Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 2.8e-305 1051.2 553 100.0
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 6.8e-304 1046.6 553 99.5
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.1e-293 1012.7 553 96.7
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 2.8e-281 971.5 517 96.3
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.2e-268 929.5 590 86.6
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 6.5e-262 907.1 536 89.2
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 1.7e-225 786.2 559 76.4
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 2.2e-222 775.8 557 72.2
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 3.6e-220 768.5 522 74.7
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 1.5e-202 709.9 520 70.2
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 4.9e-201 704.9 518 70.7
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 8.3e-201 704.1 516 70.7
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 3.9e-198 695.3 523 68.8
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 1.5e-197 693.3 510 71.0
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 2.8e-196 689.1 555 66.8
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 1.1e-195 687.2 514 67.7
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 5.2e-195 684.9 511 68.3
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 6.8e-195 684.5 523 67.9
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 2.6e-194 682.6 529 68.2
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 2.2e-193 679.5 518 67.8
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 1.9e-192 676.4 528 65.3
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 1.9e-192 676.4 526 66.3
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 2.7e-191 672.5 549 65.8
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 2.7e-191 672.5 527 65.5
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 1.0e-190 670.6 540 65.7
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 2.5e-189 666.0 522 66.5
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 3.3e-189 665.6 514 67.5
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 1.2e-188 663.7 525 64.8
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 5.2e-187 658.3 513 67.1
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 1.5e-186 656.8 516 66.3
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 1.3e-185 653.7 519 65.5
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 2.4e-184 649.4 520 64.8
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 3.2e-184 649.0 489 69.9
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 2.1e-183 646.4 522 65.1
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 2.1e-183 646.4 546 64.1
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 3.5e-183 645.6 524 63.7
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 7.8e-183 644.4 600 57.5
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 1.7e-182 643.3 521 64.7
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 5.1e-182 641.7 530 63.8
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 8.6e-182 641.0 521 63.7
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 7.3e-181 637.9 546 62.1
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 7.3e-181 637.9 521 64.1
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 7.3e-181 637.9 524 63.5
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 2.0e-178 629.8 526 62.9
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 5.8e-178 628.2 522 63.4
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.3e-177 627.1 516 64.7
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 2.2e-177 626.3 521 63.5
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 2.9e-177 625.9 557 58.5
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 3.8e-177 625.5 543 62.1
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 6.4e-177 624.8 563 58.8
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 1.4e-176 623.6 535 62.2
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 1.4e-176 623.6 516 64.3
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 1.4e-176 623.6 556 58.5
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 3.2e-176 622.5 552 60.5
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 3.2e-176 622.5 556 59.2
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 5.4e-176 621.7 516 64.3
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 7.1e-176 621.3 558 58.8
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 1.7e-174 616.7 538 61.2
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 5.1e-174 615.1 522 62.5
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 2.8e-172 609.4 599 58.1
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 3.1e-171 605.9 527 60.9
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 1.2e-170 604.0 469 65.0
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 2.2e-169 599.7 514 62.3
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 2.2e-169 599.7 509 60.7
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 2.9e-169 599.4 521 62.0
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 4.9e-169 598.6 563 58.8
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 1.9e-168 596.7 452 66.8
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 6.0e-167 591.7 543 58.7
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 7.3e-165 584.7 565 57.2
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 1.4e-163 580.5 533 59.8
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 3.4e-162 575.9 521 59.1
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 4.9e-161 572.0 314 91.1
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 6.4e-161 571.6 522 58.2
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 8.4e-161 571.2 517 58.8
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 1.9e-160 570.1 523 58.7
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 9.3e-160 567.8 517 58.8
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 2.7e-159 566.2 562 54.8
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 3.5e-159 565.8 523 59.5
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 7.9e-159 564.7 522 58.2
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 1.8e-158 563.5 520 59.0
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 3.9e-158 562.4 531 57.3
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 1.5e-157 560.5 482 61.2
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 2.5e-157 559.7 517 57.6
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 4.3e-157 558.9 541 56.6
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 5.6e-157 558.5 536 56.3
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 5.6e-157 558.5 532 56.4
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 9.6e-157 557.8 519 58.8
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 2.8e-156 556.2 517 57.3
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 6.2e-156 555.1 527 57.5
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 1.7e-153 547.0 521 56.4
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 3.8e-153 545.8 512 56.1
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 6.5e-153 545.0 555 54.4
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 2.5e-152 543.1 514 55.1
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.2e-151 540.8 365 69.6
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 3.5e-151 539.3 488 57.6
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 1.0e-150 537.7 557 52.1
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 1.9e-149 533.5 549 55.6
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 2.8e-148 529.6 525 56.2
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 3.1e-147 526.2 543 53.0
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 4.5e-146 522.3 524 55.7
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 1.0e-145 521.2 558 50.9
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 6.5e-145 518.5 517 54.9
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 4.2e-144 515.8 364 68.4
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 9.3e-144 514.6 530 53.8
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 1.1e-141 507.7 556 51.1
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 1.5e-141 507.3 492 54.9
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 2.4e-139 500.0 516 52.1
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 3.1e-139 499.6 631 47.2
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 4.1e-139 499.2 406 60.6
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 4.6e-135 485.7 299 75.6
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 7.9e-135 485.0 515 50.3
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 5.7e-133 478.8 435 59.5
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 2.8e-132 476.5 521 53.0
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 8.2e-132 474.9 517 48.9
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 1.8e-131 473.8 517 51.3
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 1.2e-127 461.1 485 51.3
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 6.1e-127 458.8 489 53.6
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 7.9e-127 458.4 339 64.0
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 1.0e-126 458.0 524 48.7
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 6.7e-126 455.3 322 68.6
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 5.3e-123 445.7 533 51.2
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 4.0e-118 429.5 469 50.7
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 7.5e-117 425.2 270 71.9
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 1.2e-114 417.9 371 54.4
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 1.1e-112 411.4 382 52.6
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 1.1e-112 411.4 392 52.0
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 2.5e-112 410.2 536 43.7
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 3.2e-112 409.8 384 52.3
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 6.1e-111 405.6 545 41.7
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 8.0e-111 405.2 537 43.4
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 1.0e-110 404.8 537 43.4
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 2.3e-110 403.7 349 55.9
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 1.2e-109 401.4 555 42.3
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 1.5e-109 401.0 555 42.3
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 2.8e-108 396.7 482 46.5
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 2.8e-108 396.7 568 41.4
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 3.7e-108 396.4 279 64.2
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 3.7e-108 396.4 413 52.5
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 1.7e-105 387.5 559 41.9
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 1.7e-105 387.5 559 41.9
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 1.7e-105 387.5 580 39.1
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 1.5e-104 384.4 552 41.1
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 1.5e-104 384.4 552 41.1
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 2.5e-104 383.6 408 50.0
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 1.4e-102 377.9 299 56.9
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 1.4e-99 367.9 452 47.6
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 4.1e-99 366.3 517 41.6
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 1.5e-96 357.8 229 70.7
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 1.0e-89 335.1 460 46.3
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 4.7e-87 326.2 208 71.6
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 8.9e-86 322.0 208 70.7
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 7.0e-83 312.4 305 48.2
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 2.1e-71 274.2 536 38.1
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 4.1e-67 260.0 291 54.3
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 3.1e-62 243.8 323 48.6
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 8.1e-55 219.2 163 64.4
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 1.6e-50 204.9 566 32.0
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 7.4e-48 196.1 240 52.5
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 3.6e-47 193.7 530 31.7
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 1.8e-46 191.4 283 44.5
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 9.3e-43 179.1 260 37.7
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 3.5e-42 177.2 124 68.5
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 6.9e-38 162.9 105 72.4
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 1.2e-37 162.2 137 56.9
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 4.6e-34 150.2 83 83.1
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 2.0e-29 134.8 82 76.8
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 6.1e-26 123.2 67 83.6
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 7.9e-26 122.9 131 46.6
Os08g0511500 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 5.1e-25 120.2 92 58.7
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 2.5e-24 117.9 65 83.1
Os03g0851600 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 6.1e-18 96.7 231 37.2
CDE02G2184 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 2.3e-17 94.7 226 33.2
SEGI_28594 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 2.5e-11 74.7 230 31.7
Ah.11g046900 Amaranthus hybridus HOM05D003971 ORTHO05D004762 2.0e-08 65.1 162 37.0
Os11g0660300 Oryza sativa ssp. japonica HOM05D005151 ORTHO05D006322 9.7e-08 62.8 357 24.9


User provided reference genes

Program Settings