D005199 ORTHO05D006277 1.5e-28 131.0 216 36.1
CANSAT11G1658 Cannabis sativa HOM05D005199 ORTHO05D006277 1.6e-22 110.9 76 71.1
Migut.D01179 Erythranthe guttata HOM05D005199 ORTHO05D006277 1.8e-21 107.5 55 87.3
FAN25G1078 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.4e-21 107.1 137 74.5
Lalb_Chr11g0069151 Lupinus albus HOM05D005199 ORTHO05D006277 2.4e-21 107.1 62 79.0
SMO347G0146 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 1.3e-16 91.3 83 50.6
CDE05G0289 Ceratophyllum demersum HOM05D000263 ORTHO05D000213 6.9e-13 79.0 39 87.2
CBR_g60061 Chara braunii HOM05D005199 ORTHO05D006277 1.7e-11 74.3 77 45.5


User provided reference genes

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