Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g08420 Fragaria vesca HOM05D007115 ORTHO05D008923 6.3e-160 567.4 289 100.0
FAN04G1902 Fragaria x ananassa HOM05D007115 ORTHO05D008923 5.0e-157 557.8 289 98.3
FAN18G3505 Fragaria x ananassa HOM05D007115 ORTHO05D008923 6.6e-157 557.4 289 98.6
FAN13G1038 Fragaria x ananassa HOM05D007115 ORTHO05D008923 5.2e-154 547.7 285 97.5
FAN08G1896 Fragaria x ananassa HOM05D007115 ORTHO05D008923 1.6e-126 456.4 237 97.5
RcHm_v2.0_Chr7g0190021 Rosa chinensis HOM05D007115 ORTHO05D008923 1.0e-117 427.2 237 90.7
Prupe.5G150000 Prunus persica HOM05D007115 ORTHO05D008923 3.8e-96 355.5 225 80.9
MD06G1140800 Malus domestica HOM05D007115 ORTHO05D008923 2.7e-94 349.4 228 77.6
Haze_07151 Corylus avellana HOM05D007115 ORTHO05D008923 7.2e-87 324.7 226 73.0
CiPaw.12G043900 Carya illinoinensis HOM05D007115 ORTHO05D008923 2.1e-86 323.2 226 72.1
Cfa018785 Carpinus fangiana HOM05D007115 ORTHO05D008923 4.6e-86 322.0 226 72.6
Atru.chr6.1807 Acer truncatum HOM05D007115 ORTHO05D008923 1.0e-80 304.3 222 68.9
GSVIVG01008566001 Vitis vinifera HOM05D007115 ORTHO05D008923 1.0e-80 304.3 214 70.1
Dinv23157 Davidia involucrata HOM05D007115 ORTHO05D008923 5.0e-80 302.0 213 70.9
Manes.14G050500 Manihot esculenta HOM05D007115 ORTHO05D008923 8.5e-80 301.2 227 67.0
Sabra15G0118300 Salix brachista HOM05D007115 ORTHO05D008923 1.9e-79 300.1 226 66.8
Actinidia25565 Actinidia chinensis HOM05D007115 ORTHO05D008923 7.2e-79 298.1 229 67.7
Potri.015G097700 Populus trichocarpa HOM05D007115 ORTHO05D008923 2.1e-78 296.6 223 66.8
Cpa.g.sc13.101 Carica papaya HOM05D007115 ORTHO05D008923 1.0e-77 294.3 221 67.0
Hma1.2p1_0014F.1_g009320 Hydrangea macrophylla HOM05D007115 ORTHO05D008923 2.0e-76 290.0 227 66.1
Rhsim08G0191000 Rhododendron simsii HOM05D007115 ORTHO05D008923 3.3e-76 289.3 231 64.9
Glyma.06G169300 Glycine max HOM05D007115 ORTHO05D008923 1.3e-75 287.3 222 67.1
QL10p002688 Quercus lobata HOM05D007115 ORTHO05D008923 2.2e-75 286.6 279 57.7
Ca_16052_v3 Cicer arietinum L. HOM05D007115 ORTHO05D008923 4.8e-75 285.4 222 66.7
CANSAT80G2203 Cannabis sativa HOM05D007115 ORTHO05D008923 6.3e-75 285.0 229 65.9
Glyma.04G196500 Glycine max HOM05D007115 ORTHO05D008923 8.2e-75 284.6 222 67.6
Ciclev10032623m.g Citrus clementina HOM05D007115 ORTHO05D008923 4.1e-74 282.3 234 65.0
Duzib205G1497 Durio zibethinus HOM05D007115 ORTHO05D008923 7.0e-74 281.6 224 64.3
Aqoxy5G03328 Aquilegia oxysepala HOM05D007115 ORTHO05D008923 9.1e-74 281.2 244 63.5
ClCG03G003830 Citrullus lanatus HOM05D007115 ORTHO05D008923 1.5e-73 280.4 193 71.0
TWI39G0929 Tripterygium wilfordii HOM05D007115 ORTHO05D008923 1.5e-73 280.4 253 62.5
vmacro19121 Vaccinium macrocarpon HOM05D007115 ORTHO05D008923 4.5e-73 278.9 231 63.6
CSS0028949 Camellia sinensis var. sinensis HOM05D007115 ORTHO05D008923 5.9e-73 278.5 237 64.6
Sc04g0000560 Simmondsia chinensis HOM05D007115 ORTHO05D008923 1.0e-72 277.7 225 63.1
MELO3C002367.2 Cucumis melo HOM05D007115 ORTHO05D008923 1.3e-72 277.3 213 65.3
CSS0028892 Camellia sinensis var. sinensis HOM05D007115 ORTHO05D008923 1.7e-72 276.9 237 64.6
CsaV3_1G009730 Cucumis sativus L. HOM05D007115 ORTHO05D008923 1.7e-72 276.9 213 64.8
Thecc.03G130400 Theobroma cacao HOM05D007115 ORTHO05D008923 2.2e-72 276.6 223 62.8
VMungo1309G2111 Vigna mungo HOM05D007115 ORTHO05D008923 2.2e-72 276.6 222 64.9
Hund02448 Selenicereus undatus HOM05D007115 ORTHO05D008923 3.8e-72 275.8 240 59.2
Lj5A95G76 Lonicera japonica HOM05D007115 ORTHO05D008923 6.5e-72 275.0 199 70.4
Lj1g0010129 Lotus japonicus HOM05D007115 ORTHO05D008923 6.5e-72 275.0 224 65.6
Medtr3g099140 Medicago truncatula HOM05D007115 ORTHO05D008923 1.1e-71 274.2 211 68.2
Lsat_1_v5_gn_1_33120 Lactuca sativa HOM05D007115 ORTHO05D008923 7.2e-71 271.6 239 59.4
Lalb_Chr11g0069511 Lupinus albus HOM05D007115 ORTHO05D008923 2.1e-70 270.0 225 63.1
THA.LOC104811583 Tarenaya hassleriana HOM05D007115 ORTHO05D008923 6.1e-70 268.5 236 59.7
HanXRQChr02g0034681 Helianthus annuus HOM05D007115 ORTHO05D008923 8.0e-70 268.1 214 65.9
Oeu004998.1 Olea europaea HOM05D007115 ORTHO05D008923 1.0e-69 267.7 180 71.1
Phvul.009G165800 Phaseolus vulgaris HOM05D007115 ORTHO05D008923 1.8e-69 266.9 203 67.0
ATR0790G002 Amborella trichopoda HOM05D007115 ORTHO05D008923 3.9e-69 265.8 223 61.0
TPR.G14207 Trifolium pratense HOM05D007115 ORTHO05D008923 5.2e-69 265.4 213 66.2
AL7G28270 Arabidopsis lyrata HOM05D007115 ORTHO05D008923 6.7e-69 265.0 229 61.6
Nitab4.5_0000624g0110 Nicotiana tabacum HOM05D007115 ORTHO05D008923 3.7e-67 259.2 233 57.5
AT4G24930 Arabidopsis thaliana HOM05D007115 ORTHO05D008923 1.1e-66 257.7 226 59.7
Nitab4.5_0001311g0160 Nicotiana tabacum HOM05D007115 ORTHO05D008923 1.4e-66 257.3 186 67.2
PGSC0003DMG400015264 Solanum tuberosum HOM05D007115 ORTHO05D008923 7.0e-66 255.0 221 58.8
Carub.0007s1613 Capsella rubella HOM05D007115 ORTHO05D008923 1.2e-65 254.2 220 60.5
Sopen03g029960 Solanum pennellii HOM05D007115 ORTHO05D008923 1.6e-65 253.8 180 67.8
Solyc03g019660.4 Solanum lycopersicum HOM05D007115 ORTHO05D008923 2.6e-65 253.1 186 66.1
CARHR232330 Cardamine hirsuta HOM05D007115 ORTHO05D008923 4.5e-65 252.3 202 64.9
PGR083G2674 Punica granatum HOM05D007115 ORTHO05D008923 5.9e-65 251.9 169 72.2
CAN.G1611.7 Capsicum annuum HOM05D007115 ORTHO05D008923 1.0e-64 251.1 181 67.4
MSTRG.11273 Avicennia marina HOM05D007115 ORTHO05D008923 1.3e-64 250.8 180 68.3
Eucgr.B00101 Eucalyptus grandis HOM05D007115 ORTHO05D008923 1.3e-64 250.8 191 67.0
Peaxi162Scf00089g00121 Petunia axillaris HOM05D007115 ORTHO05D008923 1.3e-64 250.8 233 57.9
Gohir.D11G039800 Gossypium hirsutum HOM05D007115 ORTHO05D008923 5.0e-64 248.8 211 62.6
AUR62034838 Chenopodium quinoa HOM05D007115 ORTHO05D008923 6.5e-64 248.4 167 69.5
BcaNung06011 Brassica carinata HOM05D007115 ORTHO05D008923 1.9e-63 246.9 227 56.8
Aa31LG7G10860 Aethionema arabicum HOM05D007115 ORTHO05D008923 2.5e-63 246.5 226 58.4
BolC1t01950H Brassica oleracea HOM05D007115 ORTHO05D008923 2.5e-63 246.5 228 57.0
EL10Ac5g11401 Beta vulgaris HOM05D007115 ORTHO05D008923 5.5e-63 245.4 176 66.5
Thhalv10026135m.g Eutrema salsugineum HOM05D007115 ORTHO05D008923 9.4e-63 244.6 186 65.6
Gohir.A11G036350 Gossypium hirsutum HOM05D007115 ORTHO05D008923 9.4e-63 244.6 173 69.9
DCAR_007496 Daucus carota HOM05D007115 ORTHO05D008923 1.6e-62 243.8 206 64.6
ECA247G2755 Erigeron canadensis HOM05D001512 ORTHO05D001574 2.7e-62 243.0 149 74.5
Gorai.007G042800 Gossypium raimondii HOM05D007115 ORTHO05D008923 4.7e-62 242.3 211 60.2
A01p16220 Brassica napus HOM05D007115 ORTHO05D008923 1.8e-61 240.4 230 55.2
BraA01t01558Z Brassica rapa HOM05D007115 ORTHO05D008923 1.8e-61 240.4 230 55.2
CDE02G1164 Ceratophyllum demersum HOM05D007115 ORTHO05D008923 2.3e-61 240.0 226 55.8
Sp7g22910 Schrenkiella parvula HOM05D007115 ORTHO05D008923 6.8e-61 238.4 187 64.7
unitig_8.g3030 Utricularia gibba HOM05D007115 ORTHO05D008923 1.5e-60 237.3 244 52.0
C01p20210 Brassica napus HOM05D007115 ORTHO05D008923 2.8e-59 233.0 232 53.9
PSO017G0512 Papaver somniferum HOM05D007115 ORTHO05D008923 1.4e-58 230.7 176 66.5
Migut.I00540 Erythranthe guttata HOM05D007115 ORTHO05D008923 4.1e-58 229.2 241 55.2
Cc04_g09720 Coffea canephora HOM05D007115 ORTHO05D008923 1.2e-57 227.6 200 60.0
HPP92_023120 Vanilla planifolia HOM05D007115 ORTHO05D008923 7.7e-57 224.9 184 59.8
SalBow5G3672 Salvia bowleyana HOM05D007115 ORTHO05D008923 5.0e-56 222.2 261 49.8
Nn4g22293 Nelumbo nucifera HOM05D007115 ORTHO05D008923 2.1e-54 216.9 134 75.4
TAR622G0416 Trochodendron aralioides HOM05D007115 ORTHO05D008923 3.6e-54 216.1 174 62.6
SGA_v2.0_scaffold258G45802 Striga asiatica HOM05D007115 ORTHO05D008923 1.4e-50 204.1 237 48.9
arahy.Tifrunner.gnm1.ann1.YTW6SU Arachis hypogaea HOM05D007115 ORTHO05D008923 1.0e-45 188.0 204 55.9
Zm00001eb334110 Zea mays HOM05D007115 ORTHO05D008923 2.7e-41 173.3 148 57.4
Os01g0102300 Oryza sativa ssp. japonica HOM05D007115 ORTHO05D008923 5.6e-39 165.6 175 50.3
Psat5g051920 Pisum sativum HOM05D007115 ORTHO05D008923 4.7e-38 162.5 152 61.2
COL.COLO4_28141 Corchorus olitorius HOM05D007115 ORTHO05D008923 2.0e-36 157.1 96 76.0
AUR62029602 Chenopodium quinoa HOM05D007115 ORTHO05D008923 2.2e-35 153.7 95 70.5
Pp3c6_23090 Physcomitrium patens HOM05D007115 ORTHO05D008923 4.9e-35 152.5 197 44.2
arahy.Tifrunner.gnm1.ann1.BUY811 Arachis hypogaea HOM05D007115 ORTHO05D008923 5.4e-34 149.1 134 64.9
SMO356G0600 Selaginella moellendorffii HOM05D007115 ORTHO05D008923 6.0e-33 145.6 155 49.0
MBI11_g41395_MAGBIO Magnolia biondii HOM05D007115 ORTHO05D008923 1.3e-32 144.4 131 57.3
Sed0002696 Sechium edule HOM05D007115 ORTHO05D008923 1.2e-30 137.9 120 60.8
SEGI_00544 Sequoiadendron giganteum HOM05D007115 ORTHO05D008923 6.6e-24 115.5 112 53.6
Actinidia18342 Actinidia chinensis HOM05D007115 ORTHO05D008923 2.8e-22 110.2 64 73.4
ATR0405G001 Amborella trichopoda HOM05D007115 ORTHO05D008923 3.1e-21 106.7 62 79.0
FAN18G1815 Fragaria x ananassa HOM05D007115 ORTHO05D008923 1.1e-18 98.2 61 82.0
Ah.02g114850 Amaranthus hybridus HOM05D007115 ORTHO05D008923 1.9e-18 97.4 131 45.8
FAN13G2062 Fragaria x ananassa HOM05D007115 ORTHO05D008923 1.2e-17 94.7 63 81.0
AL6G46780 Arabidopsis lyrata HOM05D007115 ORTHO05D008923 1.6e-14 84.3 95 51.6
Actinidia18341 Actinidia chinensis HOM05D000804 ORTHO05D000989 8.1e-14 82.0 100 52.0
Sabra12G0072200 Salix brachista HOM05D007115 ORTHO05D008923 4.9e-11 72.8 61 60.7
FAN04G0070 Fragaria x ananassa HOM05D007115 ORTHO05D008923 4.2e-10 69.7 47 76.6
MCO03G440 Micromonas commoda HOM05D007115 ORTHO05D008923 2.7e-09 67.0 160 29.4


User provided reference genes

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