Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g09330 Fragaria vesca HOM05D005570 ORTHO05D007368 2.4e-119 432.2 219 100.0
FAN18G0853 Fragaria x ananassa HOM05D005570 ORTHO05D007368 2.1e-94 349.4 182 100.0
FAN13G2066 Fragaria x ananassa HOM05D005570 ORTHO05D007368 1.0e-93 347.1 182 99.5
FAN04G1041 Fragaria x ananassa HOM05D005570 ORTHO05D007368 9.6e-92 340.5 182 97.3
RcHm_v2.0_Chr7g0188821 Rosa chinensis HOM05D005570 ORTHO05D007368 1.7e-85 319.7 178 92.7
Prupe.5G143000 Prunus persica HOM05D005570 ORTHO05D007368 1.0e-69 267.3 174 79.3
MD06G1132000 Malus domestica HOM05D005570 ORTHO05D007368 1.9e-68 263.1 180 77.2
MD14G1148400 Malus domestica HOM05D005570 ORTHO05D007368 9.6e-68 260.8 177 78.5
CiPaw.01G284700 Carya illinoinensis HOM05D005570 ORTHO05D007368 1.6e-59 233.4 177 71.2
Lj9C217G3 Lonicera japonica HOM05D005570 ORTHO05D007368 8.2e-59 231.1 172 72.1
Hma1.2p1_0599F.1_g187020 Hydrangea macrophylla HOM05D005570 ORTHO05D007368 3.4e-57 225.7 164 73.8
Potri.014G169500 Populus trichocarpa HOM05D005570 ORTHO05D007368 3.4e-57 225.7 171 69.0
Cfa018716 Carpinus fangiana HOM05D005570 ORTHO05D007368 2.2e-56 223.0 171 68.4
PGR044G2338 Punica granatum HOM05D005570 ORTHO05D007368 2.2e-56 223.0 168 69.6
Atru.chr6.3424 Acer truncatum HOM05D005570 ORTHO05D007368 3.8e-56 222.2 179 69.3
CSS0001120 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 3.8e-56 222.2 167 70.1
Sc21g0000460 Simmondsia chinensis HOM05D005570 ORTHO05D007368 6.5e-56 221.5 171 66.7
PGR031G1532 Punica granatum HOM05D005570 ORTHO05D007368 8.5e-56 221.1 167 69.5
Manes.13G060500 Manihot esculenta HOM05D005570 ORTHO05D007368 1.4e-55 220.3 163 72.4
Sabra14G0129400 Salix brachista HOM05D005570 ORTHO05D007368 1.4e-55 220.3 172 67.4
CsaV3_1G000130 Cucumis sativus L. HOM05D005570 ORTHO05D007368 2.5e-55 219.5 170 71.2
Haze_07109 Corylus avellana HOM05D005570 ORTHO05D007368 4.2e-55 218.8 171 67.3
DCAR_008745 Daucus carota HOM05D005570 ORTHO05D007368 4.2e-55 218.8 160 72.5
Eucgr.K01395 Eucalyptus grandis HOM05D005570 ORTHO05D007368 4.2e-55 218.8 161 71.4
Sed0027705 Sechium edule HOM05D005570 ORTHO05D007368 5.5e-55 218.4 159 73.6
TWI18G0239 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 9.3e-55 217.6 166 66.9
Carub.0003s2602 Capsella rubella HOM05D005570 ORTHO05D007368 1.2e-54 217.2 163 68.7
QL10p000758 Quercus lobata HOM05D005570 ORTHO05D007368 1.2e-54 217.2 160 70.6
Ciclev10016955m.g Citrus clementina HOM05D005570 ORTHO05D007368 1.6e-54 216.9 165 69.7
Solyc07g042710.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 4.6e-54 215.3 170 65.9
Sopen07g023810 Solanum pennellii HOM05D005570 ORTHO05D007368 4.6e-54 215.3 170 65.9
CARHR102200 Cardamine hirsuta HOM05D005570 ORTHO05D007368 1.0e-53 214.2 163 68.7
CSS0020937 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 1.3e-53 213.8 167 68.3
ClCG06G018310 Citrullus lanatus HOM05D005570 ORTHO05D007368 1.3e-53 213.8 159 71.1
Peaxi162Scf00612g00133 Petunia axillaris HOM05D005570 ORTHO05D007368 1.3e-53 213.8 159 69.2
Thecc.07G134300 Theobroma cacao HOM05D005570 ORTHO05D007368 1.8e-53 213.4 164 69.5
AUR62019308 Chenopodium quinoa HOM05D005570 ORTHO05D007368 3.0e-53 212.6 160 71.2
Rhsim04G0030600 Rhododendron simsii HOM05D005570 ORTHO05D007368 3.9e-53 212.2 160 71.2
MBI14_g24038_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 5.1e-53 211.8 174 66.7
arahy.Tifrunner.gnm1.ann1.66C0B7 Arachis hypogaea HOM05D005570 ORTHO05D007368 6.7e-53 211.5 174 64.4
arahy.Tifrunner.gnm1.ann1.TWVE3E Arachis hypogaea HOM05D005570 ORTHO05D007368 6.7e-53 211.5 174 64.4
Thhalv10002687m.g Eutrema salsugineum HOM05D005570 ORTHO05D007368 8.7e-53 211.1 163 67.5
Nn4g22113 Nelumbo nucifera HOM05D005570 ORTHO05D007368 8.7e-53 211.1 154 70.8
HanXRQChr03g0075001 Helianthus annuus HOM05D005570 ORTHO05D007368 1.1e-52 210.7 164 66.5
AT2G04340 Arabidopsis thaliana HOM05D005570 ORTHO05D007368 1.5e-52 210.3 163 67.5
Sp3g23170 Schrenkiella parvula HOM05D005570 ORTHO05D007368 1.9e-52 209.9 163 66.9
Aa31LG7G6130 Aethionema arabicum HOM05D005570 ORTHO05D007368 2.5e-52 209.5 172 64.5
Gohir.D01G037900 Gossypium hirsutum HOM05D005570 ORTHO05D007368 2.5e-52 209.5 173 65.3
Gorai.002G046300 Gossypium raimondii HOM05D005570 ORTHO05D007368 2.5e-52 209.5 173 65.3
BcaB06g26780 Brassica carinata HOM05D005570 ORTHO05D007368 5.7e-52 208.4 164 66.5
AUR62000128 Chenopodium quinoa HOM05D005570 ORTHO05D007368 7.4e-52 208.0 164 68.9
Cc02_g29600 Coffea canephora HOM05D005570 ORTHO05D007368 7.4e-52 208.0 154 69.5
Duzib213G1053 Durio zibethinus HOM05D005570 ORTHO05D007368 7.4e-52 208.0 161 68.3
Nitab4.5_0005376g0020 Nicotiana tabacum HOM05D005570 ORTHO05D007368 7.4e-52 208.0 171 63.7
Gohir.A01G047200 Gossypium hirsutum HOM05D005570 ORTHO05D007368 1.3e-51 207.2 170 65.3
Migut.H01280 Erythranthe guttata HOM05D005570 ORTHO05D007368 1.6e-51 206.8 176 62.5
A07p06720 Brassica napus HOM05D005570 ORTHO05D007368 2.2e-51 206.5 163 65.6
BraA07t28466Z Brassica rapa HOM05D005570 ORTHO05D007368 2.2e-51 206.5 163 65.6
COL.COLO4_17467 Corchorus olitorius HOM05D005570 ORTHO05D007368 2.8e-51 206.1 162 66.7
Nitab4.5_0005354g0010 Nicotiana tabacum HOM05D005570 ORTHO05D007368 2.8e-51 206.1 170 63.5
TAR374G1095 Trochodendron aralioides HOM05D005570 ORTHO05D007368 2.8e-51 206.1 172 65.1
Aqoxy2G01347 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 3.7e-51 205.7 165 69.1
Ca_18776_v3 Cicer arietinum L. HOM05D005570 ORTHO05D007368 3.7e-51 205.7 177 62.7
Lsat_1_v5_gn_9_102501 Lactuca sativa HOM05D005570 ORTHO05D007368 3.7e-51 205.7 172 62.2
BcaC06g35864 Brassica carinata HOM05D005570 ORTHO05D007368 4.8e-51 205.3 156 66.7
BolC7t41480H Brassica oleracea HOM05D005570 ORTHO05D007368 4.8e-51 205.3 156 66.7
Actinidia07853 Actinidia chinensis HOM05D005570 ORTHO05D007368 6.3e-51 204.9 167 64.7
Aqoxy7G00316 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 6.3e-51 204.9 172 66.9
C07p10300 Brassica napus HOM05D005570 ORTHO05D007368 6.3e-51 204.9 156 66.7
AL3G42010 Arabidopsis lyrata HOM05D005570 ORTHO05D007368 1.8e-50 203.4 163 65.6
arahy.Tifrunner.gnm1.ann1.18Q938 Arachis hypogaea HOM05D005570 ORTHO05D007368 1.8e-50 203.4 157 66.2
Psat7g132520 Pisum sativum HOM05D005570 ORTHO05D007368 2.4e-50 203.0 172 64.0
Glyma.07G223300 Glycine max HOM05D005570 ORTHO05D007368 3.1e-50 202.6 164 65.2
GSVIVG01018573001 Vitis vinifera HOM05D005570 ORTHO05D007368 5.3e-50 201.8 157 63.7
TPR.G11531 Trifolium pratense HOM05D005570 ORTHO05D007368 2.0e-49 199.9 178 62.9
ECA240G0244 Erigeron canadensis HOM05D005570 ORTHO05D007368 3.4e-49 199.1 144 69.4
MSTRG.12255 Avicennia marina HOM05D005570 ORTHO05D007368 5.9e-49 198.4 163 63.8
unitig_26.g9513 Utricularia gibba HOM05D005570 ORTHO05D007368 5.9e-49 198.4 164 61.0
arahy.Tifrunner.gnm1.ann1.CPK3HX Arachis hypogaea HOM05D005570 ORTHO05D007368 1.3e-48 197.2 149 68.5
PSO357G0372 Papaver somniferum HOM05D005570 ORTHO05D007368 3.8e-48 195.7 158 63.9
Lj1g0005707 Lotus japonicus HOM05D005570 ORTHO05D007368 8.5e-48 194.5 176 59.7
VMungo0251G2804 Vigna mungo HOM05D005570 ORTHO05D007368 1.4e-47 193.7 164 62.2
PSO063G1837 Papaver somniferum HOM05D005570 ORTHO05D007368 5.5e-47 191.8 171 60.2
PSO421G0324 Papaver somniferum HOM05D005570 ORTHO05D007368 9.4e-47 191.0 170 59.4
Medtr4g083580 Medicago truncatula HOM05D005570 ORTHO05D007368 1.2e-46 190.7 171 60.8
MELO3C026167.2 Cucumis melo HOM05D005570 ORTHO05D007368 3.6e-46 189.1 234 50.0
PSO063G6961 Papaver somniferum HOM05D005570 ORTHO05D007368 4.6e-46 188.7 171 59.1
ATR0751G216 Amborella trichopoda HOM05D005570 ORTHO05D007368 7.9e-46 188.0 160 62.5
Cpa.g.sc136.41 Carica papaya HOM05D005570 ORTHO05D007368 1.0e-45 187.6 139 71.2
Phvul.002G100000 Phaseolus vulgaris HOM05D005570 ORTHO05D007368 1.4e-45 187.2 164 59.8
HPP92_013643 Vanilla planifolia HOM05D005570 ORTHO05D007368 3.0e-45 186.0 153 62.7
Lalb_Chr09g0328771 Lupinus albus HOM05D005570 ORTHO05D007368 5.1e-45 185.3 175 57.1
Oeu015172.1 Olea europaea HOM05D005570 ORTHO05D007368 1.1e-44 184.1 144 69.4
EL10Ac4g10242 Beta vulgaris HOM05D005570 ORTHO05D007368 1.5e-44 183.7 203 53.2
Lj8A137G54 Lonicera japonica HOM05D005570 ORTHO05D007368 1.5e-44 183.7 137 71.5
CSS0039609 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 9.7e-44 181.0 167 59.3
TPR.G34081 Trifolium pratense HOM05D005570 ORTHO05D007368 3.7e-43 179.1 144 66.0
CANSAT01G1761 Cannabis sativa HOM05D005570 ORTHO05D007368 8.2e-43 177.9 168 60.7
TWI36G1338 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 3.1e-42 176.0 136 70.6
Ah.12g059860 Amaranthus hybridus HOM05D005570 ORTHO05D007368 2.0e-41 173.3 130 71.5
vmacro09474 Vaccinium macrocarpon HOM05D005570 ORTHO05D007368 1.3e-40 170.6 155 63.9
PSO421G0119 Papaver somniferum HOM05D005570 ORTHO05D007368 2.9e-40 169.5 141 65.2
Zm00001eb101470 Zea mays HOM05D005570 ORTHO05D007368 8.5e-40 167.9 151 57.0
MBI14_g13534_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 1.1e-39 167.5 109 76.1
Os09g0478400 Oryza sativa ssp. japonica HOM05D005570 ORTHO05D007368 3.2e-39 166.0 151 57.6
SGA_v2.0_scaffold317G48443 Striga asiatica HOM05D005570 ORTHO05D007368 3.6e-38 162.5 184 50.5
SGA_v2.0_scaffold96G29016 Striga asiatica HOM05D005570 ORTHO05D007368 3.3e-36 156.0 152 57.9
CDE10G0507 Ceratophyllum demersum HOM05D005570 ORTHO05D007368 1.4e-34 150.6 142 57.0
SEGI_08222 Sequoiadendron giganteum HOM05D005570 ORTHO05D007368 3.5e-33 146.0 132 58.3
Lsat_1_v5_gn_4_24381 Lactuca sativa HOM05D005570 ORTHO05D007368 8.5e-32 141.4 105 68.6
SGA_v2.0_scaffold317G48460 Striga asiatica HOM05D005570 ORTHO05D007368 8.5e-32 141.4 136 59.6
Rhsim04G0030300 Rhododendron simsii HOM05D005570 ORTHO05D007368 1.6e-30 137.1 85 77.6
Hund21535 Selenicereus undatus HOM05D005570 ORTHO05D007368 2.7e-30 136.3 90 72.2
Rhsim04G0030400 Rhododendron simsii HOM05D005570 ORTHO05D007368 2.0e-28 130.2 78 79.5
SGA_v2.0_scaffold28G12060 Striga asiatica HOM05D005570 ORTHO05D007368 3.5e-25 119.4 113 57.5
Mapoly0084s0063 Marchantia polymorpha HOM05D005570 ORTHO05D007368 4.5e-25 119.0 136 46.3
Gohir.D01G037901 Gossypium hirsutum HOM05D005570 ORTHO05D007368 1.3e-24 117.5 74 77.0
Solyc07g045260.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 3.6e-22 109.4 66 77.3
SGA_v2.0_scaffold323G48653 Striga asiatica HOM05D005570 ORTHO05D007368 3.6e-22 109.4 127 50.4
SGA_v2.0_scaffold2G00813 Striga asiatica HOM05D005570 ORTHO05D007368 4.7e-22 109.0 136 51.5
Glyma.20G022600 Glycine max HOM05D005570 ORTHO05D007368 2.3e-21 106.7 115 54.8
Pp3c22_13450 Physcomitrium patens HOM05D005570 ORTHO05D007368 2.3e-21 106.7 146 41.1
Oeu031101.2 Olea europaea HOM05D005570 ORTHO05D007368 3.5e-17 92.8 55 78.2
Potri.001G241100 Populus trichocarpa HOM05D005570 ORTHO05D007368 2.2e-16 90.1 90 55.6
Potri.014G169750 Populus trichocarpa HOM05D005570 ORTHO05D007368 8.5e-16 88.2 54 79.6
Lsat_1_v5_gn_4_72161 Lactuca sativa HOM05D005570 ORTHO05D007368 4.2e-15 85.9 53 79.2
Hund30621 Selenicereus undatus HOM05D005570 ORTHO05D007368 8.0e-14 81.6 75 66.7
Hund30622 Selenicereus undatus HOM05D005570 ORTHO05D007368 8.0e-14 81.6 75 66.7
SGA_v2.0_scaffold317G48459 Striga asiatica HOM05D005570 ORTHO05D007368 3.4e-12 76.3 58 63.8
Potri.001G240904 Populus trichocarpa HOM05D005570 ORTHO05D007368 4.4e-12 75.9 48 79.2
CBR_g57071 Chara braunii HOM05D001740 ORTHO05D001468 7.0e-10 68.6 85 31.8


User provided reference genes

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